BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035190
(70 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225470287|ref|XP_002266482.1| PREDICTED: general transcription factor IIH subunit 5 [Vitis
vinifera]
gi|297742669|emb|CBI34818.3| unnamed protein product [Vitis vinifera]
Length = 70
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/70 (90%), Positives = 68/70 (97%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNA KGLFISCDIPMAQFIINMNASMP SQKFIIH+LDSTHLFVQP++AEMIRSAI+EF
Sbjct: 1 MVNATKGLFISCDIPMAQFIINMNASMPASQKFIIHVLDSTHLFVQPHVAEMIRSAISEF 60
Query: 61 RDQNSYEKPA 70
R+QNSYEKPA
Sbjct: 61 REQNSYEKPA 70
>gi|357130141|ref|XP_003566711.1| PREDICTED: xylem cysteine proteinase 1-like [Brachypodium
distachyon]
Length = 457
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/69 (81%), Positives = 65/69 (94%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKGLFISCD+PMAQFI+N+NASMP S+KFI+H+LD TH+FVQP++ EMIRS IAEF
Sbjct: 1 MVNAIKGLFISCDVPMAQFIVNLNASMPASEKFIVHMLDPTHMFVQPHVGEMIRSKIAEF 60
Query: 61 RDQNSYEKP 69
RDQNSYEKP
Sbjct: 61 RDQNSYEKP 69
>gi|115472939|ref|NP_001060068.1| Os07g0573600 [Oryza sativa Japonica Group]
gi|34393555|dbj|BAC83153.1| unknown protein [Oryza sativa Japonica Group]
gi|113611604|dbj|BAF21982.1| Os07g0573600 [Oryza sativa Japonica Group]
gi|215707252|dbj|BAG93712.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218199880|gb|EEC82307.1| hypothetical protein OsI_26568 [Oryza sativa Indica Group]
gi|222637319|gb|EEE67451.1| hypothetical protein OsJ_24828 [Oryza sativa Japonica Group]
Length = 131
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 65/70 (92%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKGLFISCD+PMAQFI+N+NASMP S KFI+H+LD TH+FVQP++AEMIRS I+EF
Sbjct: 62 MVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRSKISEF 121
Query: 61 RDQNSYEKPA 70
RDQNSYEKP
Sbjct: 122 RDQNSYEKPT 131
>gi|224125074|ref|XP_002329886.1| predicted protein [Populus trichocarpa]
gi|222871123|gb|EEF08254.1| predicted protein [Populus trichocarpa]
Length = 70
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/70 (81%), Positives = 68/70 (97%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNA KGLFISCDIPMAQFIIN+NAS+P SQKFIIHILDSTH+FVQP++++MIRSAI++F
Sbjct: 1 MVNATKGLFISCDIPMAQFIINLNASLPASQKFIIHILDSTHMFVQPHVSDMIRSAISDF 60
Query: 61 RDQNSYEKPA 70
R+QNSYEKP+
Sbjct: 61 REQNSYEKPS 70
>gi|297844104|ref|XP_002889933.1| hypothetical protein ARALYDRAFT_471390 [Arabidopsis lyrata subsp.
lyrata]
gi|297335775|gb|EFH66192.1| hypothetical protein ARALYDRAFT_471390 [Arabidopsis lyrata subsp.
lyrata]
Length = 71
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/70 (81%), Positives = 65/70 (92%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKG+FISCDIPM QFI+NMN SMP SQKFIIH+LDSTHLFVQP++ +MIRSAI++F
Sbjct: 1 MVNAIKGVFISCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60
Query: 61 RDQNSYEKPA 70
RDQNSYEKP
Sbjct: 61 RDQNSYEKPT 70
>gi|8778626|gb|AAF79634.1|AC025416_8 F5O11.12 [Arabidopsis thaliana]
Length = 113
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 65/70 (92%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKG+F+SCDIPM QFI+NMN SMP SQKFIIH+LDSTHLFVQP++ +MIRSAI++F
Sbjct: 43 MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 102
Query: 61 RDQNSYEKPA 70
RDQNSYEKP
Sbjct: 103 RDQNSYEKPT 112
>gi|15221323|ref|NP_172702.1| basal transcription factor complex TTD-A subunit [Arabidopsis
thaliana]
gi|38566546|gb|AAR24163.1| At1g12400 [Arabidopsis thaliana]
gi|40823747|gb|AAR92302.1| At1g12400 [Arabidopsis thaliana]
gi|332190754|gb|AEE28875.1| basal transcription factor complex TTD-A subunit [Arabidopsis
thaliana]
Length = 71
Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 65/70 (92%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKG+F+SCDIPM QFI+NMN SMP SQKFIIH+LDSTHLFVQP++ +MIRSAI++F
Sbjct: 1 MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60
Query: 61 RDQNSYEKPA 70
RDQNSYEKP
Sbjct: 61 RDQNSYEKPT 70
>gi|326515518|dbj|BAK07005.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 71
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 63/70 (90%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKGLFISCDIPMAQFI+NMNASMP S KFI+HILD TH+F+QPNM + I+S +AEF
Sbjct: 2 MVNAIKGLFISCDIPMAQFIVNMNASMPASDKFIVHILDPTHMFIQPNMGDYIKSKMAEF 61
Query: 61 RDQNSYEKPA 70
RDQNSYEKP
Sbjct: 62 RDQNSYEKPT 71
>gi|242090297|ref|XP_002440981.1| hypothetical protein SORBIDRAFT_09g018330 [Sorghum bicolor]
gi|241946266|gb|EES19411.1| hypothetical protein SORBIDRAFT_09g018330 [Sorghum bicolor]
Length = 70
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 65/69 (94%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKGLFISCD+PMAQFI+N+NASMP S++FI+H+LD TH+FVQP++AEMIRS IAEF
Sbjct: 1 MVNAIKGLFISCDVPMAQFIVNLNASMPASERFIVHMLDPTHMFVQPHVAEMIRSKIAEF 60
Query: 61 RDQNSYEKP 69
DQNSYEKP
Sbjct: 61 WDQNSYEKP 69
>gi|218196244|gb|EEC78671.1| hypothetical protein OsI_18797 [Oryza sativa Indica Group]
gi|222630525|gb|EEE62657.1| hypothetical protein OsJ_17460 [Oryza sativa Japonica Group]
Length = 81
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 64/70 (91%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKGLFISCD+PMAQFI+N+NASMP S KFI+H+LD TH+FVQP++AEMIR I+EF
Sbjct: 12 MVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRGKISEF 71
Query: 61 RDQNSYEKPA 70
RDQNSYEKP
Sbjct: 72 RDQNSYEKPT 81
>gi|413942352|gb|AFW75001.1| REX1 DNA Repair family protein [Zea mays]
Length = 154
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 64/69 (92%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKGLFISCD+PMAQFI+N+NASMP S++FI+H+LD T++FVQP++A MIRS I EF
Sbjct: 85 MVNAIKGLFISCDVPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEF 144
Query: 61 RDQNSYEKP 69
RDQNSYEKP
Sbjct: 145 RDQNSYEKP 153
>gi|413942350|gb|AFW74999.1| REX1 DNA Repair family protein, partial [Zea mays]
Length = 132
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 64/69 (92%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKGLFISCD+PMAQFI+N+NASMP S++FI+H+LD T++FVQP++A MIRS I EF
Sbjct: 63 MVNAIKGLFISCDVPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEF 122
Query: 61 RDQNSYEKP 69
RDQNSYEKP
Sbjct: 123 RDQNSYEKP 131
>gi|224105117|ref|XP_002313692.1| predicted protein [Populus trichocarpa]
gi|222850100|gb|EEE87647.1| predicted protein [Populus trichocarpa]
Length = 70
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 64/69 (92%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNA KGLFISCDIPM QFIIN+NAS+P QKF+IHILDS+H+FVQP+++EMIRSA A+F
Sbjct: 1 MVNATKGLFISCDIPMVQFIINLNASLPALQKFVIHILDSSHMFVQPHVSEMIRSATADF 60
Query: 61 RDQNSYEKP 69
R+QNSYEKP
Sbjct: 61 REQNSYEKP 69
>gi|242086587|ref|XP_002439126.1| hypothetical protein SORBIDRAFT_09g000940 [Sorghum bicolor]
gi|241944411|gb|EES17556.1| hypothetical protein SORBIDRAFT_09g000940 [Sorghum bicolor]
Length = 70
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 64/69 (92%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKGLFISCDIPMAQFI+N+NASMP S++FI+H+LD T++FVQP++A MIRS I EF
Sbjct: 1 MVNAIKGLFISCDIPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEF 60
Query: 61 RDQNSYEKP 69
RDQNSYEKP
Sbjct: 61 RDQNSYEKP 69
>gi|226503747|ref|NP_001148022.1| REX1 DNA Repair family protein [Zea mays]
gi|195615234|gb|ACG29447.1| REX1 DNA Repair family protein [Zea mays]
gi|195628074|gb|ACG35867.1| REX1 DNA Repair family protein [Zea mays]
gi|195639980|gb|ACG39458.1| REX1 DNA Repair family protein [Zea mays]
gi|413942353|gb|AFW75002.1| REX1 DNA Repair family protein [Zea mays]
Length = 70
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 64/69 (92%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKGLFISCD+PMAQFI+N+NASMP S++FI+H+LD T++FVQP++A MIRS I EF
Sbjct: 1 MVNAIKGLFISCDVPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEF 60
Query: 61 RDQNSYEKP 69
RDQNSYEKP
Sbjct: 61 RDQNSYEKP 69
>gi|449460439|ref|XP_004147953.1| PREDICTED: general transcription factor IIH subunit 5-like
[Cucumis sativus]
gi|449494289|ref|XP_004159503.1| PREDICTED: general transcription factor IIH subunit 5-like
[Cucumis sativus]
Length = 70
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 65/70 (92%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKG+FISCDIPMAQFIIN NAS+P S +FIIHILD+TH+FVQP++A+MIR+AI+EF
Sbjct: 1 MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
Query: 61 RDQNSYEKPA 70
R+Q SYEKP
Sbjct: 61 REQISYEKPT 70
>gi|357488601|ref|XP_003614588.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355515923|gb|AES97546.1| General transcription factor IIH subunit [Medicago truncatula]
gi|388522225|gb|AFK49174.1| unknown [Medicago truncatula]
Length = 70
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 63/70 (90%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNA KG+FISCDIPMAQ+I+NMNAS+P S KFIIHILDSTH+FVQP++ +MIRS IA+F
Sbjct: 1 MVNATKGVFISCDIPMAQYIVNMNASLPASDKFIIHILDSTHMFVQPHVEQMIRSQIAKF 60
Query: 61 RDQNSYEKPA 70
R+ N+Y KP+
Sbjct: 61 REDNTYVKPS 70
>gi|356527853|ref|XP_003532521.1| PREDICTED: uncharacterized protein LOC100785713 [Glycine max]
Length = 157
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 62/69 (89%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNA KG+FISCDIPMAQ+IINMNAS+P S KFIIHILD+TH+FVQP++ +MIRS IA+F
Sbjct: 88 MVNATKGVFISCDIPMAQYIINMNASLPASDKFIIHILDNTHMFVQPHVEQMIRSRIAKF 147
Query: 61 RDQNSYEKP 69
R+ N+Y KP
Sbjct: 148 REDNTYVKP 156
>gi|357488599|ref|XP_003614587.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355515922|gb|AES97545.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 133
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 58/66 (87%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNA KG+FISCDIPMAQFII MNAS P S KFIIHILDSTH+FVQP++ +MIRS IA+F
Sbjct: 1 MVNATKGVFISCDIPMAQFIIKMNASFPTSDKFIIHILDSTHMFVQPHVEQMIRSQIAKF 60
Query: 61 RDQNSY 66
R+ N+Y
Sbjct: 61 REDNTY 66
>gi|168009904|ref|XP_001757645.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168009908|ref|XP_001757647.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691339|gb|EDQ77702.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691341|gb|EDQ77704.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 73
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 60/69 (86%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNAIKG+ ++CDIPMAQ +I++N SMP + KFI+++LD TH++VQP++ +M++S + EF
Sbjct: 1 MVNAIKGILVTCDIPMAQLLISINDSMPNAHKFIVYMLDDTHIYVQPDVGKMLQSKLQEF 60
Query: 61 RDQNSYEKP 69
RDQN+YEKP
Sbjct: 61 RDQNTYEKP 69
>gi|297604025|ref|NP_001054876.2| Os05g0198700 [Oryza sativa Japonica Group]
gi|255676118|dbj|BAF16790.2| Os05g0198700 [Oryza sativa Japonica Group]
Length = 121
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 51/54 (94%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIR 54
MVNAIKGLFISCD+PMAQFI+N+NASMP S KFI+H+LD TH+FVQP++AEMIR
Sbjct: 57 MVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIR 110
>gi|414869007|tpg|DAA47564.1| TPA: hypothetical protein ZEAMMB73_205586 [Zea mays]
Length = 87
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 56/70 (80%), Gaps = 7/70 (10%)
Query: 1 MVNAIKGL-FISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAE 59
MVN IKGL FISCD+PMAQ I+N+NASMP S+KFI+H+L V P +AEMIRS I+E
Sbjct: 23 MVNVIKGLLFISCDVPMAQLIVNLNASMPPSEKFIVHML------VHPRVAEMIRSKISE 76
Query: 60 FRDQNSYEKP 69
FRDQN YEKP
Sbjct: 77 FRDQNIYEKP 86
>gi|413942351|gb|AFW75000.1| hypothetical protein ZEAMMB73_769025 [Zea mays]
Length = 142
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 52/57 (91%)
Query: 13 DIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSYEKP 69
D+PMAQFI+N+NASMP S++FI+H+LD T++FVQP++A MIRS I EFRDQNSYEKP
Sbjct: 85 DVPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEFRDQNSYEKP 141
>gi|297840239|ref|XP_002888001.1| hypothetical protein ARALYDRAFT_315116 [Arabidopsis lyrata subsp.
lyrata]
gi|297333842|gb|EFH64260.1| hypothetical protein ARALYDRAFT_315116 [Arabidopsis lyrata subsp.
lyrata]
Length = 72
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 57/70 (81%), Gaps = 2/70 (2%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHI--LDSTHLFVQPNMAEMIRSAIA 58
MVN+IKG+FISCD+PMAQFI ++N S+P SQKFII + LD+T +FV+P+ EMIRSA
Sbjct: 1 MVNSIKGVFISCDVPMAQFIAHLNNSLPASQKFIIRVLKLDTTCIFVKPHAEEMIRSAFI 60
Query: 59 EFRDQNSYEK 68
FRDQNSY K
Sbjct: 61 NFRDQNSYAK 70
>gi|186492598|ref|NP_001117537.1| Nucleotide excision repair, TFIIH, subunit TTDA [Arabidopsis
thaliana]
gi|332195897|gb|AEE34018.1| Nucleotide excision repair, TFIIH, subunit TTDA [Arabidopsis
thaliana]
Length = 72
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 57/70 (81%), Gaps = 2/70 (2%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHI--LDSTHLFVQPNMAEMIRSAIA 58
MVN+IKG+FISCD+PMAQFI ++N S+P SQKFII + LD+T +FV+P EMIR A+
Sbjct: 1 MVNSIKGVFISCDVPMAQFIAHLNNSLPASQKFIIQVLKLDTTSMFVKPYAEEMIRDAVI 60
Query: 59 EFRDQNSYEK 68
+FRD+NSY K
Sbjct: 61 KFRDENSYAK 70
>gi|195639910|gb|ACG39423.1| hypothetical protein [Zea mays]
Length = 55
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 49/54 (90%)
Query: 16 MAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSYEKP 69
MAQFI+N+NASMP S++FI+H+LD T++FVQP++A MIRS I EFRDQNSYEKP
Sbjct: 1 MAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEFRDQNSYEKP 54
>gi|115461665|ref|NP_001054432.1| Os05g0108500 [Oryza sativa Japonica Group]
gi|52353571|gb|AAU44137.1| unknown protein [Oryza sativa Japonica Group]
gi|113577983|dbj|BAF16346.1| Os05g0108500 [Oryza sativa Japonica Group]
Length = 65
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
Query: 12 CDIP-MAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSYEKPA 70
C P M Q+ + NASMP S KFI+H+LD TH+FVQP++A+MIRS I+EFRDQNSYEKP+
Sbjct: 6 CSSPVMCQWHSSSNASMPASDKFILHMLDPTHMFVQPHVADMIRSKISEFRDQNSYEKPS 65
>gi|242086589|ref|XP_002439127.1| hypothetical protein SORBIDRAFT_09g000950 [Sorghum bicolor]
gi|241944412|gb|EES17557.1| hypothetical protein SORBIDRAFT_09g000950 [Sorghum bicolor]
Length = 86
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M NAI+G+FISCD PMA+F+ +N SMP+S++FI++ LD TH++V P A MIR I EF
Sbjct: 1 MANAIRGVFISCDAPMAEFVAMLNESMPESERFILYRLDDTHMYVLPQAAAMIRREITEF 60
Query: 61 RDQN 64
+N
Sbjct: 61 SKRN 64
>gi|384251483|gb|EIE24961.1| hypothetical protein COCSUDRAFT_83653 [Coccomyxa subellipsoidea
C-169]
Length = 71
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 45/65 (69%)
Query: 5 IKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQN 64
++G+ + CD+P +FI+++N S P +++F+I LD T LFVQP + E + + EF ++N
Sbjct: 1 MRGVLLQCDVPTKEFILSLNDSKPTNERFVILDLDDTRLFVQPTVVEWLEKRLKEFNEEN 60
Query: 65 SYEKP 69
+Y+ P
Sbjct: 61 TYQPP 65
>gi|337743333|gb|AEI73163.1| GTF2H5 [Kryptolebias marmoratus]
Length = 71
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN KG+ + CD M QF+++++ +M +KFII LD THLF+ + + ++ + E
Sbjct: 1 MVNVHKGVLVECDPAMKQFLLHLDETMALGKKFIIKDLDDTHLFILAEVVQTLQDRVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|291221281|ref|XP_002730649.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 71
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 44/66 (66%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN ++G+ + CD M QF+++++ S +KFII LD THLF+ ++ ++++ I E
Sbjct: 1 MVNVMRGVLVECDPVMKQFLLHLDESNVLGKKFIIQELDETHLFISADIVDILQDKIDEL 60
Query: 61 RDQNSY 66
DQN+Y
Sbjct: 61 MDQNAY 66
>gi|387019069|gb|AFJ51652.1| General transcription factor IIH subunit 5 [Crotalus adamanteus]
Length = 71
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ S +KFII LD TH+FV M ++ + E
Sbjct: 1 MVNVLKGILIECDPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAEMVNFLQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|149430633|ref|XP_001515546.1| PREDICTED: general transcription factor IIH subunit 5-like
[Ornithorhynchus anatinus]
Length = 71
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ S +KFII LD TH+FV + +++ + E
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDLDDTHVFVLAELVNLLQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|327262010|ref|XP_003215819.1| PREDICTED: general transcription factor IIH subunit 5-like
[Anolis carolinensis]
Length = 71
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ S +KFII LD TH+FV M ++ + E
Sbjct: 1 MVNVLKGILIECDPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAEMINCLQEKVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|255073357|ref|XP_002500353.1| predicted protein [Micromonas sp. RCC299]
gi|226515616|gb|ACO61611.1| predicted protein [Micromonas sp. RCC299]
Length = 75
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV+A+ G I DIP +I+++N +P +++F+I LD THL VQP+ E +++ + +
Sbjct: 1 MVSAVHGSLIETDIPCKVYILHINEQLPPAERFVIQDLDETHLLVQPHRLEYVKAEVKAW 60
Query: 61 RDQNSYEKPA 70
+ +N + P
Sbjct: 61 QQKNQFTPPT 70
>gi|410916639|ref|XP_003971794.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
gi|410932672|ref|XP_003979717.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
Length = 71
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN KG+ I CD M +F+++++ +M +KFI+ LD THLF+ + + ++ + E
Sbjct: 1 MVNVHKGVLIECDPAMKEFLLHLDETMALGKKFILKDLDETHLFILAEVVQTLQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|221116934|ref|XP_002160659.1| PREDICTED: general transcription factor IIH subunit 5-like [Hydra
magnipapillata]
Length = 72
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD + QF+++M+ QKF+I LDSTHLFV N+ + + S + E
Sbjct: 1 MVNVLKGVLVECDPTVKQFLLHMDEKGVLGQKFVIEDLDSTHLFVAANIIKTLESKLWEL 60
Query: 61 RDQNSY 66
D+ S+
Sbjct: 61 MDKLSF 66
>gi|148238110|ref|NP_001091004.1| general transcription factor IIH subunit 5 [Gallus gallus]
gi|326915773|ref|XP_003204187.1| PREDICTED: general transcription factor IIH subunit 5-like
[Meleagris gallopavo]
gi|67462032|sp|Q5ZKH0.1|TF2H5_CHICK RecName: Full=General transcription factor IIH subunit 5;
AltName: Full=General transcription factor IIH
polypeptide 5; AltName: Full=TFB5 ortholog; AltName:
Full=TFIIH basal transcription factor complex TTD-A
subunit
gi|53130888|emb|CAG31773.1| hypothetical protein RCJMB04_10n20 [Gallus gallus]
gi|449277879|gb|EMC85901.1| General transcription factor IIH subunit 5 [Columba livia]
Length = 71
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ S +KFII LD TH+FV + ++ + E
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAELVNFLQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|308818193|ref|NP_001184220.1| general transcription factor IIH subunit 5 [Taeniopygia guttata]
gi|350537077|ref|NP_001232744.1| general transcription factor IIH subunit 5 [Taeniopygia guttata]
gi|197128631|gb|ACH45129.1| putative general transcription factor IIH polypeptide 5 variant 2
[Taeniopygia guttata]
gi|197128632|gb|ACH45130.1| putative general transcription factor IIH polypeptide 5 variant 2
[Taeniopygia guttata]
gi|197128633|gb|ACH45131.1| putative general transcription factor IIH polypeptide 5 variant 2
[Taeniopygia guttata]
gi|197128634|gb|ACH45132.1| putative general transcription factor IIH polypeptide 5 variant 2
[Taeniopygia guttata]
Length = 71
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF++ ++ S +KFII LD TH+FV + ++ + E
Sbjct: 1 MVNVLKGVLVECDPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAELVNFLQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|47224616|emb|CAG03600.1| unnamed protein product [Tetraodon nigroviridis]
Length = 71
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN KG+ + CD M +F+++++ +M +KFI+ LD THLF+ + + ++ + E
Sbjct: 1 MVNVHKGVLVECDPAMKEFLLHLDETMALGKKFILKDLDDTHLFILAEVVQTLQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|341926186|ref|NP_001127834.2| general transcription factor IIH subunit 5 [Danio rerio]
gi|341926189|ref|NP_001230077.1| general transcription factor IIH subunit 5 [Danio rerio]
gi|225716198|gb|ACO13945.1| General transcription factor IIH subunit 5 [Esox lucius]
Length = 71
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF++ ++ + +KFII LD TH+F+ + ++++ + E
Sbjct: 1 MVNVLKGVLVECDPAMKQFLLYLDETSALGKKFIIQDLDDTHVFILAEVVQILQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|410930277|ref|XP_003978525.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
Length = 71
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN KG+ + CD M +F+++++ +M +KFI+ LD THLF+ + + ++ + E
Sbjct: 1 MVNVHKGVLLGCDPAMKEFLLHLDETMALGRKFILKDLDETHLFILAEVVQTLQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|410899154|ref|XP_003963062.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
gi|410931373|ref|XP_003979070.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
Length = 71
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN KG+ + CD M +F+++++ +M +KFI+ LD THLF+ + + ++ + E
Sbjct: 1 MVNVHKGVLLECDPAMKEFLLHLDETMALGRKFILKDLDETHLFILAEVVQTLQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|319401861|ref|NP_001188094.1| general transcription factor IIh subunit 5 [Ictalurus punctatus]
gi|308322071|gb|ADO28173.1| general transcription factor IIh subunit 5 [Ictalurus furcatus]
gi|308324549|gb|ADO29409.1| general transcription factor IIh subunit 5 [Ictalurus punctatus]
Length = 71
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF++ ++ + +KFII LD TH+F+ + +++ + E
Sbjct: 1 MVNVLKGVLVECDPAMKQFLLYLDETSALGKKFIIQDLDDTHVFILAEVVHILQEKVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|126310721|ref|XP_001371196.1| PREDICTED: general transcription factor IIH subunit 5-like
[Monodelphis domestica]
Length = 71
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ S +KFII +D TH+FV + ++ + E
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVLAELVNFLQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|213510766|ref|NP_001134770.1| General transcription factor IIH subunit 5 [Salmo salar]
gi|238231695|ref|NP_001154033.1| TFIIH basal transcription factor complex TTD-A subunit
[Oncorhynchus mykiss]
gi|209732492|gb|ACI67115.1| General transcription factor IIH subunit 5 [Salmo salar]
gi|209733974|gb|ACI67856.1| General transcription factor IIH subunit 5 [Salmo salar]
gi|209735844|gb|ACI68791.1| General transcription factor IIH subunit 5 [Salmo salar]
gi|225703508|gb|ACO07600.1| TFIIH basal transcription factor complex TTD-A subunit
[Oncorhynchus mykiss]
gi|303666550|gb|ADM16233.1| General transcription factor IIH subunit 5 [Salmo salar]
Length = 71
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF++ ++ + +KFII LD TH+F+ + +++ + E
Sbjct: 1 MVNVLKGVLVECDPAMKQFLLYLDETSALGKKFIIQDLDDTHVFILAEVVHILQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|62859795|ref|NP_001017298.1| general transcription factor IIH, polypeptide 5 [Xenopus
(Silurana) tropicalis]
Length = 71
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF++ ++ + +KFII LD TH+F+ + +++ + E
Sbjct: 1 MVNVLKGVLVECDPAMKQFLLYLDETNALGKKFIIQDLDDTHVFILAEVVAILQEKVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|348524935|ref|XP_003449978.1| PREDICTED: general transcription factor IIH subunit 5-like
[Oreochromis niloticus]
Length = 71
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN KG+ + CD M QF++ ++ +M +KFI+ LD TH+F+ + + ++ + E
Sbjct: 1 MVNVHKGVLVECDPAMKQFLLYLDETMALGKKFILKDLDDTHVFILAEVVQTLQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|395839130|ref|XP_003792454.1| PREDICTED: general transcription factor IIH subunit 5 [Otolemur
garnettii]
Length = 71
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ S +KFII +D TH+FV + +++ + E
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVVAELVNVLQERVGEL 60
Query: 61 RDQNSY 66
DQN++
Sbjct: 61 MDQNAF 66
>gi|417395385|gb|JAA44754.1| Putative proteinral transcription factor iih subunit 5 [Desmodus
rotundus]
Length = 71
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ S +KFII +D TH+FV + +++ + E
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVTVLQERVGEL 60
Query: 61 RDQNSY 66
DQN++
Sbjct: 61 MDQNAF 66
>gi|348565392|ref|XP_003468487.1| PREDICTED: general transcription factor IIH subunit 5-like [Cavia
porcellus]
Length = 71
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ S +KFII +D TH+FV + +++ + E
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHIFVIAELVNVLQERVGEL 60
Query: 61 RDQNSY 66
DQN++
Sbjct: 61 MDQNAF 66
>gi|46359855|ref|NP_997001.1| general transcription factor IIH subunit 5 [Homo sapiens]
gi|94966867|ref|NP_001035627.1| general transcription factor IIH subunit 5 [Bos taurus]
gi|186910271|ref|NP_001119560.1| general transcription factor IIH subunit 5 [Rattus norvegicus]
gi|300192979|ref|NP_001177898.1| general transcription factor IIH subunit 5 [Macaca mulatta]
gi|73946181|ref|XP_855012.1| PREDICTED: general transcription factor IIH subunit 5 [Canis
lupus familiaris]
gi|114609951|ref|XP_001145020.1| PREDICTED: general transcription factor IIH subunit 5 isoform 3
[Pan troglodytes]
gi|296199527|ref|XP_002747193.1| PREDICTED: general transcription factor IIH subunit 5 [Callithrix
jacchus]
gi|297679502|ref|XP_002817565.1| PREDICTED: general transcription factor IIH subunit 5 isoform 2
[Pongo abelii]
gi|301758625|ref|XP_002915161.1| PREDICTED: general transcription factor IIH subunit 5-like
[Ailuropoda melanoleuca]
gi|332245292|ref|XP_003271794.1| PREDICTED: general transcription factor IIH subunit 5 [Nomascus
leucogenys]
gi|350578009|ref|XP_003480269.1| PREDICTED: general transcription factor IIH subunit 5-like
isoform 1 [Sus scrofa]
gi|350578011|ref|XP_003480270.1| PREDICTED: general transcription factor IIH subunit 5-like
isoform 2 [Sus scrofa]
gi|350578013|ref|XP_003480271.1| PREDICTED: general transcription factor IIH subunit 5-like
isoform 3 [Sus scrofa]
gi|354481344|ref|XP_003502861.1| PREDICTED: general transcription factor IIH subunit 5-like
[Cricetulus griseus]
gi|397468339|ref|XP_003805845.1| PREDICTED: general transcription factor IIH subunit 5 [Pan
paniscus]
gi|402867838|ref|XP_003898038.1| PREDICTED: general transcription factor IIH subunit 5 [Papio
anubis]
gi|402867840|ref|XP_003898039.1| PREDICTED: general transcription factor IIH subunit 5 [Papio
anubis]
gi|403284962|ref|XP_003933815.1| PREDICTED: general transcription factor IIH subunit 5 [Saimiri
boliviensis boliviensis]
gi|403284964|ref|XP_003933816.1| PREDICTED: general transcription factor IIH subunit 5 [Saimiri
boliviensis boliviensis]
gi|410960282|ref|XP_003986722.1| PREDICTED: general transcription factor IIH subunit 5 [Felis
catus]
gi|426355007|ref|XP_004044930.1| PREDICTED: general transcription factor IIH subunit 5 isoform 1
[Gorilla gorilla gorilla]
gi|426355009|ref|XP_004044931.1| PREDICTED: general transcription factor IIH subunit 5 isoform 2
[Gorilla gorilla gorilla]
gi|67462047|sp|Q6ZYL4.1|TF2H5_HUMAN RecName: Full=General transcription factor IIH subunit 5;
AltName: Full=General transcription factor IIH
polypeptide 5; AltName: Full=TFB5 ortholog; AltName:
Full=TFIIH basal transcription factor complex TTD-A
subunit
gi|122137012|sp|Q2T9Z5.1|TF2H5_BOVIN RecName: Full=General transcription factor IIH subunit 5;
AltName: Full=General transcription factor IIH
polypeptide 5
gi|37994762|gb|AAH60317.1| General transcription factor IIH, polypeptide 5 [Homo sapiens]
gi|46019946|emb|CAG25512.1| TFIIH basal transcription factor complex TTDA subunit [Homo
sapiens]
gi|83405385|gb|AAI11196.1| General transcription factor IIH, polypeptide 5 [Bos taurus]
gi|112180527|gb|AAH56906.1| General transcription factor IIH, polypeptide 5 [Homo sapiens]
gi|119568048|gb|EAW47663.1| general transcription factor IIH, polypeptide 5 [Homo sapiens]
gi|149028307|gb|EDL83723.1| rCG40747, isoform CRA_b [Rattus norvegicus]
gi|149028308|gb|EDL83724.1| rCG40747, isoform CRA_b [Rattus norvegicus]
gi|167773397|gb|ABZ92133.1| general transcription factor IIH, polypeptide 5 [synthetic
construct]
gi|208968459|dbj|BAG74068.1| general transcription factor IIH, polypeptide 5 [synthetic
construct]
gi|296483877|tpg|DAA25992.1| TPA: general transcription factor IIH subunit 5 [Bos taurus]
gi|344235721|gb|EGV91824.1| General transcription factor IIH subunit 5 [Cricetulus griseus]
gi|355561950|gb|EHH18582.1| hypothetical protein EGK_15224 [Macaca mulatta]
gi|355564429|gb|EHH20929.1| hypothetical protein EGK_03881 [Macaca mulatta]
gi|355748798|gb|EHH53281.1| hypothetical protein EGM_13891 [Macaca fascicularis]
gi|380783187|gb|AFE63469.1| general transcription factor IIH subunit 5 [Macaca mulatta]
gi|383414741|gb|AFH30584.1| general transcription factor IIH subunit 5 [Macaca mulatta]
gi|410253736|gb|JAA14835.1| general transcription factor IIH, polypeptide 5 [Pan troglodytes]
gi|410328477|gb|JAA33185.1| general transcription factor IIH, polypeptide 5 [Pan troglodytes]
Length = 71
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ S +KFII +D TH+FV + +++ + E
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60
Query: 61 RDQNSY 66
DQN++
Sbjct: 61 MDQNAF 66
>gi|159164708|pdb|2JNJ|A Chain A, Solution Structure Of The P8 Tfiih Subunit
gi|159164709|pdb|2JNJ|B Chain B, Solution Structure Of The P8 Tfiih Subunit
Length = 74
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ S +KFII +D TH+FV + +++ + E
Sbjct: 4 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 63
Query: 61 RDQNSY 66
DQN++
Sbjct: 64 MDQNAF 69
>gi|225703154|gb|ACO07423.1| TFIIH basal transcription factor complex TTD-A subunit
[Oncorhynchus mykiss]
Length = 71
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF++ +N + +KFII L TH+F+ + +++ + E
Sbjct: 1 MVNVLKGVLVECDPAMKQFLLYLNETSALGKKFIIQDLGDTHVFILAEVVHILQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|357617748|gb|EHJ70975.1| hypothetical protein KGM_16313 [Danaus plexippus]
Length = 73
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 44/66 (66%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF+++++ ++ +KFI+ LD TH+F+ ++ E +++ + +
Sbjct: 1 MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFILQDLDETHVFISSDIVETLQARVDDL 60
Query: 61 RDQNSY 66
DQ S+
Sbjct: 61 MDQFSF 66
>gi|157951657|ref|NP_852057.2| general transcription factor IIH subunit 5 [Mus musculus]
gi|67462069|sp|Q8K2X8.1|TF2H5_MOUSE RecName: Full=General transcription factor IIH subunit 5;
AltName: Full=General transcription factor IIH
polypeptide 5; AltName: Full=TFB5 ortholog; AltName:
Full=TFIIH basal transcription factor complex TTD-A
subunit
gi|20809756|gb|AAH29238.1| General transcription factor IIH, polypeptide 5 [Mus musculus]
gi|26373608|dbj|BAC25328.1| unnamed protein product [Mus musculus]
gi|26376221|dbj|BAC25362.1| unnamed protein product [Mus musculus]
gi|26385792|dbj|BAC25038.1| unnamed protein product [Mus musculus]
gi|26385906|dbj|BAC25043.1| unnamed protein product [Mus musculus]
gi|148669723|gb|EDL01670.1| general transcription factor IIH, polypeptide 5, isoform CRA_b
[Mus musculus]
gi|148669724|gb|EDL01671.1| general transcription factor IIH, polypeptide 5, isoform CRA_b
[Mus musculus]
gi|148669725|gb|EDL01672.1| general transcription factor IIH, polypeptide 5, isoform CRA_b
[Mus musculus]
Length = 71
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ + +KFII +D TH+FV + +++ + E
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDEANALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60
Query: 61 RDQNSY 66
DQN++
Sbjct: 61 MDQNAF 66
>gi|432945341|ref|XP_004083550.1| PREDICTED: general transcription factor IIH subunit 5-like
[Oryzias latipes]
Length = 71
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN KG+ + CD M QF++ ++ +M +KFI+ LD TH+F+ + + ++ + +
Sbjct: 1 MVNVHKGVLVECDPAMKQFLLYLDETMALGRKFILKDLDDTHVFILAEVVQTLQERVGDL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|195114636|ref|XP_002001873.1| GI14600 [Drosophila mojavensis]
gi|193912448|gb|EDW11315.1| GI14600 [Drosophila mojavensis]
Length = 73
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 43/66 (65%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF+++++ + +KFII LD HLF+ ++ E++++ + E
Sbjct: 1 MVNVMKGVLVECDPAMKQFLLHLDEKLALGRKFIIQDLDENHLFISTDIVEVLQARVDEL 60
Query: 61 RDQNSY 66
D+ S+
Sbjct: 61 MDRISF 66
>gi|195161284|ref|XP_002021498.1| GL26481 [Drosophila persimilis]
gi|198472498|ref|XP_002133059.1| GA28879 [Drosophila pseudoobscura pseudoobscura]
gi|194103298|gb|EDW25341.1| GL26481 [Drosophila persimilis]
gi|198139040|gb|EDY70461.1| GA28879 [Drosophila pseudoobscura pseudoobscura]
Length = 73
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 44/66 (66%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF+++++ + +KFII LD +HLF+ ++ E++++ + +
Sbjct: 1 MVNVMKGVLVECDPAMKQFLLHLDEKLALGRKFIIQDLDESHLFISTDIVEVLQARVDDL 60
Query: 61 RDQNSY 66
D+ S+
Sbjct: 61 MDRISF 66
>gi|219120973|ref|XP_002185718.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582567|gb|ACI65188.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 111
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 7 GLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSY 66
G +SCD+P QFI ++N P +KFI+ LD+THL V+ + IR + E+ D N +
Sbjct: 39 GYLVSCDVPTKQFIQHLNDLKPVDKKFILQDLDATHLLVELKARDEIRRKVEEWEDSNVF 98
>gi|355693909|gb|AER99492.1| proteinral transcription factor IIH, polypeptide 5 [Mustela
putorius furo]
Length = 69
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 2 VNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFR 61
VN +KG+ I CD M QF++ ++ S +KFII +D TH+FV + +++ + E
Sbjct: 1 VNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELM 60
Query: 62 DQNSY 66
DQN++
Sbjct: 61 DQNAF 65
>gi|281364435|ref|NP_001137791.2| Tfb5 [Drosophila melanogaster]
gi|194856448|ref|XP_001968752.1| GG24326 [Drosophila erecta]
gi|195342622|ref|XP_002037899.1| GM18045 [Drosophila sechellia]
gi|195472803|ref|XP_002088688.1| GE18705 [Drosophila yakuba]
gi|195550871|ref|XP_002076121.1| GD11985 [Drosophila simulans]
gi|190660619|gb|EDV57811.1| GG24326 [Drosophila erecta]
gi|194132749|gb|EDW54317.1| GM18045 [Drosophila sechellia]
gi|194174789|gb|EDW88400.1| GE18705 [Drosophila yakuba]
gi|194201770|gb|EDX15346.1| GD11985 [Drosophila simulans]
gi|272406899|gb|ACL82997.2| Tfb5 [Drosophila melanogaster]
Length = 73
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 43/66 (65%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF+++++ + +KFII LD HLF+ ++ E++++ + +
Sbjct: 1 MVNVMKGVLVECDPAMKQFLLHLDEKLALGRKFIIQDLDENHLFISTDIVEVLQARVDDL 60
Query: 61 RDQNSY 66
D+ S+
Sbjct: 61 MDRISF 66
>gi|195386090|ref|XP_002051737.1| GJ17109 [Drosophila virilis]
gi|194148194|gb|EDW63892.1| GJ17109 [Drosophila virilis]
Length = 73
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 43/66 (65%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF+++++ + +KFII LD HLF+ ++ E++++ + E
Sbjct: 1 MVNVMKGVLVECDPAMKQFLLHLDEKLALGRKFIIQDLDENHLFISTDIVEVLQARVDEL 60
Query: 61 RDQNSY 66
D+ ++
Sbjct: 61 MDRINF 66
>gi|156363537|ref|XP_001626099.1| predicted protein [Nematostella vectensis]
gi|156212963|gb|EDO33999.1| predicted protein [Nematostella vectensis]
Length = 71
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD + QF+++++ +KF+I LD THLFV + +++ + E
Sbjct: 1 MVNVLKGVLIDCDPAVKQFLLHLDEHNVLGKKFVIEDLDETHLFVSAGIVPILQEKVWEL 60
Query: 61 RDQNSY 66
D NS+
Sbjct: 61 MDTNSF 66
>gi|308811947|ref|XP_003083281.1| unnamed protein product [Ostreococcus tauri]
gi|116055160|emb|CAL57556.1| unnamed protein product [Ostreococcus tauri]
Length = 75
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV+A+ G+ ++ D+P+ Q++++++A P KF+I LD + +QP AE ++ I +
Sbjct: 1 MVSAVHGVMLTTDVPIKQYVLHLDAIAPAEGKFVIADLDERRVLIQPERAEQVKREIERY 60
Query: 61 RDQNSYEKP 69
+ Y P
Sbjct: 61 QQTTQYVAP 69
>gi|395848709|ref|XP_003796991.1| PREDICTED: general transcription factor IIH subunit 5-like
[Otolemur garnettii]
Length = 71
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M F+++ + S +KFII +D TH+FV + +++ + E
Sbjct: 1 MVNILKGVLIECDPAMKLFLLSWDESSALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60
Query: 61 RDQNSY 66
DQN++
Sbjct: 61 MDQNAF 66
>gi|383851540|ref|XP_003701290.1| PREDICTED: general transcription factor IIH subunit 5-like
[Megachile rotundata]
Length = 73
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN KG+ + CD M QF+++++ + +KFII LD HLF+ ++ + +++ + +
Sbjct: 1 MVNVTKGILVECDAAMKQFLLHLDETFALGRKFIIQDLDERHLFISVDILDTLQAKVDDL 60
Query: 61 RDQNSY 66
DQ S+
Sbjct: 61 MDQISF 66
>gi|242011976|ref|XP_002426719.1| TFIIH basal transcription factor complex TTD-A subunit, putative
[Pediculus humanus corporis]
gi|212510890|gb|EEB13981.1| TFIIH basal transcription factor complex TTD-A subunit, putative
[Pediculus humanus corporis]
Length = 71
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV+ +KG+ + CD M QF+++++ ++ +KFII LD THLF+ ++ ++++ + +
Sbjct: 1 MVHVMKGVLVECDQAMKQFLLHLDETLALGKKFIIQDLDDTHLFISSDILYILQTKVDDL 60
Query: 61 RDQNS 65
DQ S
Sbjct: 61 IDQIS 65
>gi|260802554|ref|XP_002596157.1| hypothetical protein BRAFLDRAFT_202865 [Branchiostoma floridae]
gi|229281411|gb|EEN52169.1| hypothetical protein BRAFLDRAFT_202865 [Branchiostoma floridae]
Length = 71
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 42/66 (63%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF+++++ +KF++ LD THLF+ ++ ++++ I +
Sbjct: 1 MVNVLKGVLVECDPAMKQFLLHLDEKNALGRKFVMQDLDDTHLFISADIVDLLQEKIDDL 60
Query: 61 RDQNSY 66
DQ ++
Sbjct: 61 FDQLTF 66
>gi|145354356|ref|XP_001421453.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581690|gb|ABO99746.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 75
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV+A+ G+ I+ D+P+ Q+I+++N P +KF++ LD+ + VQP+ + I I F
Sbjct: 1 MVSAVHGVMITADVPIKQYILHLNDVAPAERKFVVVDLDARRVLVQPDAVDAIHREIEAF 60
Query: 61 RDQNSYEKP 69
+ Y P
Sbjct: 61 QQSTQYVAP 69
>gi|321459369|gb|EFX70423.1| hypothetical protein DAPPUDRAFT_328340 [Daphnia pulex]
Length = 73
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1 MVNAIKGLFISC-DIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAE 59
MVNA +G+ + C D M Q +++++ +P +KFI+H LD TH+F+ E ++S I
Sbjct: 1 MVNATEGVLVECADAAMKQLLLHLDEKLPPDKKFILHDLDETHVFIASKHLEFLQSEIDC 60
Query: 60 FRDQNSY 66
F D S+
Sbjct: 61 FMDSVSF 67
>gi|354466613|ref|XP_003495768.1| PREDICTED: general transcription factor IIH subunit 5-like
[Cricetulus griseus]
Length = 118
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
+VN ++G+ I CD M QF++ ++ S +KFII +D TH+FV + +++ + E
Sbjct: 48 VVNVLRGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAKLVNVLQERVREL 107
Query: 61 RDQNSY 66
DQN++
Sbjct: 108 MDQNAF 113
>gi|412986363|emb|CCO14789.1| unknown protein [Bathycoccus prasinos]
Length = 77
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 1 MVNAIKGLFISCD-IPMAQFIINMNASMPQSQKFII---HILDSTHLFVQPNMAEMIRSA 56
M +AI G ++CD P+ FI +N S+PQ ++FI+ LD HL +Q ++S
Sbjct: 1 MPDAIHGALLTCDNPPIKTFIEALNDSLPQEERFIVSANKTLDEKHLLIQRERVAFVQSK 60
Query: 57 IAEFRDQNSYEKP 69
+ EF D+N Y P
Sbjct: 61 VKEFTDKNQYSAP 73
>gi|289743363|gb|ADD20429.1| putative BBOX Zn-finger protein [Glossina morsitans morsitans]
Length = 73
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 43/66 (65%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF+++++ ++ +KFII LD HLF+ ++ + +++ + +
Sbjct: 1 MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFIIQDLDEKHLFISTDIVDALQARVDDL 60
Query: 61 RDQNSY 66
D+ S+
Sbjct: 61 MDRISF 66
>gi|194761538|ref|XP_001962986.1| GF15714 [Drosophila ananassae]
gi|190616683|gb|EDV32207.1| GF15714 [Drosophila ananassae]
Length = 73
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 43/66 (65%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD M QF+++++ + +KFII LD HLF+ ++ +++++ + +
Sbjct: 1 MVNVMKGVLVECDPAMKQFLLHLDEKLALGRKFIIQDLDEHHLFISTDIVDVLQARVDDL 60
Query: 61 RDQNSY 66
D+ S+
Sbjct: 61 MDRISF 66
>gi|320162828|gb|EFW39727.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 81
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 6 KGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNS 65
KG+ I CD + QF++++++ P +FII +D THLFV P M+++ + E D+N+
Sbjct: 5 KGVLIECDAAIKQFLLHLDSQQPSETRFIIADVDETHLFVDPPSLPMLQTKLDEMLDKNN 64
Query: 66 Y 66
+
Sbjct: 65 F 65
>gi|26378558|dbj|BAC25398.1| unnamed protein product [Mus musculus]
Length = 71
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +K + I CD M QF++ ++ + +KFII +D TH+FV + +++ + E
Sbjct: 1 MVNVLKRVLIECDPAMKQFLLYLDEANALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60
Query: 61 RDQNSY 66
DQN++
Sbjct: 61 MDQNAF 66
>gi|452820555|gb|EME27596.1| TFIIH basal transcription factor complex TTD-A subunit [Galdieria
sulphuraria]
Length = 69
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN ++G+ I+CDIPM QFI+ ++ + +F+I LD T LF+Q ++++ + E
Sbjct: 1 MVNLLRGVLITCDIPMKQFILKLDEDQAPN-RFVIANLDETSLFIQSWALKLVQEKLEEL 59
Query: 61 RDQNSYE 67
++N ++
Sbjct: 60 YEENYFQ 66
>gi|427785875|gb|JAA58389.1| Putative proteinral transcription factor iie tfiie subunit
[Rhipicephalus pulchellus]
Length = 71
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV+ +KG+ + CD M QF+++++ + +KFII LD TH+F+ + E +++ I +
Sbjct: 1 MVHVMKGILVECDPAMKQFLLHLDDTNALGKKFIIQDLDETHVFITAEILETLQNKIDDI 60
Query: 61 RDQNSY 66
DQ S+
Sbjct: 61 MDQISF 66
>gi|58568923|gb|AAW79008.1| GekBS162P [Gekko japonicus]
Length = 72
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILD-STHLFVQPNMAEMIRSAIAE 59
MVN +KG+ I CD M Q + MP +KFII L TH+FV M ++ + E
Sbjct: 1 MVNVLKGILIECDPAMKQSCCTWMSPMPWGKKFIITRLGMKTHVFVLAEMVNCLQEKVGE 60
Query: 60 FRDQNSY 66
DQNS+
Sbjct: 61 LMDQNSF 67
>gi|443715047|gb|ELU07198.1| hypothetical protein CAPTEDRAFT_98035 [Capitella teleta]
Length = 70
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF+++++ + + F+I LD TH+F+ ++ E + S I +
Sbjct: 1 MVNVMKGILIECDPAMKQFLLHLDETNALGRSFVIQDLDETHIFISADILETLTSKIDDL 60
Query: 61 RDQNSYE 67
D+ ++
Sbjct: 61 MDKLHFD 67
>gi|109478021|ref|XP_001069351.1| PREDICTED: general transcription factor IIH subunit 5-like
[Rattus norvegicus]
gi|392340950|ref|XP_003754206.1| PREDICTED: general transcription factor IIH subunit 5-like
[Rattus norvegicus]
Length = 71
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M N +KG+ I CD QF + +N S +KF+I +D TH FV + +++ + E
Sbjct: 1 MANTLKGVLIECDSATKQFFLYLNESNALGKKFVIQDIDDTHAFVIVELVNVLQEQVGEL 60
Query: 61 RDQNS 65
DQN+
Sbjct: 61 MDQNA 65
>gi|241646745|ref|XP_002411111.1| general transcription factor IIE (TFIIE) subunit, putative
[Ixodes scapularis]
gi|215503741|gb|EEC13235.1| general transcription factor IIE (TFIIE) subunit, putative
[Ixodes scapularis]
gi|442749503|gb|JAA66911.1| Putative proteinral transcription factor iie tfiie subunit
[Ixodes ricinus]
Length = 71
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 43/66 (65%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV+ +KG+ + CD M QF+++++ + +KFII LD TH+F+ ++ + +++ I +
Sbjct: 1 MVHVMKGILVECDPAMKQFLLHLDDTNALGRKFIIQDLDETHVFITADILDTLQNKIDDI 60
Query: 61 RDQNSY 66
DQ S+
Sbjct: 61 MDQISF 66
>gi|410931175|ref|XP_003978971.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
Length = 72
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1 MVNAIKGLFISCDIP-MAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAE 59
MVN KG+ + P M +F+++++ +M +KFI+ LD THLF+ + + ++ + E
Sbjct: 1 MVNVHKGVLLGWRDPAMKEFLLHLDETMALGRKFILKDLDETHLFILAEVVQTLQERVGE 60
Query: 60 FRDQNSY 66
DQNS+
Sbjct: 61 LMDQNSF 67
>gi|30038275|gb|AAP12520.1| REX1-S [Chlamydomonas reinhardtii]
Length = 78
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQK--FIIHILDSTHLFVQPNMAEMIRSAIA 58
MV+A KGL + CD+P +I++MN+ K FII LD T L + P IR+A+
Sbjct: 1 MVSAKKGLLLRCDVPTKVYIVHMNSQYRAEGKKEFIIADLDETTLLINPAYELEIRAALK 60
Query: 59 EFRDQNSYE 67
++ D+ ++E
Sbjct: 61 KYSDELTFE 69
>gi|346470273|gb|AEO34981.1| hypothetical protein [Amblyomma maculatum]
Length = 71
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 42/66 (63%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV+ +KG+ + CD M QF+++++ + +KFII LD TH+F+ + + +++ I +
Sbjct: 1 MVHVMKGILVECDPAMKQFLLHLDDTNALGKKFIIQDLDETHVFITAEILDTLQNKIDDI 60
Query: 61 RDQNSY 66
DQ S+
Sbjct: 61 MDQISF 66
>gi|353244120|emb|CCA75569.1| hypothetical protein PIIN_09559 [Piriformospora indica DSM 11827]
Length = 136
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
++ A+KG+ I+CD + Q ++ MN +F+I LD THL ++ + E +R+ +
Sbjct: 67 VMKAVKGVLITCDAAVKQILLQMNERRRDEDRFVIEDLDQTHLLIKADGEENMRAELESE 126
Query: 61 RDQNSY 66
++N+Y
Sbjct: 127 LEKNTY 132
>gi|395535218|ref|XP_003769627.1| PREDICTED: general transcription factor IIH subunit 5, partial
[Sarcophilus harrisii]
Length = 71
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
+V +K + ISCD M QF++ ++ S +KFII +D TH+FV + ++ + E
Sbjct: 1 IVLLLKYIMISCDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVLAELVNFLQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>gi|440802356|gb|ELR23285.1| RNA polymerase II transcription factor B subunit 5, putative
[Acanthamoeba castellanii str. Neff]
Length = 69
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV+A KG+ ++CD M QF++ ++ + FII LD THL V A +I+ + E
Sbjct: 1 MVHATKGVLVTCDATMKQFLLFLD----KEHHFIIKDLDETHLLVDAAKATLIQEKMNEM 56
Query: 61 RDQNSY 66
++N+Y
Sbjct: 57 YEENTY 62
>gi|61680607|pdb|1YDL|A Chain A, Crystal Structure Of The Human Tfiih, Northeast
Structural Genomics Target Hr2045
Length = 79
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 6 KGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNS 65
KG I CD QF++ ++ S +KFII +D TH+FV + +++ + E DQN+
Sbjct: 14 KGXLIECDPAXKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELXDQNA 73
Query: 66 Y 66
+
Sbjct: 74 F 74
>gi|298714804|emb|CBJ25703.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 70
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 6 KGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNS 65
KG+ I+CD+P QFI++++A + ++ LD+TH+FV+ + + I+ + + ++N
Sbjct: 9 KGVLITCDVPTKQFIMSLDARLA----CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNV 64
Query: 66 YEKP 69
Y +P
Sbjct: 65 YVRP 68
>gi|449018827|dbj|BAM82229.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 87
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV+A KG + CD+PM Q +++++ + + FII LD HLFV+ + +I+ ++
Sbjct: 1 MVHATKGYLVRCDVPMKQLLLHLD----REEHFIICDLDEKHLFVKEDALSLIQQSVEAL 56
Query: 61 RDQNSY 66
D+ Y
Sbjct: 57 YDEVYY 62
>gi|196012620|ref|XP_002116172.1| hypothetical protein TRIADDRAFT_30732 [Trichoplax adhaerens]
gi|190581127|gb|EDV21205.1| hypothetical protein TRIADDRAFT_30732 [Trichoplax adhaerens]
Length = 75
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ + CD + Q++++++ + QKF+I LD H+FV + + + I
Sbjct: 1 MVNVLKGVLVECDPTVKQYLLHLDETNALGQKFVIEDLDDQHVFVTAEIKDTLMKKIDAM 60
Query: 61 RDQNSY 66
+Q SY
Sbjct: 61 MEQLSY 66
>gi|225718492|gb|ACO15092.1| General transcription factor IIH subunit 5 [Caligus clemensi]
gi|225719128|gb|ACO15410.1| General transcription factor IIH subunit 5 [Caligus clemensi]
Length = 71
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNA +G+ + CD M QF++ ++ +F++ LDS HLF+ P + ++ I +
Sbjct: 1 MVNATRGVLVECDPAMKQFLLYLDEKEQLGSRFVVQDLDSRHLFISPEILPKLQDRIDDL 60
Query: 61 RDQNS 65
D+ S
Sbjct: 61 MDKIS 65
>gi|225714502|gb|ACO13097.1| General transcription factor IIH subunit 5 [Lepeophtheirus
salmonis]
Length = 71
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +G+ + CD M QF++ ++ +F++ LD+THLF+ P + ++ I +
Sbjct: 1 MVNVTRGVLVECDPAMKQFLLYLDERAELGTRFVVQDLDATHLFISPEILPKLQDRIDDL 60
Query: 61 RDQNS 65
D+ S
Sbjct: 61 MDKIS 65
>gi|313224631|emb|CBY20422.1| unnamed protein product [Oikopleura dioica]
Length = 73
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMP-QSQKFIIHILDSTHLFVQPNMAEMIRSAIAE 59
MVN G ++CD + QF++N++ ++FI+ LD THLFV + ++ +A+
Sbjct: 1 MVNVENGKLVTCDPALKQFLLNLDEKREFGGRRFILKDLDETHLFVTADCDTWLKGRLAD 60
Query: 60 FRDQNSY 66
+NS+
Sbjct: 61 LMTENSF 67
>gi|391346638|ref|XP_003747577.1| PREDICTED: general transcription factor IIH subunit 5-like
[Metaseiulus occidentalis]
Length = 70
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 39/66 (59%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN ++G+ + CD M +F+ +++ + Q FII LD THLF+ + + + + + +
Sbjct: 1 MVNVVRGILVECDAAMKEFLNHLDETRALGQTFIIQDLDETHLFIASEIIDTLLNKVDDL 60
Query: 61 RDQNSY 66
++ S+
Sbjct: 61 MERLSF 66
>gi|348675885|gb|EGZ15703.1| hypothetical protein PHYSODRAFT_333915 [Phytophthora sojae]
Length = 72
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFV--QPNMAEMIRSAIA 58
M A KG+ + CD Q+++++N + Q Q+F+I LD HLF+ P + I +
Sbjct: 1 MPTANKGVLVKCDPATKQYLLHLNETAVQ-QRFVIEDLDDRHLFIVPDPKVIAFIEKKMD 59
Query: 59 EFRDQNSYEKPA 70
E+ ++N+Y+ P
Sbjct: 60 EWNEKNTYQPPT 71
>gi|225710384|gb|ACO11038.1| General transcription factor IIH subunit 5 [Caligus
rogercresseyi]
gi|225710996|gb|ACO11344.1| General transcription factor IIH subunit 5 [Caligus
rogercresseyi]
Length = 71
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNA +G+ ++CD M QF++ ++ +F++ LD HLF+ P + ++ I +
Sbjct: 1 MVNATRGVLVNCDPAMKQFLLYLDEKEELGSRFVVKDLDPNHLFISPEILPKLQDRIDDL 60
Query: 61 RDQNS 65
D+ S
Sbjct: 61 MDKFS 65
>gi|225709208|gb|ACO10450.1| General transcription factor IIH subunit 5 [Caligus
rogercresseyi]
Length = 71
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNA +G+ ++CD M QF++ ++ +F++ LD HLF+ P + ++ I +
Sbjct: 1 MVNATRGVLVNCDPAMKQFLLYLDEKEELGSRFVVKDLDPNHLFISPEILPKLQDRIDDL 60
Query: 61 RDQNS 65
D+ S
Sbjct: 61 MDKFS 65
>gi|311272932|ref|XP_003133650.1| PREDICTED: general transcription factor IIH subunit 5-like [Sus
scrofa]
Length = 69
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV+ +KG+ I CD M QF + ++ S + KFII +D T +FV + +++ + E
Sbjct: 1 MVSILKGVLIECDPAMKQFFLYLDES--SALKFIIQDIDDTQVFVISELVNILQEQVGEL 58
Query: 61 RDQNSY 66
DQN++
Sbjct: 59 MDQNAF 64
>gi|426235002|ref|XP_004011480.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 5 [Ovis aries]
Length = 71
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M+N + G + D M QF++ ++ S +KFII +D TH+FV + +++ + E
Sbjct: 1 MINKMIGXLVQFDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60
Query: 61 RDQNSY 66
DQN++
Sbjct: 61 MDQNAF 66
>gi|388854298|emb|CCF52041.1| related to TFB5-component of general transcription and DNA repair
factor TFIIH [Ustilago hordei]
Length = 65
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 2 VNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFR 61
+ A KG+ ++CD + Q I+ S+ + +FII LD THL + P+ + +RS +
Sbjct: 1 MKAYKGMLLTCDAAVKQLIL----SLDERNRFIIMDLDETHLLISPDRIDWLRSELEVEL 56
Query: 62 DQNSY 66
++N+Y
Sbjct: 57 EKNTY 61
>gi|66826077|ref|XP_646393.1| transcription initiation factor IIH5 [Dictyostelium discoideum
AX4]
gi|74858501|sp|Q55CT8.1|TF2H5_DICDI RecName: Full=General transcription factor IIH subunit 5;
AltName: Full=TFIIH basal transcription factor complex
subunit 5
gi|60474366|gb|EAL72303.1| transcription initiation factor IIH5 [Dictyostelium discoideum
AX4]
Length = 72
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRS---AI 57
MV+ KGLF+ CD P QF+ + + + F + +LD THLF+Q ++I S I
Sbjct: 1 MVHVYKGLFLECDPPTKQFV----EYISKQEHFEVIVLDETHLFLQGGDEKVINSIQRRI 56
Query: 58 AEFRDQNSY 66
+ ++QN+Y
Sbjct: 57 DDLQNQNTY 65
>gi|307108810|gb|EFN57049.1| hypothetical protein CHLNCDRAFT_143775 [Chlorella variabilis]
Length = 78
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV A G+ I+ D+ + +FI ++N P ++FII L +LF++ E ++ +AE+
Sbjct: 1 MVQATHGVLITGDVVLIEFIRSLNEEQPPKERFIIKDLGEKNLFIKDKKVEFVQKKVAEW 60
Query: 61 RDQNSYE 67
+ +E
Sbjct: 61 QQSLRFE 67
>gi|390356035|ref|XP_003728689.1| PREDICTED: general transcription factor IIH subunit 5-like,
partial [Strongylocentrotus purpuratus]
Length = 69
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 10 ISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSY 66
+ D M QF+++++ +KFI+ LD TH+F++P + +++R I + DQN++
Sbjct: 7 LHSDPAMKQFLLHLDEKNKLGKKFILQDLDETHVFIEPEILDVLREKINDLMDQNAF 63
>gi|268575986|ref|XP_002642973.1| Hypothetical protein CBG15257 [Caenorhabditis briggsae]
Length = 72
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAE 59
MVN KG+ ++ D Q +I+++ S KFI+ LD THLF++ ++ M+ S + +
Sbjct: 1 MVNVKKGVLVTSDPAFRQLLIHLDDSRQLGSKFIVRELDDTHLFIEKDIVPMLESKVEQ 59
>gi|406700233|gb|EKD03410.1| hypothetical protein A1Q2_02297 [Trichosporon asahii var. asahii
CBS 8904]
Length = 76
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 2 VNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFR 61
V A G I+CD Q ++++++ + KFI +D THL V+ E I++A+ E
Sbjct: 7 VKAQSGSLITCDSAAKQILLHLDSQRTGNYKFISADIDETHLLVRTEAVEEIKAALQEEL 66
Query: 62 DQNSYEK 68
++N+Y K
Sbjct: 67 EKNTYVK 73
>gi|341891992|gb|EGT47927.1| hypothetical protein CAEBREN_17850 [Caenorhabditis brenneri]
Length = 72
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAE 59
MVN KG+ ++ D Q +I+++ S KFII LD THLF++ + M+ S + +
Sbjct: 1 MVNVKKGVLVTSDPAFRQLLIHLDDSRQLGSKFIIRELDDTHLFIEKEIVPMLESKVEQ 59
>gi|330843024|ref|XP_003293465.1| hypothetical protein DICPUDRAFT_42067 [Dictyostelium purpureum]
gi|325076213|gb|EGC30019.1| hypothetical protein DICPUDRAFT_42067 [Dictyostelium purpureum]
Length = 72
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQ---PNMAEMIRSAI 57
MV+ KGLF+ CD P QF+ + + + F + +LD THLF+Q + I+ I
Sbjct: 1 MVHVYKGLFLECDPPTKQFV----EYISKQEHFEVIVLDETHLFLQAADEKIINTIQRRI 56
Query: 58 AEFRDQNSY 66
+ ++QN+Y
Sbjct: 57 DDLQNQNTY 65
>gi|319411700|emb|CBQ73744.1| related to TFB5-component of general transcription and DNA repair
factor TFIIH [Sporisorium reilianum SRZ2]
Length = 65
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 2 VNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFR 61
+ A KG+ ++CD + Q I+ S+ + +FII LD THL + P+ + +R+ +
Sbjct: 1 MKAYKGMLLTCDAAVKQLIL----SLDERNRFIIMDLDDTHLLISPDRIDWLRAELDVEL 56
Query: 62 DQNSYEKPA 70
++N+Y A
Sbjct: 57 EKNTYTLEA 65
>gi|229367018|gb|ACQ58489.1| General transcription factor IIH subunit 5 [Anoplopoma fimbria]
Length = 73
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 4 AIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQ 63
+I + + D M QF++ ++ M +KFI+ LD TH+F+ + + ++ + E DQ
Sbjct: 6 SIPSAYWTSDPAMKQFLLYLDEKMALGKKFILKDLDDTHVFILTEVVQTLQERVGELMDQ 65
Query: 64 NSY 66
NS+
Sbjct: 66 NSF 68
>gi|324521395|gb|ADY47843.1| General transcription factor IIH subunit 5 [Ascaris suum]
gi|324528270|gb|ADY48894.1| General transcription factor IIH subunit 5 [Ascaris suum]
Length = 71
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN KG+ + CD M Q +++++ S KF++ LD TH+FV + ++ + +
Sbjct: 1 MVNVKKGVLVRCDPAMRQLLVHLDESRALGSKFVVKELDETHIFVDKEIVPILEQKLDQL 60
>gi|340381075|ref|XP_003389047.1| PREDICTED: general transcription factor IIH subunit 5-like
[Amphimedon queenslandica]
Length = 73
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV KG+ + CD + +FI ++ ++FII LD HLF+ +A ++ + +
Sbjct: 1 MVQVTKGVLLKCDTAIKEFIRYLDEKQLLGKRFIIKDLDDHHLFISEGVANHLQGQLDDL 60
Query: 61 RDQNSY 66
+NSY
Sbjct: 61 MLRNSY 66
>gi|225709316|gb|ACO10504.1| General transcription factor IIH subunit 5 [Caligus
rogercresseyi]
Length = 71
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVNA +G+ ++CD M Q ++ ++ +F++ LD HLF+ P + ++ I +
Sbjct: 1 MVNATRGVLVNCDPAMKQSLLYLDEKEELGSRFVVKDLDPNHLFISPEILPKLQDRIDDL 60
Query: 61 RDQNS 65
D+ S
Sbjct: 61 MDKFS 65
>gi|50556278|ref|XP_505547.1| YALI0F17688p [Yarrowia lipolytica]
gi|74632496|sp|Q6C1B5.1|TFB5_YARLI RecName: Full=RNA polymerase II transcription factor B subunit 5;
AltName: Full=General transcription and DNA repair
factor IIH subunit 5; Short=TFIIH subunit 5
gi|49651417|emb|CAG78356.1| YALI0F17688p [Yarrowia lipolytica CLIB122]
Length = 75
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A +G+ I CD + I+N+++S I+ LD THL + P+M E+++ + +
Sbjct: 1 MPKATRGVLIECDPSIKALIVNIDSS---QHNIILDELDDTHLMIHPSMVEVVKQKLNKM 57
Query: 61 RDQNSY 66
+N+Y
Sbjct: 58 LAENTY 63
>gi|332022217|gb|EGI62532.1| General transcription factor IIH subunit 5 [Acromyrmex
echinatior]
Length = 73
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 39/66 (59%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
++N L++ D M QF+++++ + +KFII LD HLF+ ++ E +++ + +
Sbjct: 1 ILNIRTKLYVFSDAAMKQFLLHLDETSALGRKFIIQDLDEKHLFISADILETLQAKVDDL 60
Query: 61 RDQNSY 66
DQ S+
Sbjct: 61 MDQISF 66
>gi|367024019|ref|XP_003661294.1| hypothetical protein MYCTH_2116689 [Myceliophthora thermophila
ATCC 42464]
gi|347008562|gb|AEO56049.1| hypothetical protein MYCTH_2116689 [Myceliophthora thermophila
ATCC 42464]
Length = 73
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV A++G+ + C+ + +++++++ +FII LD THLFV+ M ++++ + E
Sbjct: 1 MVKAVRGVLVECEPAIKSILVHIDST--HHHEFIIEDLDETHLFVKETMLQVLKQKLEE- 57
Query: 61 RDQNSY 66
R + +Y
Sbjct: 58 RLKETY 63
>gi|17556222|ref|NP_497212.1| Protein Y55B1AL.2 [Caenorhabditis elegans]
gi|351065832|emb|CCD61809.1| Protein Y55B1AL.2 [Caenorhabditis elegans]
Length = 71
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAE 59
MVN KG+ ++ D Q +I+++ S KFI+ LD THLF++ + M+ + + +
Sbjct: 1 MVNVKKGVLVTSDPAFRQLLIHLDDSRQLGSKFIVRELDDTHLFIEKEIVPMLENKVEQ 59
>gi|440902221|gb|ELR53034.1| General transcription factor IIH subunit 5 [Bos grunniens mutus]
Length = 65
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 9 FISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSY 66
++ D M QF++ ++ S +KFII +D TH+FV + +++ + E DQN++
Sbjct: 3 YLDSDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAF 60
>gi|410931429|ref|XP_003979098.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
Length = 60
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 18 QFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSY 66
+F+++++ +M +KFI+ LD THLF+ + + ++ + E DQNS+
Sbjct: 7 EFLLHLDETMALGRKFILKDLDETHLFILAEVVQTLQERVGELMDQNSF 55
>gi|112419419|gb|AAI22293.1| Gtf2h5 protein [Danio rerio]
gi|197247098|gb|AAI65473.1| Gtf2h5 protein [Danio rerio]
Length = 56
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 16 MAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSY 66
M QF++ ++ + +KFII LD TH+F+ + ++++ + E DQNS+
Sbjct: 1 MKQFLLYLDETSALGKKFIIQDLDDTHVFILAEVVQILQERVGELMDQNSF 51
>gi|254572714|ref|XP_002493466.1| Component of the RNA polymerase II general transcription and DNA
repair factor TFIIH [Komagataella pastoris GS115]
gi|238033265|emb|CAY71287.1| Component of the RNA polymerase II general transcription and DNA
repair factor TFIIH [Komagataella pastoris GS115]
gi|328354709|emb|CCA41106.1| RNA polymerase II transcription factor B subunit 5 [Komagataella
pastoris CBS 7435]
Length = 71
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M AIKG + CD + I+ ++A +S +I LD THL V N +++ +A
Sbjct: 1 MPRAIKGALVKCDPSIRALILKIDA---ESHDIVIEELDDTHLVVDQNRIPFVKAELARI 57
Query: 61 RDQNSY 66
QNSY
Sbjct: 58 LAQNSY 63
>gi|308481875|ref|XP_003103142.1| hypothetical protein CRE_25692 [Caenorhabditis remanei]
gi|308260518|gb|EFP04471.1| hypothetical protein CRE_25692 [Caenorhabditis remanei]
Length = 72
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAE 59
MVN KG+ ++ D Q +I+++ S KFI+ LD THLF++ + + S + +
Sbjct: 1 MVNVKKGVLVTSDPAFRQLLIHLDDSRQLGSKFIVRELDDTHLFIEKEIVPSLESKVEQ 59
>gi|403368767|gb|EJY84225.1| hypothetical protein OXYTRI_18036 [Oxytricha trifallax]
Length = 73
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 6 KGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNS 65
KG+ I+ D+ ++ M Q + FII +D LF++ + + ++ + EF+++ S
Sbjct: 6 KGILITTDVATKIYL------MQQRENFIIKDIDEYSLFIEESKIDWVKEKVIEFKNKYS 59
Query: 66 YEKP 69
YEKP
Sbjct: 60 YEKP 63
>gi|85541643|sp|Q4P985.2|TFB5_USTMA RecName: Full=RNA polymerase II transcription factor B subunit 5;
AltName: Full=General transcription and DNA repair
factor IIH subunit 5; Short=TFIIH subunit 5
Length = 62
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 2 VNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAI 57
+ A KG+ ++CD + Q I+ S+ + +FII LD THL + P+ + +R+ +
Sbjct: 1 MKAYKGMLLTCDAAVKQLIL----SLDERNRFIIMDLDETHLLISPDRIDWLRAEL 52
>gi|403215435|emb|CCK69934.1| hypothetical protein KNAG_0D01830 [Kazachstania naganishii CBS
8797]
Length = 73
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV A +G+ + CD + I+ +++ I+ LD THL V P E I+S +
Sbjct: 1 MVRARRGVLLQCDASIKALIVQIDSDRSD---LILEELDDTHLLVDPAKVEYIKSELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNDY 63
>gi|170581802|ref|XP_001895844.1| REX1 DNA Repair family protein [Brugia malayi]
gi|170581806|ref|XP_001895846.1| REX1 DNA Repair family protein [Brugia malayi]
gi|158597075|gb|EDP35305.1| REX1 DNA Repair family protein [Brugia malayi]
gi|158597077|gb|EDP35307.1| REX1 DNA Repair family protein [Brugia malayi]
Length = 71
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN KG+ + CD M Q ++ ++ S KF++ LD TH+ V + ++ + +
Sbjct: 1 MVNVKKGVLVRCDPAMRQLLVYLDESRTLGSKFVVKELDETHILVDKEIVPILEQKLDQM 60
>gi|209735872|gb|ACI68805.1| General transcription factor IIH subunit 5 [Salmo salar]
Length = 56
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 16 MAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSY 66
M QF++ ++ + +KFII LD TH+F+ + +++ + E DQNS+
Sbjct: 1 MKQFLLYLDETSALGKKFIIQDLDDTHVFILAEVVHILQERVGELMDQNSF 51
>gi|344295125|ref|XP_003419264.1| PREDICTED: general transcription factor IIH subunit 5-like
[Loxodonta africana]
Length = 95
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 9 FISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSY 66
+ D M QF++ ++ S +KFII +D TH+FV + +++ + E DQN++
Sbjct: 33 LLQSDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVSVLQERVGELMDQNAF 90
>gi|402867842|ref|XP_003898040.1| PREDICTED: general transcription factor IIH subunit 5 [Papio
anubis]
Length = 81
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 2 VNAIKGLFISC---DIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIA 58
V+A F C D M QF++ ++ S +KFII +D TH+FV + +++ +
Sbjct: 9 VSATPRRFCICGLSDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVG 68
Query: 59 EFRDQNSY 66
E DQN++
Sbjct: 69 ELMDQNAF 76
>gi|402583679|gb|EJW77622.1| REX1 DNA repair family protein [Wuchereria bancrofti]
Length = 71
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN KG+ + CD M Q ++ ++ S KF++ LD TH+ + + ++ + +
Sbjct: 1 MVNVKKGVLVRCDPAMRQLLVYLDESRTLGSKFVVKELDETHILIDKEIVPILEQKLDQM 60
>gi|358058159|dbj|GAA96045.1| hypothetical protein E5Q_02706 [Mixia osmundae IAM 14324]
Length = 157
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRS 55
MV A+KG ++CD + Q I+ ++ + KFII LD THL V E I++
Sbjct: 1 MVKALKGSLLTCDAAVKQIILQLD----ERDKFIIADLDETHLLVATERVEDIKA 51
>gi|281348032|gb|EFB23616.1| hypothetical protein PANDA_003107 [Ailuropoda melanoleuca]
Length = 59
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 DIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSY 66
D M QF++ ++ S +KFII +D TH+FV + +++ + E DQN++
Sbjct: 1 DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAF 54
>gi|71018489|ref|XP_759475.1| hypothetical protein UM03328.1 [Ustilago maydis 521]
gi|46098963|gb|EAK84196.1| hypothetical protein UM03328.1 [Ustilago maydis 521]
Length = 109
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 2 VNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAI 57
+ A KG+ ++CD + Q I+ S+ + +FII LD THL + P+ + +R+ +
Sbjct: 48 MKAYKGMLLTCDAAVKQLIL----SLDERNRFIIMDLDETHLLISPDRIDWLRAEL 99
>gi|312067039|ref|XP_003136555.1| hypothetical protein LOAG_00967 [Loa loa]
gi|307768285|gb|EFO27519.1| hypothetical protein LOAG_00967 [Loa loa]
Length = 171
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAE 59
MVN KG+ + CD M Q ++ ++ S KF++ LD TH+ V + ++ + +
Sbjct: 101 MVNVKKGVLVRCDPAMRQLLVYLDESRALGSKFVVKELDETHILVDKEIVPILEQKLDQ 159
>gi|169856443|ref|XP_001834880.1| hypothetical protein CC1G_09807 [Coprinopsis cinerea
okayama7#130]
gi|116504055|gb|EAU86950.1| hypothetical protein CC1G_09807 [Coprinopsis cinerea
okayama7#130]
Length = 65
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 4 AIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQ 63
AIKG+ ++CD + Q ++ MN + Q FII LD HL ++ + +R + ++
Sbjct: 3 AIKGVLLTCDPAVKQILLAMN----EKQNFIIEDLDDYHLVIKADDEMRVRRELEAELEK 58
Query: 64 NSY 66
N+Y
Sbjct: 59 NTY 61
>gi|393222448|gb|EJD07932.1| nucleotide excision repair, TFIIH, subunit [Fomitiporia
mediterranea MF3/22]
Length = 66
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 4 AIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQ 63
AIKG+ ++CD + Q ++ +N + Q FI+ LD H+ ++ +M +R + ++
Sbjct: 3 AIKGVLLTCDAAVKQILLTLN----EKQSFIVDDLDDFHVVIKADMEFNVRRQLEAELEK 58
Query: 64 NSY 66
N+Y
Sbjct: 59 NTY 61
>gi|340923749|gb|EGS18652.1| hypothetical protein CTHT_0052580 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 72
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAE- 59
MV AI+G+ I C+ + I+++++ + FII LD HL V+ NM ++++ + +
Sbjct: 1 MVRAIRGVLIECEPAIKSIIVHLDSI---NHDFIIEDLDDHHLVVKENMVQILKQKLEDR 57
Query: 60 FRDQNSYEKP 69
R+ E+P
Sbjct: 58 LRETYRPEEP 67
>gi|307176132|gb|EFN65830.1| General transcription factor IIH subunit 5 [Camponotus
floridanus]
Length = 59
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 13 DIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSY 66
D M QF+++++ + +KFII LD HLF+ ++ + +++ + + DQ S+
Sbjct: 1 DAAMKQFLLHLDETSALGRKFIIQDLDERHLFISADILDTLQAKVDDLMDQISF 54
>gi|307209702|gb|EFN86560.1| General transcription factor IIH subunit 5 [Harpegnathos
saltator]
Length = 61
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 13 DIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSY 66
D M QF+++++ + +KFII LD HLF+ ++ + +++ + + DQ S+
Sbjct: 1 DAAMKQFLLHLDDTSALGKKFIIQDLDERHLFISADILDTLQAKVDDLMDQISF 54
>gi|409043522|gb|EKM53004.1| hypothetical protein PHACADRAFT_210756 [Phanerochaete carnosa
HHB-10118-sp]
Length = 64
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 3 NAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRD 62
AI+G+ ++CD + Q ++ MN + FII LD HL ++ + +R + +
Sbjct: 2 KAIRGVVLTCDPAVKQILLTMNEKLS----FIIEDLDEHHLVIKADEEWRVRRELEAELE 57
Query: 63 QNSY 66
+N+Y
Sbjct: 58 KNTY 61
>gi|401626331|gb|EJS44283.1| tfb5p [Saccharomyces arboricola H-6]
gi|401837740|gb|EJT41629.1| TFB5-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 72
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A KG I CD + I+ ++A M ++ LD THL V P+ E ++ +
Sbjct: 1 MARARKGALIQCDPSIKALILQIDAKMSD---IVLEELDDTHLLVDPSKVEFVKHELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|50292451|ref|XP_448658.1| hypothetical protein [Candida glabrata CBS 138]
gi|74608889|sp|Q6FM86.1|TFB5_CANGA RecName: Full=RNA polymerase II transcription factor B subunit 5;
AltName: Full=General transcription and DNA repair
factor IIH subunit 5; Short=TFIIH subunit 5
gi|49527970|emb|CAG61621.1| unnamed protein product [Candida glabrata]
Length = 73
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV A +G+ + CD + I+ +++ + I+ LD THL V P E I+ +
Sbjct: 1 MVRARRGVLLKCDPSIKALIVQIDS---ERHDIILEELDETHLLVHPTKVEFIKMELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|367008390|ref|XP_003678695.1| hypothetical protein TDEL_0A01520 [Torulaspora delbrueckii]
gi|359746352|emb|CCE89484.1| hypothetical protein TDEL_0A01520 [Torulaspora delbrueckii]
Length = 72
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A +G I CD + II ++A Q I+ LD THL V P+ E I+ +
Sbjct: 1 MPRARRGALIQCDPSIKALIIQIDA---QRSDIILEELDDTHLLVDPSKVEFIKQELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|256080618|ref|XP_002576576.1| transcription factor complex TTD-A subunit [Schistosoma mansoni]
gi|353233184|emb|CCD80539.1| putative tfiih basal transcription factor complex TTD-A subunit
(General transcription factor IIH polypeptide 5) (TFB5
ortholog) [Schistosoma mansoni]
Length = 73
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN KG+ + CD M QF++++ ++ + F+ LD HLF+ ++ ++ +
Sbjct: 1 MVNVHKGILVKCDPAMKQFLLHLAENLVLGKNFVHTDLDDYHLFIDADILSKLQEKVDGL 60
Query: 61 RDQNSY 66
+ S+
Sbjct: 61 MESLSF 66
>gi|320586504|gb|EFW99174.1| RNA polymerase 2 general transcription and DNA repair factor
tfiih component [Grosmannia clavigera kw1407]
Length = 72
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNM 49
MV AI+G+ + CD + I+N+++ Q+ +II LD L V+ NM
Sbjct: 1 MVRAIRGVLVECDPAIKSIIVNIDS---QNHDYIIEELDEQRLVVKENM 46
>gi|444315786|ref|XP_004178550.1| hypothetical protein TBLA_0B01870 [Tetrapisispora blattae CBS
6284]
gi|387511590|emb|CCH59031.1| hypothetical protein TBLA_0B01870 [Tetrapisispora blattae CBS
6284]
Length = 72
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A +G + CD + I+ ++ S I+ LD THL V P+ E I+ +
Sbjct: 1 MARARRGALLKCDPSIKALIVQIDRS---RHDIILEELDDTHLLVDPSKVEFIKGELNRM 57
Query: 61 RDQNSYE 67
QN Y+
Sbjct: 58 LSQNIYD 64
>gi|151942069|gb|EDN60425.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
gi|190404952|gb|EDV08219.1| RNA polymerase II transcription factor B subunit 5 [Saccharomyces
cerevisiae RM11-1a]
gi|349577147|dbj|GAA22316.1| K7_Tfb5p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 72
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A KG + CD + I+ ++A M ++ LD THL V P+ E ++ +
Sbjct: 1 MARARKGALVQCDPSIKALILQIDAKMSD---IVLEELDDTHLLVDPSKVEFVKHELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|157167982|ref|XP_001663033.1| hypothetical protein AaeL_AAEL012891 [Aedes aegypti]
gi|108870677|gb|EAT34902.1| AAEL012891-PA [Aedes aegypti]
Length = 68
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 8 LFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNS-- 65
++ D M QF+++++ + +KFII LD HLF+ ++ E +++ + + D+ S
Sbjct: 3 IYTEFDPAMKQFLLHLDETQSLGRKFIIQDLDERHLFISTDIIETLQARVDDLMDRISVS 62
Query: 66 -YEKPA 70
+EK A
Sbjct: 63 LHEKEA 68
>gi|390596061|gb|EIN05464.1| nucleotide excision repair TFIIH subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 65
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 3 NAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRD 62
AIKG+ ++CD + Q ++ MN + FII LD H+ ++ + +R + +
Sbjct: 2 KAIKGVLLTCDSAVKQILLTMN----ERWHFIIEDLDDFHVVIKADEEYRVRRELETELE 57
Query: 63 QNSY 66
+N+Y
Sbjct: 58 KNTY 61
>gi|302310540|ref|XP_452724.2| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|85541642|sp|Q6CTL5.2|TFB5_KLULA RecName: Full=RNA polymerase II transcription factor B subunit 5;
AltName: Full=General transcription and DNA repair
factor IIH subunit 5; Short=TFIIH subunit 5
gi|199425013|emb|CAH01575.2| KLLA0C11737p [Kluyveromyces lactis]
Length = 72
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A KG + CD + I+ M+A I LD THL V P+ E I+ +
Sbjct: 1 MTRARKGTLVQCDPSIRALILRMDAD---RNDIIYEELDDTHLLVDPSKVEFIKYELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSENIY 63
>gi|398365465|ref|NP_076886.3| Tfb5p [Saccharomyces cerevisiae S288c]
gi|85541644|sp|Q3E7C1.1|TFB5_YEAST RecName: Full=RNA polymerase II transcription factor B subunit 5;
AltName: Full=General transcription and DNA repair
factor IIH subunit TFB5; Short=TFIIH subunit TFB5
gi|256269865|gb|EEU05124.1| Tfb5p [Saccharomyces cerevisiae JAY291]
gi|259145322|emb|CAY78586.1| Tfb5p [Saccharomyces cerevisiae EC1118]
gi|285811102|tpg|DAA11926.1| TPA: Tfb5p [Saccharomyces cerevisiae S288c]
gi|392300192|gb|EIW11283.1| Tfb5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 72
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A KG + CD + I+ ++A M ++ LD THL V P+ E ++ +
Sbjct: 1 MARARKGALVQCDPSIKALILQIDAKMSD---IVLEELDDTHLLVNPSKVEFVKHELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|149239410|ref|XP_001525581.1| RNA polymerase II transcription factor B subunit 5 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146451074|gb|EDK45330.1| RNA polymerase II transcription factor B subunit 5 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 69
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M+ A KG+ + CD + II ++A P I+ LD THL +Q + ++++ + +
Sbjct: 1 MLVASKGVLVKCDPSIKALIIQIDADSP---GIILEELDDTHLLIQQDKVNVVKNELNKL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|385305192|gb|EIF49182.1| rna polymerase ii transcription factor b subunit 5 [Dekkera
bruxellensis AWRI1499]
Length = 72
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M AIKG + CD + I+N++A + + +I LD THL V P I+ +
Sbjct: 1 MARAIKGSLVQCDPSIKALIVNIDA---EYKDIVIEELDDTHLLVDPAKIPFIKRELNIL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNMY 63
>gi|255732543|ref|XP_002551195.1| RNA polymerase II transcription factor B subunit 5 [Candida
tropicalis MYA-3404]
gi|240131481|gb|EER31041.1| RNA polymerase II transcription factor B subunit 5 [Candida
tropicalis MYA-3404]
Length = 69
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M+ A KG+ + CD + II ++++ P I+ LD THL +Q + +++++ +
Sbjct: 1 MLVASKGVLVQCDPSIKALIIQIDSTSP---GIILEELDDTHLLIQHDKVDIVKAELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|157167988|ref|XP_001663036.1| hypothetical protein AaeL_AAEL012900 [Aedes aegypti]
gi|170059029|ref|XP_001865183.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|108870680|gb|EAT34905.1| AAEL012900-PA [Aedes aegypti]
gi|167877878|gb|EDS41261.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 58
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 16 MAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNS---YEKPA 70
M QF+++++ + +KFII LD HLF+ ++ E +++ + + D+ S +EK A
Sbjct: 1 MKQFLLHLDETQSLGRKFIIQDLDERHLFISTDIIETLQARVDDLMDRISVSLHEKEA 58
>gi|310793605|gb|EFQ29066.1| transcription factor TFIIH complex subunit Tfb5 [Glomerella
graminicola M1.001]
gi|380483346|emb|CCF40678.1| RNA polymerase II transcription factor B subunit 5
[Colletotrichum higginsianum]
Length = 71
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAE 59
M AI+G+ I CD + I+N++++ + +II LD H+ V+ NM ++ + E
Sbjct: 1 MPRAIRGVLIECDPSIKSIIVNIDSN---NHDYIIEDLDDQHVVVKENMVAALKRQLDE 56
>gi|429852198|gb|ELA27345.1| RNA polymerase ii transcription factor b subunit 5
[Colletotrichum gloeosporioides Nara gc5]
Length = 71
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAE 59
M AI+G+ I CD + I+N++A+ + +II LD H+ V+ NM ++ + +
Sbjct: 1 MPRAIRGVLIECDPSIKSIIVNIDAA---NHDYIIEDLDDQHVVVKENMVAALKRQLDD 56
>gi|328858931|gb|EGG08042.1| hypothetical protein MELLADRAFT_85226 [Melampsora larici-populina
98AG31]
Length = 83
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQS-------QKFIIHILDSTHLFVQPNMAEMI 53
MV A+KG+ ++CD + Q I+++N S FI+ LD THL V + +
Sbjct: 1 MVRAVKGVLLTCDPAVKQLILSLNDKPANSISTNGLVPPFIVQDLDDTHLLVTQDCIGPL 60
Query: 54 RSAI-AEFR 61
R+ I E R
Sbjct: 61 RAEIETEVR 69
>gi|322710234|gb|EFZ01809.1| RNA polymerase II transcription factor B subunit 5 [Metarhizium
anisopliae ARSEF 23]
Length = 67
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M AI+G+ I CD + I+N+++ + FII LD + V+ NM +++ + +
Sbjct: 1 MPRAIRGVLIECDPSIKSIIVNIDS---DNHDFIIEDLDEERVVVKENMVPLLKQKLEDV 57
Query: 61 R 61
R
Sbjct: 58 R 58
>gi|354546008|emb|CCE42737.1| hypothetical protein CPAR2_203800 [Candida parapsilosis]
Length = 69
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M+ A KG+ + CD + II +++ P ++ LD THL +Q + E I++ + +
Sbjct: 1 MLVASKGVLVKCDPSIKALIIQIDSVNP---GIVLEELDDTHLLIQQDKVETIKNELNKM 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|392563004|gb|EIW56184.1| nucleotide excision repair TFIIH subunit [Trametes versicolor
FP-101664 SS1]
gi|392563005|gb|EIW56185.1| nucleotide excision repair TFIIH subunit [Trametes versicolor
FP-101664 SS1]
Length = 64
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 4 AIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQ 63
AI+G+ ++CD + Q ++ +N + + FII LD H+ ++ + +R + ++
Sbjct: 3 AIRGVLLTCDSAVKQILLTLN----EKENFIIEDLDDFHVVIKADEEYRVRRELEAELEK 58
Query: 64 NSY 66
N+Y
Sbjct: 59 NTY 61
>gi|366990209|ref|XP_003674872.1| hypothetical protein NCAS_0B04150 [Naumovozyma castellii CBS
4309]
gi|342300736|emb|CCC68499.1| hypothetical protein NCAS_0B04150 [Naumovozyma castellii CBS
4309]
Length = 72
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A +G+ + CD + I+ ++A Q I+ LD THL V P+ + I+ +
Sbjct: 1 MPRARRGVLVQCDPSIKALIVQIDA---QRSDIILEELDDTHLLVDPSKVDFIKQELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|409077259|gb|EKM77626.1| hypothetical protein AGABI1DRAFT_115178 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426193109|gb|EKV43043.1| hypothetical protein AGABI2DRAFT_138923 [Agaricus bisporus var.
bisporus H97]
Length = 64
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 3 NAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRD 62
AIKG+ CD + Q ++ MN + Q FII LD HL ++ + +R + +
Sbjct: 2 RAIKGVLFFCDPAVKQILLVMN----EKQSFIIEDLDDHHLVIKADEEYRVRRELETELE 57
Query: 63 QNSY 66
+N+Y
Sbjct: 58 KNTY 61
>gi|46136925|ref|XP_390154.1| hypothetical protein FG09978.1 [Gibberella zeae PH-1]
Length = 90
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M AI+G+ I CD + I++++++ + +II LD + V+ NM M+++ + +
Sbjct: 1 MPRAIRGVLIECDPSIKSIIVSIDSA---NHDYIIEDLDDERVVVKENMVSMLKAKLEDV 57
Query: 61 R 61
R
Sbjct: 58 R 58
>gi|85541640|sp|P0C0X3.1|TFB5_CANAL RecName: Full=RNA polymerase II transcription factor B subunit 5;
AltName: Full=General transcription and DNA repair
factor IIH subunit 5; Short=TFIIH subunit 5
gi|238878838|gb|EEQ42476.1| RNA polymerase II transcription factor B subunit 5 [Candida
albicans WO-1]
Length = 69
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M+ A KG+ + CD + II +++S S I+ LD THL +Q + ++S +
Sbjct: 1 MLVASKGVLVQCDPSIKALIIQIDSS---SSGIILEELDETHLLIQHDKVNFVKSELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|448100558|ref|XP_004199380.1| Piso0_002817 [Millerozyma farinosa CBS 7064]
gi|448104259|ref|XP_004200239.1| Piso0_002817 [Millerozyma farinosa CBS 7064]
gi|359380802|emb|CCE83043.1| Piso0_002817 [Millerozyma farinosa CBS 7064]
gi|359381661|emb|CCE82120.1| Piso0_002817 [Millerozyma farinosa CBS 7064]
Length = 69
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M++A+KG +SCD + I+ +++ + II LD THL + N + ++ +
Sbjct: 1 MLSAVKGALVSCDPSIKALILKIDS---ERHDIIIEELDETHLVIDQNKIDFVKLELNRL 57
Query: 61 RDQNSYE 67
+N Y+
Sbjct: 58 LSKNIYD 64
>gi|60692150|gb|AAX30612.1| SJCHGC05705 protein [Schistosoma japonicum]
Length = 73
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN KG+ + CD M QF++++ ++ + F+ LD HLF+ ++ ++ +
Sbjct: 1 MVNVHKGILVKCDPAMKQFLLHLAENLILGKNFVHTDLDDYHLFIDADILCKLQEKVDGL 60
Query: 61 RDQNSY 66
+ S+
Sbjct: 61 MESLSF 66
>gi|395818350|ref|XP_003782596.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 5-like [Otolemur garnettii]
Length = 94
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 4 AIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQ 63
++G+ I CD M Q ++ + +KF++ D H+FV M +++ + DQ
Sbjct: 27 CLEGVLIECDPTMKQLLLYSDEPRVLGKKFVLXDXDDIHIFVTAEMVNVLQEXMGGLMDQ 86
Query: 64 NSY 66
N +
Sbjct: 87 NIF 89
>gi|123967374|ref|XP_001276879.1| transcription factor IIH [Trichomonas vaginalis G3]
gi|121918865|gb|EAY23631.1| transcription factor IIH, putative [Trichomonas vaginalis G3]
Length = 84
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 7 GLFISCDIP-MAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAI 57
G FI C P + +++I +N+ P KFII +D +LF++ +++ ++ I
Sbjct: 9 GEFIECTDPAIREYLIFLNSKEPAEHKFIITDIDDRYLFIKAGVSDKLKEKI 60
>gi|358387913|gb|EHK25507.1| hypothetical protein TRIVIDRAFT_167757 [Trichoderma virens
Gv29-8]
Length = 58
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M AI+G+ I CD + I+N+++ + FII LD + V+ NM +++ + +
Sbjct: 1 MPRAIRGVLIECDPSIKSIIVNIDSV---NHDFIIEDLDEERVVVKENMVHLLKQKLEDV 57
Query: 61 R 61
R
Sbjct: 58 R 58
>gi|344302095|gb|EGW32400.1| RNA polymerase II transcription factor B subunit 5 [Spathaspora
passalidarum NRRL Y-27907]
Length = 69
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M+ A KG+ + CD + I+ ++A P ++ LD THL +Q + +++++ + +
Sbjct: 1 MLVASKGVLVQCDPSIRALILQIDAESP---GIVLEELDDTHLLIQHDKVQIVKNELNKL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|340515353|gb|EGR45608.1| predicted protein [Trichoderma reesei QM6a]
Length = 71
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M AI+G+ I CD + I+N+++ + FII LD + V+ NM ++++ + +
Sbjct: 1 MPRAIRGVLIECDPSIKSIIVNIDSV---NHDFIIEDLDEERVVVKENMVQLLKQKLEDR 57
Query: 61 RDQN 64
+N
Sbjct: 58 LKEN 61
>gi|156847309|ref|XP_001646539.1| hypothetical protein Kpol_1055p36 [Vanderwaltozyma polyspora DSM
70294]
gi|156117217|gb|EDO18681.1| hypothetical protein Kpol_1055p36 [Vanderwaltozyma polyspora DSM
70294]
Length = 72
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A +G + CD + II M++ + I+ LD THL V P E I+ +
Sbjct: 1 MARARRGALVQCDPSIKALIIQMDS---EHNDIILEELDDTHLLVDPTKIEYIKHELNRM 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|197107384|pdb|3DGP|B Chain B, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
gi|197107450|pdb|3DOM|B Chain B, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
gi|197107452|pdb|3DOM|D Chain D, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 71
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 4 AIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQ 63
A KG + CD + I+ ++A M ++ LD THL V P+ E ++ + +
Sbjct: 3 ARKGALVQCDPSIKALILQIDAKMSD---IVLEELDDTHLLVNPSKVEFVKHELNRLLSK 59
Query: 64 NSY 66
N Y
Sbjct: 60 NIY 62
>gi|345567603|gb|EGX50532.1| hypothetical protein AOL_s00075g168 [Arthrobotrys oligospora ATCC
24927]
Length = 76
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPN-MAEMIR 54
MV AIKG+ + CD + I+++++ ++ I+ LD +HL ++ N +AE+ R
Sbjct: 1 MVRAIKGVLVECDPSIKAIILDIDS---KTHDIIVENLDESHLIIKDNKVAELKR 52
>gi|443918391|gb|ELU38873.1| Tbf5 domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 610
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 2 VNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAI---A 58
+ A KG+ ++CD + Q ++ ++ MP FII +D TH+ V+ + + IR A+ +
Sbjct: 108 MRAFKGVLLTCDPAVKQILLILD-KMPGQGGFIIKDIDDTHVLVRADDVKRIRIALEQES 166
Query: 59 EFR 61
E+R
Sbjct: 167 EYR 169
>gi|365981847|ref|XP_003667757.1| hypothetical protein NDAI_0A03570 [Naumovozyma dairenensis CBS
421]
gi|343766523|emb|CCD22514.1| hypothetical protein NDAI_0A03570 [Naumovozyma dairenensis CBS
421]
Length = 72
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A +G + CD + I+ ++A Q I+ LD THL V PN I+ +
Sbjct: 1 MARARRGALLQCDPSIKALIVQIDA---QRSDIILEELDDTHLLVDPNKVAFIKFELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|448526563|ref|XP_003869366.1| Tfb5 protein [Candida orthopsilosis Co 90-125]
gi|380353719|emb|CCG23231.1| Tfb5 protein [Candida orthopsilosis]
Length = 69
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M+ A KG+ + CD + II +++ P ++ LD THL +Q + + +++ + +
Sbjct: 1 MLVASKGVLVKCDPSIKALIIQIDSVTP---GIVLEELDDTHLLIQQDKVDTVKNELNKM 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|401886221|gb|EJT50272.1| hypothetical protein A1Q1_00466 [Trichosporon asahii var. asahii
CBS 2479]
Length = 71
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 11 SCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFRDQNSYEK 68
S D Q ++++++ + KFI +D THL V+ E I++A+ E ++N+Y K
Sbjct: 11 SGDSAAKQILLHLDSQRTGNYKFISADIDETHLLVRTEAVEEIKAALQEELEKNTYVK 68
>gi|19112947|ref|NP_596155.1| transcription factor TFIIH complex subunit Tfb5 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74624460|sp|Q9HDW3.1|TFB5_SCHPO RecName: Full=RNA polymerase II transcription factor B subunit 5;
AltName: Full=General transcription and DNA repair
factor IIH subunit 5; Short=TFIIH subunit 5
gi|12231165|emb|CAC22107.1| transcription factor TFIIH complex subunit Tfb5 (predicted)
[Schizosaccharomyces pombe]
Length = 68
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 1 MVNAIKGLF-ISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAE 59
M A KGL + CD + Q I+NM+ QS +I +D L V + E +++ +
Sbjct: 1 MPRAQKGLLLVECDPTVKQLILNMDE---QSPGIVIEEIDEERLLVNESRLEQVKAELER 57
Query: 60 FRDQNSYE 67
++N+Y+
Sbjct: 58 RLEENTYQ 65
>gi|367001546|ref|XP_003685508.1| hypothetical protein TPHA_0D04400 [Tetrapisispora phaffii CBS
4417]
gi|357523806|emb|CCE63074.1| hypothetical protein TPHA_0D04400 [Tetrapisispora phaffii CBS
4417]
Length = 72
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A KG I CD + II +++ + I+ LD TH+ V P E I+ +
Sbjct: 1 MARARKGALIQCDPSIKALIIQIDS---EYNDIILEELDETHILVDPRKVEYIKQELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|410516936|sp|Q4HYI0.3|TFB5_GIBZE RecName: Full=RNA polymerase II transcription factor B subunit 5;
AltName: Full=General transcription and DNA repair
factor IIH subunit 5; Short=TFIIH subunit 5
gi|408396775|gb|EKJ75929.1| hypothetical protein FPSE_03877 [Fusarium pseudograminearum
CS3096]
Length = 71
Score = 37.4 bits (85), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M AI+G+ I CD + I++++++ + +II LD + V+ NM M+++ + +
Sbjct: 1 MPRAIRGVLIECDPSIKSIIVSIDSA---NHDYIIEDLDDERVVVKENMVSMLKAKLEDR 57
Query: 61 RDQN 64
+N
Sbjct: 58 LKEN 61
>gi|405118013|gb|AFR92788.1| hypothetical protein CNAG_00659 [Cryptococcus neoformans var.
grubii H99]
Length = 78
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%)
Query: 2 VNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEFR 61
V G+ ++CD Q ++++++ KF+I +D + ++ EMI+ +
Sbjct: 8 VKITSGVLVTCDSAAKQILLHLDSMRDGPSKFVIRDVDENRVMIKKEYVEMIKDELQTEL 67
Query: 62 DQNSY 66
++N+Y
Sbjct: 68 EKNTY 72
>gi|358390277|gb|EHK39683.1| hypothetical protein TRIATDRAFT_82169 [Trichoderma atroviride IMI
206040]
Length = 71
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M AI+G+ I CD + I+N+++ + FII LD + V+ NM +++ + +
Sbjct: 1 MPRAIRGVLIECDPSIKSIIVNIDSV---NHDFIIEDLDEERVVVKENMVHLLKQKLEDR 57
Query: 61 RDQN 64
+N
Sbjct: 58 LKEN 61
>gi|294655621|ref|XP_457795.2| DEHA2C02662p [Debaryomyces hansenii CBS767]
gi|218511850|sp|Q6BVH4.2|TFB5_DEBHA RecName: Full=RNA polymerase II transcription factor B subunit 5;
AltName: Full=General transcription and DNA repair
factor IIH subunit 5; Short=TFIIH subunit 5
gi|199430473|emb|CAG85835.2| DEHA2C02662p [Debaryomyces hansenii CBS767]
Length = 69
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M +AIKG+ + CD + I+ +++ + +I LD THL + N + +++ +
Sbjct: 1 MPSAIKGVMVQCDPSIKALILKIDS---ERHDIVIEELDETHLVIDSNKVQAVKNELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|403164641|ref|XP_003890117.1| hypothetical protein PGTG_21254 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165252|gb|EHS62882.1| hypothetical protein PGTG_21254 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 78
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQ--------KFIIHILDSTHLFVQPNMAEM 52
MV A KG+ ++CD Q I+ +N P Q FII LD THL V
Sbjct: 1 MVKAHKGVLVTCDPAAKQLILKLN-DQPDHQISEFGLVTPFIIQELDDTHLMVTQECVNA 59
Query: 53 IRSAIAEFRDQNSY 66
++ + ++N++
Sbjct: 60 LKKQLEAELEKNTF 73
>gi|389635777|ref|XP_003715541.1| hypothetical protein MGG_15089 [Magnaporthe oryzae 70-15]
gi|351647874|gb|EHA55734.1| hypothetical protein MGG_15089 [Magnaporthe oryzae 70-15]
gi|440465032|gb|ELQ34375.1| hypothetical protein OOU_Y34scaffold00768g19 [Magnaporthe oryzae
Y34]
gi|440482020|gb|ELQ62547.1| hypothetical protein OOW_P131scaffold01066g6 [Magnaporthe oryzae
P131]
Length = 93
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIR 54
M A+ G+ I+CD + I+++N + I+ +D THL ++ +M +M++
Sbjct: 1 MPKAVHGVLITCDPSIKSIIVDINNTR---NDIIVEDIDDTHLLIKESMVDMLK 51
>gi|254578892|ref|XP_002495432.1| ZYRO0B11242p [Zygosaccharomyces rouxii]
gi|238938322|emb|CAR26499.1| ZYRO0B11242p [Zygosaccharomyces rouxii]
Length = 72
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A +G I CD + I+ ++A I+ LD THL + P E I+ +
Sbjct: 1 MPRARRGALIQCDPSIKALIVQIDAD---KSDIILEELDDTHLLIDPAKVEFIKRELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>gi|378754513|gb|EHY64544.1| hypothetical protein NERG_02354 [Nematocida sp. 1 ERTm2]
Length = 66
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIA 58
MV AIKG I CD + Q +I +N + FII +D LFV I A
Sbjct: 1 MVKAIKGTLIECDPSVKQIVIRLN----REHNFIIQEIDDNTLFVDSKYISKIEEETA 54
>gi|156100489|ref|XP_001615972.1| REX1 DNA repair protein [Plasmodium vivax Sal-1]
gi|148804846|gb|EDL46245.1| REX1 DNA repair protein, putative [Plasmodium vivax]
Length = 67
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAI 57
MV AIKG+ + CD P Q I+ MN + + F+I + T + N+ + + +
Sbjct: 1 MVTAIKGVLVKCDEPTMQIILLMN----EDKNFLIEKISETVCLCKENVYDFLEKEV 53
>gi|221059617|ref|XP_002260454.1| nucleotide excision repair protein [Plasmodium knowlesi strain H]
gi|193810527|emb|CAQ41721.1| nucleotide excision repair protein, putative [Plasmodium knowlesi
strain H]
gi|389585436|dbj|GAB68167.1| REX1 DNA repair protein, partial [Plasmodium cynomolgi strain B]
Length = 67
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAI 57
MV AIKG+ + CD P Q I+ MN + + F+I + T + N+ + + +
Sbjct: 1 MVTAIKGVLVKCDEPTMQIILLMN----EGKNFLIEKISDTVCLCKENVYDFLEKEV 53
>gi|403164639|ref|XP_003890116.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165251|gb|EHS62881.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 73
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQ--------KFIIHILDSTHLFVQPNMAEM 52
MV A KG+ ++CD Q I+ +N P Q FII LD THL V
Sbjct: 1 MVKAHKGVLVTCDPAAKQLILKLN-DQPDHQISEFGLVTPFIIQELDDTHLMVTQECVNA 59
Query: 53 IRSAI-AEFR 61
++ + AE R
Sbjct: 60 LKKQLEAEVR 69
>gi|346326849|gb|EGX96445.1| DNA repair protein Rex1 [Cordyceps militaris CM01]
gi|400598715|gb|EJP66422.1| RNA polymerase II transcription factor B subunit 5 [Beauveria
bassiana ARSEF 2860]
Length = 71
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M AI+ + I CD + I+N+++ ++ FII LD + V+ NM +++ + +
Sbjct: 1 MPRAIRSVLIECDPSIKSIIVNIDS---ENHDFIIEDLDEERVVVKENMVPLLKQKLEDR 57
Query: 61 RDQN 64
+N
Sbjct: 58 LKEN 61
>gi|387593406|gb|EIJ88430.1| hypothetical protein NEQG_01120 [Nematocida parisii ERTm3]
gi|387597063|gb|EIJ94683.1| hypothetical protein NEPG_00206 [Nematocida parisii ERTm1]
Length = 66
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFV 45
MV AIKG I CD + Q II +N + FII +D LF+
Sbjct: 1 MVKAIKGALIECDPSIKQIIIRLN----RESNFIIQEIDDNTLFI 41
>gi|392576801|gb|EIW69931.1| hypothetical protein TREMEDRAFT_29558 [Tremella mesenterica DSM
1558]
Length = 73
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 2 VNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIR 54
V G+ I+CD Q ++++++ KFI+ +D TH+ V+ E+++
Sbjct: 10 VKLTSGVLITCDSAAKQILLHIDSQRDGPSKFILRDIDETHVLVKKEHIEIMK 62
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 893,955,641
Number of Sequences: 23463169
Number of extensions: 24233025
Number of successful extensions: 60761
Number of sequences better than 100.0: 198
Number of HSP's better than 100.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 60582
Number of HSP's gapped (non-prelim): 198
length of query: 70
length of database: 8,064,228,071
effective HSP length: 42
effective length of query: 28
effective length of database: 7,078,774,973
effective search space: 198205699244
effective search space used: 198205699244
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 69 (31.2 bits)