Query 035193
Match_columns 70
No_of_seqs 52 out of 54
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 09:58:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 95.8 0.017 3.6E-07 40.1 4.1 40 21-68 185-224 (237)
2 PF00335 Tetraspannin: Tetrasp 92.2 0.077 1.7E-06 33.7 1.3 44 17-68 174-217 (221)
3 KOG3236 Predicted membrane pro 63.6 7.2 0.00016 29.7 2.6 35 17-51 57-91 (225)
4 COG4499 Predicted membrane pro 63.5 8.7 0.00019 31.7 3.2 27 25-51 187-232 (434)
5 COG1478 GTP and metal dependen 56.5 2.6 5.7E-05 32.6 -0.8 43 16-62 122-167 (257)
6 cd03164 CD53_like_LEL Tetraspa 49.2 16 0.00034 21.4 1.9 29 11-39 48-85 (86)
7 PF04494 TFIID_90kDa: WD40 ass 49.1 9.1 0.0002 25.5 1.0 31 11-41 5-35 (142)
8 PF12921 ATP13: Mitochondrial 48.9 13 0.00027 24.7 1.7 18 21-38 14-31 (126)
9 PF10163 EnY2: Transcription f 47.8 13 0.00028 23.2 1.5 22 21-42 12-33 (86)
10 PF14995 TMEM107: Transmembran 47.5 25 0.00053 23.8 2.9 42 16-68 30-71 (124)
11 PF06385 Baculo_LEF-11: Baculo 47.3 14 0.0003 24.6 1.6 15 23-37 34-48 (94)
12 PF08888 HopJ: HopJ type III e 45.9 14 0.00031 25.4 1.5 29 9-37 73-102 (111)
13 cd08044 TAF5_NTD2 TAF5_NTD2 is 44.9 8.7 0.00019 25.2 0.4 23 18-40 1-23 (133)
14 PF06855 DUF1250: Protein of u 44.2 22 0.00048 20.0 2.0 21 16-37 10-30 (46)
15 cd06403 PB1_Par6 The PB1 domai 43.5 22 0.00047 23.3 2.1 29 9-37 7-36 (80)
16 PF07798 DUF1640: Protein of u 41.4 23 0.0005 24.3 2.1 30 28-67 143-173 (177)
17 PF15050 SCIMP: SCIMP protein 41.0 21 0.00047 25.3 1.9 31 30-69 2-32 (133)
18 PF15183 MRAP: Melanocortin-2 37.1 30 0.00065 23.2 2.0 16 36-51 38-53 (90)
19 KOG2804 Phosphorylcholine tran 36.1 27 0.00058 28.2 1.9 19 15-34 156-174 (348)
20 KOG2987 Fatty acid desaturase 36.1 25 0.00054 28.1 1.8 13 39-51 43-55 (324)
21 PF05686 Glyco_transf_90: Glyc 35.5 23 0.0005 27.5 1.5 35 11-45 256-293 (395)
22 PF10805 DUF2730: Protein of u 35.3 25 0.00054 22.8 1.4 19 28-47 1-19 (106)
23 TIGR02183 GRXA Glutaredoxin, G 33.8 30 0.00066 20.7 1.5 16 23-38 69-84 (86)
24 PRK10617 cytochrome c-type pro 33.3 56 0.0012 23.8 3.1 25 20-48 6-30 (200)
25 KOG0109 RNA-binding protein LA 33.2 17 0.00037 29.3 0.4 20 10-29 169-188 (346)
26 smart00526 H15 Domain in histo 32.8 43 0.00092 19.3 2.0 20 19-38 19-39 (66)
27 COG4844 Uncharacterized protei 32.0 27 0.00058 22.9 1.1 12 25-36 65-76 (78)
28 smart00672 CAP10 Putative lipo 31.4 46 0.001 24.4 2.4 34 11-44 187-223 (256)
29 PF14278 TetR_C_8: Transcripti 29.8 51 0.0011 18.0 1.9 16 25-40 4-19 (77)
30 COG2976 Uncharacterized protei 28.5 40 0.00087 25.3 1.7 24 23-49 9-32 (207)
31 KOG3787 Glutamate/aspartate an 28.5 62 0.0013 27.3 2.9 37 20-69 1-37 (507)
32 PF03158 DUF249: Multigene fam 28.3 26 0.00056 26.1 0.7 12 33-44 86-97 (192)
33 PF06926 Rep_Org_C: Putative r 27.9 36 0.00078 23.0 1.2 21 13-33 51-72 (95)
34 PRK02261 methylaspartate mutas 27.8 33 0.00072 22.9 1.1 19 19-37 117-135 (137)
35 PF11188 DUF2975: Protein of u 26.2 82 0.0018 19.4 2.6 21 31-51 56-76 (136)
36 cd00059 FH Forkhead (FH), also 26.1 46 0.001 20.7 1.4 19 21-39 20-38 (78)
37 KOG3462 Predicted membrane pro 25.0 47 0.001 22.8 1.4 30 15-44 29-60 (105)
38 PF07912 ERp29_N: ERp29, N-ter 24.9 31 0.00067 24.2 0.5 29 9-37 90-120 (126)
39 PF04350 PilO: Pilus assembly 24.7 39 0.00085 21.3 0.9 14 21-34 93-106 (144)
40 PRK13293 F420-0--gamma-glutamy 23.8 20 0.00043 27.2 -0.6 43 16-62 120-165 (245)
41 PRK06654 fliL flagellar basal 22.6 52 0.0011 24.0 1.3 15 36-50 31-45 (181)
42 PLN02733 phosphatidylcholine-s 22.4 1.1E+02 0.0023 24.5 3.2 43 1-43 240-318 (440)
43 PF12273 RCR: Chitin synthesis 22.4 41 0.00088 22.0 0.7 12 40-51 1-12 (130)
44 PF13228 DUF4037: Domain of un 22.1 50 0.0011 21.2 1.1 19 17-35 17-35 (100)
45 KOG4016 Synaptic vesicle prote 21.8 1.4E+02 0.0031 23.0 3.6 54 4-59 121-176 (233)
46 cd00593 RIBOc RIBOc. Ribonucle 21.4 64 0.0014 19.8 1.4 38 6-43 33-70 (133)
47 PF08671 SinI: Anti-repressor 21.0 74 0.0016 17.1 1.4 10 26-35 20-29 (30)
48 PRK13294 F420-0--gamma-glutamy 20.3 23 0.0005 28.3 -1.0 43 16-62 120-165 (448)
49 TIGR03826 YvyF flagellar opero 20.2 58 0.0013 22.6 1.1 14 24-37 31-44 (137)
50 PF08511 COQ9: COQ9; InterPro 20.1 85 0.0018 19.8 1.8 21 19-39 51-71 (79)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=95.78 E-value=0.017 Score=40.11 Aligned_cols=40 Identities=25% Similarity=0.389 Sum_probs=37.5
Q ss_pred CCCChHHHHHHHhhhhhhHhhhhhhhhhhhcccccccchhHHHHHhhh
Q 035193 21 RTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVV 68 (70)
Q Consensus 21 pTG~f~~~~~Fv~~N~~IckWV~L~vv~~Q~~f~~~~~~Ls~llAmvL 68 (70)
..|=++.+++++++|..+..++++++.++|. +.+++|+.|
T Consensus 185 ~~GC~~~~~~~~~~~~~~i~~~~~~i~~~~~--------~~~~~a~~l 224 (237)
T KOG3882|consen 185 TEGCLEKLSSWLESNLLIIGGVGLGIAVLEL--------LGMILACCL 224 (237)
T ss_pred ccccHHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 4688899999999999999999999999999 999999976
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=92.20 E-value=0.077 Score=33.66 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=13.9
Q ss_pred CCCCCCCChHHHHHHHhhhhhhHhhhhhhhhhhhcccccccchhHHHHHhhh
Q 035193 17 IPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVV 68 (70)
Q Consensus 17 iP~DpTG~f~~~~~Fv~~N~~IckWV~L~vv~~Q~~f~~~~~~Ls~llAmvL 68 (70)
-+....|=.+.++++++++....-++++++.++|. +++++|+.|
T Consensus 174 ~~~~~~gC~~~l~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~a~~l 217 (221)
T PF00335_consen 174 NSIYTRGCYDKLREYLRSYLKYIGIVSLAILVLQL--------IGIILACCL 217 (221)
T ss_dssp HCCTST-HHHHHHHHHCT----------------------------------
T ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 34566788899999999999999999999999999 999998875
No 3
>KOG3236 consensus Predicted membrane protein [Function unknown]
Probab=63.60 E-value=7.2 Score=29.74 Aligned_cols=35 Identities=23% Similarity=0.506 Sum_probs=30.9
Q ss_pred CCCCCCCChHHHHHHHhhhhhhHhhhhhhhhhhhc
Q 035193 17 IPADRTGDFNMIYDFLRENWNIVKWVALGVVILQN 51 (70)
Q Consensus 17 iP~DpTG~f~~~~~Fv~~N~~IckWV~L~vv~~Q~ 51 (70)
+|.+.+|.||.+.+|+|.-.||..=+|+-.+..|.
T Consensus 57 f~~~~s~~f~~~~e~LK~s~di~dl~Gl~li~s~~ 91 (225)
T KOG3236|consen 57 FPALESGGFDFVPEFLKCSADIADLIGLHLIMSRF 91 (225)
T ss_pred hhcccccccchHHHHHHhhhhHHHHhhHHHHHhcC
Confidence 68888999999999999999999999997666654
No 4
>COG4499 Predicted membrane protein [Function unknown]
Probab=63.46 E-value=8.7 Score=31.69 Aligned_cols=27 Identities=26% Similarity=0.661 Sum_probs=21.2
Q ss_pred hHHHHHHHhh-------------------hhhhHhhhhhhhhhhhc
Q 035193 25 FNMIYDFLRE-------------------NWNIVKWVALGVVILQN 51 (70)
Q Consensus 25 f~~~~~Fv~~-------------------N~~IckWV~L~vv~~Q~ 51 (70)
.+.+.+||++ -|.|.||+|+|..++=+
T Consensus 187 ld~l~e~i~e~~~kE~e~~~kn~a~VpK~k~~ifk~~giGliillv 232 (434)
T COG4499 187 LDDLAEFIDEEYQKETEKINKNYAFVPKKKYTIFKYFGIGLIILLV 232 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeecccccceehhhHHHhHHHHHH
Confidence 4567777777 47899999998887666
No 5
>COG1478 GTP and metal dependent enzyme involved F420 coenzyme biosynthesis (catalyzes addition of two l-glutamates to F420 precursor) [Coenzyme transport and metabolism]
Probab=56.54 E-value=2.6 Score=32.56 Aligned_cols=43 Identities=35% Similarity=0.565 Sum_probs=33.7
Q ss_pred cCCCCCCCChHHHHHHHhhhhhhHhhhhhhhhhh--hcc-cccccchhHH
Q 035193 16 EIPADRTGDFNMIYDFLRENWNIVKWVALGVVIL--QNR-FRMGRVDLTF 62 (70)
Q Consensus 16 diP~DpTG~f~~~~~Fv~~N~~IckWV~L~vv~~--Q~~-f~~~~~~Ls~ 62 (70)
-+|+||.++=+.|.+.+++-.- || ++|+|. |.| ||-|-+|+++
T Consensus 122 llP~dPd~Sa~~i~~~L~~~~g-~~---vgVIItDt~grp~R~G~~gvAi 167 (257)
T COG1478 122 LLPKDPDASAETIRERLRELLG-VK---VGVIITDTHGRPFRRGQTGVAI 167 (257)
T ss_pred eCCCChHHHHHHHHHHHHHHhC-Cc---eEEEEeCCCCCccccCcceEEE
Confidence 3899999999999999999887 66 455554 555 8888876554
No 6
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=49.17 E-value=16 Score=21.40 Aligned_cols=29 Identities=10% Similarity=0.392 Sum_probs=21.4
Q ss_pred ccccccCCC---------CCCCChHHHHHHHhhhhhhH
Q 035193 11 INFKHEIPA---------DRTGDFNMIYDFLRENWNIV 39 (70)
Q Consensus 11 ~~We~diP~---------DpTG~f~~~~~Fv~~N~~Ic 39 (70)
.+|...+|. -.+|=++.+.+|+++|.-|+
T Consensus 48 ~Dw~~~vP~SCC~~~~~~~~~GC~~~~~~~~~~~~~ii 85 (86)
T cd03164 48 TDWGSGVPSSCCSSDTEYKVEGCYKKLKNWFESNFLYT 85 (86)
T ss_pred hhhCCCCChhhcCCCCccccccHHHHHHHHHHHHHHHh
Confidence 456655662 25689999999999998753
No 7
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=49.12 E-value=9.1 Score=25.48 Aligned_cols=31 Identities=10% Similarity=0.215 Sum_probs=23.1
Q ss_pred ccccccCCCCCCCChHHHHHHHhhhhhhHhh
Q 035193 11 INFKHEIPADRTGDFNMIYDFLRENWNIVKW 41 (70)
Q Consensus 11 ~~We~diP~DpTG~f~~~~~Fv~~N~~IckW 41 (70)
...++.-|.+-.-.|+.+++||.+..|+.|=
T Consensus 5 ~~~~~~~p~~y~~~y~~l~~wv~~sld~yK~ 35 (142)
T PF04494_consen 5 RSIEENDPDKYEQAYSRLRNWVDNSLDIYKP 35 (142)
T ss_dssp GGSS---GCCHHHHHHHHHHHHHTS-HHHHH
T ss_pred hccccCCHHHHHHHHHHHHHHHHhCcHhhHH
Confidence 3456677888888999999999999999985
No 8
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=48.92 E-value=13 Score=24.71 Aligned_cols=18 Identities=28% Similarity=0.853 Sum_probs=16.5
Q ss_pred CCCChHHHHHHHhhhhhh
Q 035193 21 RTGDFNMIYDFLRENWNI 38 (70)
Q Consensus 21 pTG~f~~~~~Fv~~N~~I 38 (70)
+.|+.+.++++|+++|.|
T Consensus 14 r~g~~~~i~~~i~~~WgI 31 (126)
T PF12921_consen 14 RSGQLDSIKSYIKSVWGI 31 (126)
T ss_pred hcCCHHHHHHHHHHhcCC
Confidence 689999999999999986
No 9
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=47.76 E-value=13 Score=23.20 Aligned_cols=22 Identities=18% Similarity=0.554 Sum_probs=20.2
Q ss_pred CCCChHHHHHHHhhhhhhHhhh
Q 035193 21 RTGDFNMIYDFLRENWNIVKWV 42 (70)
Q Consensus 21 pTG~f~~~~~Fv~~N~~IckWV 42 (70)
.||+.+.+++.+++.+.-|-|-
T Consensus 12 ~sGe~~~L~~~L~~rL~e~GW~ 33 (86)
T PF10163_consen 12 ESGEYERLKELLRQRLIECGWR 33 (86)
T ss_dssp HCTHHHHHHHHHHHHHHHTTHH
T ss_pred HcCcHHHHHHHHHHHHHHCChH
Confidence 3799999999999999999995
No 10
>PF14995 TMEM107: Transmembrane protein
Probab=47.45 E-value=25 Score=23.76 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=32.8
Q ss_pred cCCCCCCCChHHHHHHHhhhhhhHhhhhhhhhhhhcccccccchhHHHHHhhh
Q 035193 16 EIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVV 68 (70)
Q Consensus 16 diP~DpTG~f~~~~~Fv~~N~~IckWV~L~vv~~Q~~f~~~~~~Ls~llAmvL 68 (70)
-+|.|.|-+ =|+.-+..+++|-|++++-++++. .+++.+.-+
T Consensus 30 ~lp~~~~~~---~y~~~~~~l~v~L~~s~~~l~ie~--------~g~~sG~sm 71 (124)
T PF14995_consen 30 CLPLDYTQA---EYSTADTSLVVALSVSLLCLAIEF--------WGFFSGVSM 71 (124)
T ss_pred hCCCCCcHH---HHHHhhhheehHHHHHHHHHHHHH--------HHHHHhhcc
Confidence 477766644 478888899999999999999999 777665543
No 11
>PF06385 Baculo_LEF-11: Baculovirus LEF-11 protein; InterPro: IPR009429 This family consists of several Baculovirus LEF-11 proteins. The exact function of this family is unknown although it has been shown that LEF-11 is required for viral DNA replication during the infection cycle [] and plays a role in late/very late gene activation.; GO: 0006355 regulation of transcription, DNA-dependent, 0019058 viral infectious cycle
Probab=47.32 E-value=14 Score=24.59 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=13.8
Q ss_pred CChHHHHHHHhhhhh
Q 035193 23 GDFNMIYDFLRENWN 37 (70)
Q Consensus 23 G~f~~~~~Fv~~N~~ 37 (70)
..|+.+.+||++|++
T Consensus 34 ~~F~~~~~yIr~nl~ 48 (94)
T PF06385_consen 34 PGFEEIKDYIRENLD 48 (94)
T ss_pred cchHHHHHHHHHhhc
Confidence 679999999999987
No 12
>PF08888 HopJ: HopJ type III effector protein; InterPro: IPR014984 Pathovars of Pseudomonas syringae interact with their plant hosts via the action of Hrp outer protein (Hop) effector proteins, injected into plant cells by the type III secretion system. The proteins are called HopJ after the original member HopPmaJ []. ; PDB: 2QM2_B 2QHQ_B.
Probab=45.90 E-value=14 Score=25.36 Aligned_cols=29 Identities=17% Similarity=0.580 Sum_probs=20.7
Q ss_pred hcccccccCCCCCCCChHH-HHHHHhhhhh
Q 035193 9 FQINFKHEIPADRTGDFNM-IYDFLRENWN 37 (70)
Q Consensus 9 fd~~We~diP~DpTG~f~~-~~~Fv~~N~~ 37 (70)
|-.++++|.=.+|.|+=|+ |++|++.-|+
T Consensus 73 FG~~Yr~dVL~~P~G~dHqNIRnFm~~GW~ 102 (111)
T PF08888_consen 73 FGEYYRDDVLNNPEGTDHQNIRNFMKTGWD 102 (111)
T ss_dssp TTHHHHTTTTT-TT----HHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHhCCC
Confidence 5567788999999999887 9999999887
No 13
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=44.91 E-value=8.7 Score=25.23 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=18.7
Q ss_pred CCCCCCChHHHHHHHhhhhhhHh
Q 035193 18 PADRTGDFNMIYDFLRENWNIVK 40 (70)
Q Consensus 18 P~DpTG~f~~~~~Fv~~N~~Ick 40 (70)
|.+-...|..+++||+++.|+-|
T Consensus 1 ~~~y~~~y~~l~~wv~~~ld~~k 23 (133)
T cd08044 1 PNDYEQAYSKLRKWIESSLDIYK 23 (133)
T ss_pred ChHHHHHHHHHHHHHHhCcHhhH
Confidence 44556679999999999999876
No 14
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=44.19 E-value=22 Score=19.98 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=15.8
Q ss_pred cCCCCCCCChHHHHHHHhhhhh
Q 035193 16 EIPADRTGDFNMIYDFLRENWN 37 (70)
Q Consensus 16 diP~DpTG~f~~~~~Fv~~N~~ 37 (70)
++|++.+ +++.|.+++++|-.
T Consensus 10 ~FPK~~~-~~~eI~~Yle~~~~ 30 (46)
T PF06855_consen 10 SFPKQET-DFDEISSYLESNYD 30 (46)
T ss_dssp TS-TT-S-SHHHHHHHHHCHCC
T ss_pred CCCCCCC-CHHHHHHHHHHhcC
Confidence 4898876 58999999998864
No 15
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=43.48 E-value=22 Score=23.27 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=20.7
Q ss_pred hccccccc-CCCCCCCChHHHHHHHhhhhh
Q 035193 9 FQINFKHE-IPADRTGDFNMIYDFLRENWN 37 (70)
Q Consensus 9 fd~~We~d-iP~DpTG~f~~~~~Fv~~N~~ 37 (70)
||..|+.- ++...+|+|+++|..|++=..
T Consensus 7 fdaEfRRFsl~r~~~~~f~ef~~ll~~lH~ 36 (80)
T cd06403 7 FDAEFRRFSLDRNKPGKFEDFYKLLEHLHH 36 (80)
T ss_pred cCCeEEEEEeccccCcCHHHHHHHHHHHhC
Confidence 56666643 555567999999999986443
No 16
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=41.38 E-value=23 Score=24.35 Aligned_cols=30 Identities=17% Similarity=0.568 Sum_probs=18.3
Q ss_pred HHHHHh-hhhhhHhhhhhhhhhhhcccccccchhHHHHHhh
Q 035193 28 IYDFLR-ENWNIVKWVALGVVILQNRFRMGRVDLTFRFALV 67 (70)
Q Consensus 28 ~~~Fv~-~N~~IckWV~L~vv~~Q~~f~~~~~~Ls~llAmv 67 (70)
++.=|+ ..||+.||+ +|+++.++ ++.||++
T Consensus 143 lr~~iE~~K~~~lr~~-~g~i~~~~---------a~~la~~ 173 (177)
T PF07798_consen 143 LRTEIESLKWDTLRWL-VGVIFGCV---------ALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHH
Confidence 333343 368999996 46666544 6666654
No 17
>PF15050 SCIMP: SCIMP protein
Probab=40.96 E-value=21 Score=25.34 Aligned_cols=31 Identities=29% Similarity=0.545 Sum_probs=16.8
Q ss_pred HHHhhhhhhHhhhhhhhhhhhcccccccchhHHHHHhhhc
Q 035193 30 DFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVVE 69 (70)
Q Consensus 30 ~Fv~~N~~IckWV~L~vv~~Q~~f~~~~~~Ls~llAmvLR 69 (70)
+|-|+|| |+-|+|-|+-+ |++|+++|--+.|
T Consensus 2 ~WWr~nF----WiiLAVaII~v-----S~~lglIlyCvcR 32 (133)
T PF15050_consen 2 SWWRDNF----WIILAVAIILV-----SVVLGLILYCVCR 32 (133)
T ss_pred chHHhch----HHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 3557777 55554444433 3446776655544
No 18
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=37.09 E-value=30 Score=23.22 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=12.3
Q ss_pred hhhHhhhhhhhhhhhc
Q 035193 36 WNIVKWVALGVVILQN 51 (70)
Q Consensus 36 ~~IckWV~L~vv~~Q~ 51 (70)
+=|+-||+|++.++=.
T Consensus 38 IVI~FWv~LA~FV~~l 53 (90)
T PF15183_consen 38 IVIAFWVSLAAFVVFL 53 (90)
T ss_pred eehhHHHHHHHHHHHH
Confidence 5589999998776544
No 19
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=36.14 E-value=27 Score=28.20 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=17.2
Q ss_pred ccCCCCCCCChHHHHHHHhh
Q 035193 15 HEIPADRTGDFNMIYDFLRE 34 (70)
Q Consensus 15 ~diP~DpTG~f~~~~~Fv~~ 34 (70)
+|||+--.|+ ++||.|+++
T Consensus 156 DdIPY~s~gs-dDiY~~vK~ 174 (348)
T KOG2804|consen 156 DDIPYVSAGS-DDIYKPVKE 174 (348)
T ss_pred cCccccCCCc-hhHHHHHHH
Confidence 5899998888 999999986
No 20
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=36.11 E-value=25 Score=28.08 Aligned_cols=13 Identities=69% Similarity=1.183 Sum_probs=12.3
Q ss_pred Hhhhhhhhhhhhc
Q 035193 39 VKWVALGVVILQN 51 (70)
Q Consensus 39 ckWV~L~vv~~Q~ 51 (70)
.|||.+++|++|.
T Consensus 43 ~kwvv~~~Vi~Q~ 55 (324)
T KOG2987|consen 43 LKWVVLGMVILQI 55 (324)
T ss_pred hHHHHHHHHHHHH
Confidence 6899999999998
No 21
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=35.52 E-value=23 Score=27.48 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=28.8
Q ss_pred ccccccCCCCCCCChHHHHH---HHhhhhhhHhhhhhh
Q 035193 11 INFKHEIPADRTGDFNMIYD---FLRENWNIVKWVALG 45 (70)
Q Consensus 11 ~~We~diP~DpTG~f~~~~~---Fv~~N~~IckWV~L~ 45 (70)
.-|.+.+|.+++++++++.+ |.++|-+.++.||-.
T Consensus 256 ~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~ 293 (395)
T PF05686_consen 256 KPWVHYVPVKRDDDLSDLEEKVEWLNAHDDEAQRIAEN 293 (395)
T ss_pred cccccEEEeccccchhhHHHHhhhcccChHHHHHHHHH
Confidence 35889999999877877665 889999999998864
No 22
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.30 E-value=25 Score=22.76 Aligned_cols=19 Identities=32% Similarity=1.218 Sum_probs=13.5
Q ss_pred HHHHHhhhhhhHhhhhhhhh
Q 035193 28 IYDFLRENWNIVKWVALGVV 47 (70)
Q Consensus 28 ~~~Fv~~N~~IckWV~L~vv 47 (70)
|.+||++||.| =|.+++++
T Consensus 1 ~~~~~~~~w~i-i~a~~~~~ 19 (106)
T PF10805_consen 1 MWEFIKKNWGI-IWAVFGIA 19 (106)
T ss_pred ChHHHHhCcHH-HHHHHHHH
Confidence 46899999997 55555433
No 23
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=33.75 E-value=30 Score=20.70 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=14.4
Q ss_pred CChHHHHHHHhhhhhh
Q 035193 23 GDFNMIYDFLRENWNI 38 (70)
Q Consensus 23 G~f~~~~~Fv~~N~~I 38 (70)
|.++++.++++++.+|
T Consensus 69 gG~~dl~~~~~~~~~~ 84 (86)
T TIGR02183 69 GGCTDFEQLVKENFDI 84 (86)
T ss_pred cCHHHHHHHHHhcccc
Confidence 8899999999999886
No 24
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=33.34 E-value=56 Score=23.83 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=16.8
Q ss_pred CCCCChHHHHHHHhhhhhhHhhhhhhhhh
Q 035193 20 DRTGDFNMIYDFLRENWNIVKWVALGVVI 48 (70)
Q Consensus 20 DpTG~f~~~~~Fv~~N~~IckWV~L~vv~ 48 (70)
++.|-+..++.+++.+. +| +|++++
T Consensus 6 ~~~~~~~~~~~~~~k~~---~~-~l~~ll 30 (200)
T PRK10617 6 RKPGLIKRLWKWWRTPS---RL-ALGTLL 30 (200)
T ss_pred CChHHHHHHHHHHHhhH---HH-HHHHHH
Confidence 56676788999987776 44 444443
No 25
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=33.15 E-value=17 Score=29.28 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=16.8
Q ss_pred cccccccCCCCCCCChHHHH
Q 035193 10 QINFKHEIPADRTGDFNMIY 29 (70)
Q Consensus 10 d~~We~diP~DpTG~f~~~~ 29 (70)
..||+++.|.|+||....++
T Consensus 169 eghwskEcP~~~~~rvad~t 188 (346)
T KOG0109|consen 169 EGHWSKECPVDRTGRVADLT 188 (346)
T ss_pred cccccccCCccCCCcccccc
Confidence 46999999999999876654
No 26
>smart00526 H15 Domain in histone families 1 and 5.
Probab=32.81 E-value=43 Score=19.32 Aligned_cols=20 Identities=20% Similarity=0.645 Sum_probs=15.7
Q ss_pred CCCCCC-hHHHHHHHhhhhhh
Q 035193 19 ADRTGD-FNMIYDFLRENWNI 38 (70)
Q Consensus 19 ~DpTG~-f~~~~~Fv~~N~~I 38 (70)
.||.|. ...|+.||++|.++
T Consensus 19 ~er~GsS~~aI~kyi~~~~~~ 39 (66)
T smart00526 19 KERKGSSLQAIKKYIEANYKV 39 (66)
T ss_pred CCCCCCCHHHHHHHHHHhCCC
Confidence 457775 77799999999763
No 27
>COG4844 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.01 E-value=27 Score=22.88 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=10.5
Q ss_pred hHHHHHHHhhhh
Q 035193 25 FNMIYDFLRENW 36 (70)
Q Consensus 25 f~~~~~Fv~~N~ 36 (70)
..+||.||+||+
T Consensus 65 v~NIY~~i~Enp 76 (78)
T COG4844 65 VENIYTFIEENP 76 (78)
T ss_pred HHHHHHHHhccC
Confidence 567999999997
No 28
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=31.39 E-value=46 Score=24.41 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=29.0
Q ss_pred ccccccCCCCCCCC---hHHHHHHHhhhhhhHhhhhh
Q 035193 11 INFKHEIPADRTGD---FNMIYDFLRENWNIVKWVAL 44 (70)
Q Consensus 11 ~~We~diP~DpTG~---f~~~~~Fv~~N~~IckWV~L 44 (70)
+-|.+.+|.+++.+ +.+..+|+++|=+.|+-||-
T Consensus 187 ~P~~HYvPv~~d~sd~~l~~~i~~~~~~~~~a~~Ia~ 223 (256)
T smart00672 187 QPWVHYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGK 223 (256)
T ss_pred cCccceEEeeCCCchhhHHHHHHHHHhCHHHHHHHHH
Confidence 35888999988753 88899999999999999876
No 29
>PF14278 TetR_C_8: Transcriptional regulator C-terminal region
Probab=29.76 E-value=51 Score=17.96 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=12.7
Q ss_pred hHHHHHHHhhhhhhHh
Q 035193 25 FNMIYDFLRENWNIVK 40 (70)
Q Consensus 25 f~~~~~Fv~~N~~Ick 40 (70)
+.++-+++.+|-+.++
T Consensus 4 ~~~i~~~i~~n~~~~~ 19 (77)
T PF14278_consen 4 LTEIFEYIYENRDFYK 19 (77)
T ss_pred HHHHHHHHHHhHHHHH
Confidence 4567888899988876
No 30
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.54 E-value=40 Score=25.32 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=19.5
Q ss_pred CChHHHHHHHhhhhhhHhhhhhhhhhh
Q 035193 23 GDFNMIYDFLRENWNIVKWVALGVVIL 49 (70)
Q Consensus 23 G~f~~~~~Fv~~N~~IckWV~L~vv~~ 49 (70)
-+.+.|++|.++|- ||+..++++.
T Consensus 9 qql~~ik~wwkeNG---k~li~gviLg 32 (207)
T COG2976 9 QQLEAIKDWWKENG---KALIVGVILG 32 (207)
T ss_pred HHHHHHHHHHHHCC---chhHHHHHHH
Confidence 46789999999997 7888877663
No 31
>KOG3787 consensus Glutamate/aspartate and neutral amino acid transporters [Amino acid transport and metabolism]
Probab=28.47 E-value=62 Score=27.34 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=26.3
Q ss_pred CCCCChHHHHHHHhhhhhhHhhhhhhhhhhhcccccccchhHHHHHhhhc
Q 035193 20 DRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVVE 69 (70)
Q Consensus 20 DpTG~f~~~~~Fv~~N~~IckWV~L~vv~~Q~~f~~~~~~Ls~llAmvLR 69 (70)
++.++-++.++|+|+|+=. +.-|+.-+ ++..+++.||
T Consensus 1 ~~~~~~~~~~~~l~~N~Ll-----llTv~~Vv--------~G~~lGf~LR 37 (507)
T KOG3787|consen 1 KPRGRGERVRSFLRENLLL-----LLTVSGVV--------LGVLLGFLLR 37 (507)
T ss_pred CCcccHHHHHHHHhhchhH-----HHHHHHHH--------HHHhhhheec
Confidence 4677888999999999752 33344444 7777777777
No 32
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=28.28 E-value=26 Score=26.08 Aligned_cols=12 Identities=33% Similarity=0.999 Sum_probs=10.3
Q ss_pred hhhhhhHhhhhh
Q 035193 33 RENWNIVKWVAL 44 (70)
Q Consensus 33 ~~N~~IckWV~L 44 (70)
++|.||+||+|=
T Consensus 86 ~qkydiV~WI~q 97 (192)
T PF03158_consen 86 EQKYDIVKWIGQ 97 (192)
T ss_pred HccccHHHHHhh
Confidence 479999999974
No 33
>PF06926 Rep_Org_C: Putative replisome organiser protein C-terminus; InterPro: IPR009696 This entry represents the C terminus (approximately 100 residues) of a putative replisome organiser protein in Lactococcus bacteriophages [].
Probab=27.91 E-value=36 Score=23.03 Aligned_cols=21 Identities=43% Similarity=0.955 Sum_probs=16.8
Q ss_pred ccccCCCCCCCChHH-HHHHHh
Q 035193 13 FKHEIPADRTGDFNM-IYDFLR 33 (70)
Q Consensus 13 We~diP~DpTG~f~~-~~~Fv~ 33 (70)
.+..=|.|+||+|+. =++|+.
T Consensus 51 Ykn~~~dD~~~kySvNa~~FL~ 72 (95)
T PF06926_consen 51 YKNENPDDNTGKYSVNAYEFLD 72 (95)
T ss_pred HHHcCCCCCCcceeecHHHHHH
Confidence 355679999999986 788884
No 34
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.84 E-value=33 Score=22.89 Aligned_cols=19 Identities=21% Similarity=0.101 Sum_probs=15.8
Q ss_pred CCCCCChHHHHHHHhhhhh
Q 035193 19 ADRTGDFNMIYDFLRENWN 37 (70)
Q Consensus 19 ~DpTG~f~~~~~Fv~~N~~ 37 (70)
++|+-+.+++-+|+++++.
T Consensus 117 f~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 117 FPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred ECcCCCHHHHHHHHHHHhc
Confidence 5677788999999999875
No 35
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=26.17 E-value=82 Score=19.44 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=17.1
Q ss_pred HHhhhhhhHhhhhhhhhhhhc
Q 035193 31 FLRENWNIVKWVALGVVILQN 51 (70)
Q Consensus 31 Fv~~N~~IckWV~L~vv~~Q~ 51 (70)
|-++|.+-.||+|...++...
T Consensus 56 Fs~~n~~~l~~ig~~~l~~~~ 76 (136)
T PF11188_consen 56 FSPENIRRLRRIGWLLLIISI 76 (136)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 667899999999988777665
No 36
>cd00059 FH Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.
Probab=26.15 E-value=46 Score=20.70 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHhhhhhhH
Q 035193 21 RTGDFNMIYDFLRENWNIV 39 (70)
Q Consensus 21 pTG~f~~~~~Fv~~N~~Ic 39 (70)
..=.+.+||+||++|+.-.
T Consensus 20 ~~lTL~eIy~~I~~~~pyy 38 (78)
T cd00059 20 KRLTLSEIYKWISDNFPYF 38 (78)
T ss_pred CCeeHHHHHHHHHHhCCcc
Confidence 3345789999999998643
No 37
>KOG3462 consensus Predicted membrane protein [Function unknown]
Probab=24.99 E-value=47 Score=22.80 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=18.6
Q ss_pred ccCCCCCCCChHHHHHH--HhhhhhhHhhhhh
Q 035193 15 HEIPADRTGDFNMIYDF--LRENWNIVKWVAL 44 (70)
Q Consensus 15 ~diP~DpTG~f~~~~~F--v~~N~~IckWV~L 44 (70)
||.|.|-.|-+.+|.+- +-=-.++|.|+||
T Consensus 29 eD~~pdYmn~lgmIfsmcGlM~r~KwCsWlAl 60 (105)
T KOG3462|consen 29 EDPPPDYMNFLGMIFSMCGLMFRLKWCSWLAL 60 (105)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555442 2335789999998
No 38
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=24.90 E-value=31 Score=24.15 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=20.9
Q ss_pred hcccccccCCCCCCCCh--HHHHHHHhhhhh
Q 035193 9 FQINFKHEIPADRTGDF--NMIYDFLRENWN 37 (70)
Q Consensus 9 fd~~We~diP~DpTG~f--~~~~~Fv~~N~~ 37 (70)
|.++-++.+|+..+|++ ++++.|+++|-.
T Consensus 90 F~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 90 FVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp EESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 33777778888677765 569999999965
No 39
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=24.74 E-value=39 Score=21.25 Aligned_cols=14 Identities=21% Similarity=0.693 Sum_probs=12.1
Q ss_pred CCCChHHHHHHHhh
Q 035193 21 RTGDFNMIYDFLRE 34 (70)
Q Consensus 21 pTG~f~~~~~Fv~~ 34 (70)
=+|+|+++.+|+++
T Consensus 93 l~G~Y~~l~~Fl~~ 106 (144)
T PF04350_consen 93 LEGSYHQLLNFLND 106 (144)
T ss_dssp EEEEHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHH
Confidence 37999999999985
No 40
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=23.79 E-value=20 Score=27.16 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=32.9
Q ss_pred cCCCCCCCChHHHHHHHhhhhhhHhhhhhhhhhh--hcc-cccccchhHH
Q 035193 16 EIPADRTGDFNMIYDFLRENWNIVKWVALGVVIL--QNR-FRMGRVDLTF 62 (70)
Q Consensus 16 diP~DpTG~f~~~~~Fv~~N~~IckWV~L~vv~~--Q~~-f~~~~~~Ls~ 62 (70)
-+|+||..+=.+|++-|++-.. +-++|++. ..| ||+|.+++++
T Consensus 120 LLP~DPd~SA~~ir~~l~~~~g----~~v~VIItDt~gr~~R~G~t~vAI 165 (245)
T PRK13293 120 LLPENPDESAERIREGLEELTG----KKVGVIITDTNGRPFRKGQRGVAI 165 (245)
T ss_pred ecCCCHHHHHHHHHHHHHHHHC----CCEEEEEEcCCCcccccCCcceee
Confidence 4899999999999999998776 24555555 445 8888887654
No 41
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.55 E-value=52 Score=24.01 Aligned_cols=15 Identities=33% Similarity=0.815 Sum_probs=10.8
Q ss_pred hhhHhhhhhhhhhhh
Q 035193 36 WNIVKWVALGVVILQ 50 (70)
Q Consensus 36 ~~IckWV~L~vv~~Q 50 (70)
++|.|||+++++.+=
T Consensus 31 ~k~l~~~~i~~~a~i 45 (181)
T PRK06654 31 IKILQWVAIGLFAVI 45 (181)
T ss_pred HHHHHHHHHHHHHHH
Confidence 357799999776543
No 42
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=22.39 E-value=1.1e+02 Score=24.48 Aligned_cols=43 Identities=19% Similarity=0.397 Sum_probs=27.1
Q ss_pred Ccchhhhhhccc--cccc-CC------CCCCC---------ChHHHHHHHhh----h--------------hhhHhhhh
Q 035193 1 MPSYLDAFFQIN--FKHE-IP------ADRTG---------DFNMIYDFLRE----N--------------WNIVKWVA 43 (70)
Q Consensus 1 ~~~~a~iffd~~--We~d-iP------~DpTG---------~f~~~~~Fv~~----N--------------~~IckWV~ 43 (70)
+||++.++=+.+ |+++ += .+++| .-+++.+|+++ | ++|.+|.-
T Consensus 240 ~~s~~~llP~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~Y~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 318 (440)
T PLN02733 240 CPSIYELMANPDFKWEEPPELQVWRKKSDNDGNSSVVLESYGPLESIEVFEDALSNNTLNYDGEKIPLPFNFDILKWAN 318 (440)
T ss_pred cccHHHHcCCCCCCCCCCceEEEeeeccCCCCcccccccccCHHHHHHHHHHHHhcCceecccccccCcchHHHHHHHH
Confidence 478888887775 8854 21 25665 23456666663 4 88888854
No 43
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.37 E-value=41 Score=21.96 Aligned_cols=12 Identities=25% Similarity=0.850 Sum_probs=10.0
Q ss_pred hhhhhhhhhhhc
Q 035193 40 KWVALGVVILQN 51 (70)
Q Consensus 40 kWV~L~vv~~Q~ 51 (70)
|||.++++|+=+
T Consensus 1 RW~l~~iii~~i 12 (130)
T PF12273_consen 1 RWVLFAIIIVAI 12 (130)
T ss_pred CeeeHHHHHHHH
Confidence 799998888777
No 44
>PF13228 DUF4037: Domain of unknown function (DUF4037)
Probab=22.11 E-value=50 Score=21.17 Aligned_cols=19 Identities=21% Similarity=0.273 Sum_probs=14.5
Q ss_pred CCCCCCCChHHHHHHHhhh
Q 035193 17 IPADRTGDFNMIYDFLREN 35 (70)
Q Consensus 17 iP~DpTG~f~~~~~Fv~~N 35 (70)
+=.||+|+|..+++=+...
T Consensus 17 Vf~D~~G~~~~~R~~l~~Y 35 (100)
T PF13228_consen 17 VFYDPLGEFTALRERLAYY 35 (100)
T ss_pred eeECCCchHHHHHHHHHHC
Confidence 4469999999998876433
No 45
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.80 E-value=1.4e+02 Score=22.96 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=37.6
Q ss_pred hhhhhhcccccccCCCCC-CCChHHHHH-HHhhhhhhHhhhhhhhhhhhcccccccch
Q 035193 4 YLDAFFQINFKHEIPADR-TGDFNMIYD-FLRENWNIVKWVALGVVILQNRFRMGRVD 59 (70)
Q Consensus 4 ~a~iffd~~We~diP~Dp-TG~f~~~~~-Fv~~N~~IckWV~L~vv~~Q~~f~~~~~~ 59 (70)
+++.||-..|+.+=|+|- .|.= ..+. -.-+=+.|.-|++.+++..| ||+.|..+
T Consensus 121 vGFc~l~nqwqvs~p~~~~~~a~-saraaIafsffSilsW~~~A~lA~q-R~~~g~~~ 176 (233)
T KOG4016|consen 121 VGFCFLANQWQVSKPKENPLGAG-SARAAIAFSFFSILSWGGQAVLAFQ-RYRIGADD 176 (233)
T ss_pred HHHHHHHHHhhccCCCCCCcCcc-hHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCc
Confidence 567888999999987763 3332 2222 22244689999999999988 58877654
No 46
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=21.38 E-value=64 Score=19.79 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=29.1
Q ss_pred hhhhcccccccCCCCCCCChHHHHHHHhhhhhhHhhhh
Q 035193 6 DAFFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVA 43 (70)
Q Consensus 6 ~iffd~~We~diP~DpTG~f~~~~~Fv~~N~~IckWV~ 43 (70)
....-.++-+..|..+.|.++.++..+-+|--.+++..
T Consensus 33 ~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~ 70 (133)
T cd00593 33 ELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLAR 70 (133)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHH
Confidence 34444556667888899999999999999988776543
No 47
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.97 E-value=74 Score=17.08 Aligned_cols=10 Identities=40% Similarity=0.504 Sum_probs=8.0
Q ss_pred HHHHHHHhhh
Q 035193 26 NMIYDFLREN 35 (70)
Q Consensus 26 ~~~~~Fv~~N 35 (70)
++|++|++.|
T Consensus 20 eeir~FL~~~ 29 (30)
T PF08671_consen 20 EEIREFLEFN 29 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 5788998876
No 48
>PRK13294 F420-0--gamma-glutamyl ligase; Provisional
Probab=20.30 E-value=23 Score=28.33 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=32.3
Q ss_pred cCCCCCCCChHHHHHHHhhhhhhHhhhhhhhhhh--hcc-cccccchhHH
Q 035193 16 EIPADRTGDFNMIYDFLRENWNIVKWVALGVVIL--QNR-FRMGRVDLTF 62 (70)
Q Consensus 16 diP~DpTG~f~~~~~Fv~~N~~IckWV~L~vv~~--Q~~-f~~~~~~Ls~ 62 (70)
-+|.||.++=.+|++-|++-... -++|++. ..| ||.|-++.+|
T Consensus 120 llP~dp~~sa~~l~~~l~~~~g~----~v~vii~Dt~gr~~r~g~~~vai 165 (448)
T PRK13294 120 LLPVDPDASAAALRAGLRERLGV----DVAVVVTDTMGRAWRNGQTDAAI 165 (448)
T ss_pred eCCCChHHHHHHHHHHHHHHHCC----CEEEEEecCCCCccccCccceEE
Confidence 38999999999999999996652 3455554 444 8888876554
No 49
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=20.19 E-value=58 Score=22.55 Aligned_cols=14 Identities=43% Similarity=0.909 Sum_probs=11.7
Q ss_pred ChHHHHHHHhhhhh
Q 035193 24 DFNMIYDFLRENWN 37 (70)
Q Consensus 24 ~f~~~~~Fv~~N~~ 37 (70)
+|+.+++||++|=.
T Consensus 31 ~f~kV~~yLr~~p~ 44 (137)
T TIGR03826 31 EFEKVYKFLRKHEN 44 (137)
T ss_pred HHHHHHHHHHHCCC
Confidence 68999999997743
No 50
>PF08511 COQ9: COQ9; InterPro: IPR013718 COQ9 is an enzyme that is required for the biosynthesis of coenzyme Q []. It may either catalyse a reaction in the coenzyme Q biosynthetic pathway or have a regulatory role. ; PDB: 3NI7_B.
Probab=20.12 E-value=85 Score=19.78 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=16.3
Q ss_pred CCCCCChHHHHHHHhhhhhhH
Q 035193 19 ADRTGDFNMIYDFLRENWNIV 39 (70)
Q Consensus 19 ~DpTG~f~~~~~Fv~~N~~Ic 39 (70)
.|++.+|.+.++||+..++=+
T Consensus 51 ~d~S~~~~~T~~Fl~rri~~v 71 (79)
T PF08511_consen 51 QDKSPDFEDTWAFLDRRIDDV 71 (79)
T ss_dssp T--SGGGHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHhh
Confidence 578999999999999988743
Done!