Query 035193
Match_columns 70
No_of_seqs 52 out of 54
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 16:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j49_A Transcription initiatio 49.1 4 0.00014 27.0 0.2 28 13-40 2-29 (148)
2 4dhx_B Enhancer of yellow 2 tr 44.9 9.3 0.00032 24.2 1.5 22 21-42 22-43 (101)
3 3mhs_B Protein SUS1; multi-pro 44.5 9.6 0.00033 23.9 1.5 22 21-42 18-39 (96)
4 2nxp_A Transcription initiatio 43.5 6.6 0.00023 25.8 0.6 24 18-41 24-47 (156)
5 2j4b_A TAF5, transcription ini 36.7 17 0.00059 23.5 1.8 24 18-41 5-28 (138)
6 2qhq_A Unknown function protei 35.2 15 0.00052 24.7 1.4 29 9-37 84-113 (125)
7 4ezc_A UREA transporter 1; mem 34.3 36 0.0012 26.0 3.5 32 20-51 32-68 (384)
8 3ewt_E Tumor necrosis factor r 31.7 23 0.00079 17.8 1.4 11 25-35 13-23 (25)
9 2k44_A Hsapbk, K+-channel volt 31.5 8.1 0.00028 20.3 -0.4 13 2-14 1-13 (28)
10 2o6k_A UPF0346 protein MW1311; 26.3 47 0.0016 20.6 2.5 21 16-37 32-52 (81)
11 2fj6_A Hypothetical UPF0346 pr 24.6 47 0.0016 20.7 2.2 25 16-41 32-56 (82)
12 2a07_F Forkhead box protein P2 23.8 36 0.0012 21.2 1.6 16 24-39 25-40 (93)
13 2hdc_A Protein (transcription 21.8 39 0.0013 21.1 1.4 17 24-40 24-40 (97)
14 4e9f_A Methyl-CPG-binding doma 21.7 44 0.0015 22.0 1.8 29 7-37 122-150 (161)
15 3coa_C Forkhead box protein O1 21.6 39 0.0013 21.9 1.4 15 24-38 33-47 (117)
16 1kq8_A HFH-1, hepatocyte nucle 20.8 42 0.0014 21.0 1.4 17 24-40 24-40 (100)
17 1vtn_C HNF-3/FORK head DNA-rec 20.7 42 0.0014 21.1 1.4 19 21-39 20-40 (102)
18 2c6y_A Forkhead box protein K2 20.3 43 0.0015 21.4 1.4 14 24-37 38-51 (111)
19 3bpy_A FORK head domain, forkh 20.1 45 0.0015 20.2 1.4 15 24-38 27-41 (85)
No 1
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=49.06 E-value=4 Score=27.01 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=20.0
Q ss_pred ccccCCCCCCCChHHHHHHHhhhhhhHh
Q 035193 13 FKHEIPADRTGDFNMIYDFLRENWNIVK 40 (70)
Q Consensus 13 We~diP~DpTG~f~~~~~Fv~~N~~Ick 40 (70)
|-++=|..-.-.|.++++||++++|+-|
T Consensus 2 ~~~~dp~~y~~~y~~Lr~wv~~sld~yk 29 (148)
T 2j49_A 2 SHMNAPENYIRAYSMLKNWVDSSLEIYK 29 (148)
T ss_dssp -----CTTHHHHHHHHHHHHHTSCTTTH
T ss_pred CcccCHHHHHHHHHHHHHHHHhCcHhhH
Confidence 4455576677789999999999999876
No 2
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=44.88 E-value=9.3 Score=24.20 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.4
Q ss_pred CCCChHHHHHHHhhhhhhHhhh
Q 035193 21 RTGDFNMIYDFLRENWNIVKWV 42 (70)
Q Consensus 21 pTG~f~~~~~Fv~~N~~IckWV 42 (70)
.||+.+.+++.++..+.-|-|.
T Consensus 22 eSGe~erL~~lL~~rL~EcGW~ 43 (101)
T 4dhx_B 22 ETGERERLKELLRAKLIECGWK 43 (101)
T ss_dssp HTTHHHHHHHHHHHHHHHTTHH
T ss_pred HcCCHHHHHHHHHHHHHHCCcH
Confidence 4899999999999999999995
No 3
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=44.54 E-value=9.6 Score=23.89 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=20.3
Q ss_pred CCCChHHHHHHHhhhhhhHhhh
Q 035193 21 RTGDFNMIYDFLRENWNIVKWV 42 (70)
Q Consensus 21 pTG~f~~~~~Fv~~N~~IckWV 42 (70)
.||+.+.++++++..+.-|-|.
T Consensus 18 eSGe~erL~~lL~~rL~EcGW~ 39 (96)
T 3mhs_B 18 ESGNYELISNELKARLLQEGWV 39 (96)
T ss_dssp HTTHHHHHHHHHHHHHHHTTHH
T ss_pred HCCcHHHHHHHHHHHHHHCCcH
Confidence 4899999999999999999995
No 4
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=43.54 E-value=6.6 Score=25.78 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=19.0
Q ss_pred CCCCCCChHHHHHHHhhhhhhHhh
Q 035193 18 PADRTGDFNMIYDFLRENWNIVKW 41 (70)
Q Consensus 18 P~DpTG~f~~~~~Fv~~N~~IckW 41 (70)
|..-.-.|.++++||++++|+.|=
T Consensus 24 p~~y~~~y~~L~~wv~~sld~yk~ 47 (156)
T 2nxp_A 24 PTMYEEYYSGLKHFIECSLDCHRA 47 (156)
T ss_dssp TTSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHH
Confidence 444445688999999999999884
No 5
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=36.66 E-value=17 Score=23.46 Aligned_cols=24 Identities=4% Similarity=0.199 Sum_probs=17.7
Q ss_pred CCCCCCChHHHHHHHhhhhhhHhh
Q 035193 18 PADRTGDFNMIYDFLRENWNIVKW 41 (70)
Q Consensus 18 P~DpTG~f~~~~~Fv~~N~~IckW 41 (70)
|..-.-.|.++++||+++.|+-|=
T Consensus 5 ~~~y~~~y~~L~~wv~~sld~yk~ 28 (138)
T 2j4b_A 5 KDQMETSYVSLKTWIEDSLDLFKN 28 (138)
T ss_dssp --CHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHhhHH
Confidence 334445689999999999998773
No 6
>2qhq_A Unknown function protein VPA0580; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE MLY; 1.76A {Vibrio parahaemolyticus} PDB: 2qm2_A*
Probab=35.22 E-value=15 Score=24.71 Aligned_cols=29 Identities=14% Similarity=0.418 Sum_probs=25.2
Q ss_pred hcccccccCCCCCCCChHH-HHHHHhhhhh
Q 035193 9 FQINFKHEIPADRTGDFNM-IYDFLRENWN 37 (70)
Q Consensus 9 fd~~We~diP~DpTG~f~~-~~~Fv~~N~~ 37 (70)
|-.++++|.=.+|.|+=|. |++|++.-|+
T Consensus 84 FG~~Yr~dVL~~PeG~dH~NIRnFm~~Gw~ 113 (125)
T 2qhq_A 84 FGRFYREDVLLHPENNDHQNIRNFMVTGWE 113 (125)
T ss_dssp TTHHHHTTTTTCTTCCCCHHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHcCCC
Confidence 5667888999999999876 9999999887
No 7
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=34.32 E-value=36 Score=25.97 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=22.0
Q ss_pred CCCCChHHHHHHHhhhhhh---Hhhh--hhhhhhhhc
Q 035193 20 DRTGDFNMIYDFLRENWNI---VKWV--ALGVVILQN 51 (70)
Q Consensus 20 DpTG~f~~~~~Fv~~N~~I---ckWV--~L~vv~~Q~ 51 (70)
.=||+..++.+|++++..+ .+|+ |.|=|++|.
T Consensus 32 ~~~g~~~~~~~~~~~~~~~~~~i~~~LrG~gQV~f~~ 68 (384)
T 4ezc_A 32 YITGDMKEFANWLKDKPQALQFVDWVLRGISQVVFVS 68 (384)
T ss_dssp TTSTTCHHHHHHHHTSCHHHHHHHHHHHHHHGGGTCC
T ss_pred hhCCchHHHHHHHhcCCcHHHHHHHHhcCceEEEecC
Confidence 4699999999999988754 4444 334444444
No 8
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=31.67 E-value=23 Score=17.81 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=9.1
Q ss_pred hHHHHHHHhhh
Q 035193 25 FNMIYDFLREN 35 (70)
Q Consensus 25 f~~~~~Fv~~N 35 (70)
.++.++|+|.|
T Consensus 13 ~~~Vk~fvR~~ 23 (25)
T 3ewt_E 13 LSQVKGFVRKN 23 (26)
T ss_pred HHHHHHHHHHc
Confidence 56789999987
No 9
>2k44_A Hsapbk, K+-channel voltage-sensor paddle domain of calcium-activated potassium channel subunit...; membrane, micelle, solution structure; NMR {Synthetic}
Probab=31.47 E-value=8.1 Score=20.31 Aligned_cols=13 Identities=8% Similarity=0.562 Sum_probs=9.6
Q ss_pred cchhhhhhccccc
Q 035193 2 PSYLDAFFQINFK 14 (70)
Q Consensus 2 ~~~a~iffd~~We 14 (70)
|++.++.++++|-
T Consensus 1 p~fv~~yL~~~wl 13 (28)
T 2k44_A 1 PVFVSVYLNRSWL 13 (28)
T ss_dssp CCSSHHHHHHHHH
T ss_pred CceeEeeeccchH
Confidence 6777777777775
No 10
>2o6k_A UPF0346 protein MW1311; ZR218, NESG, structural genomics, PSI-2, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: a.60.15.1
Probab=26.32 E-value=47 Score=20.62 Aligned_cols=21 Identities=24% Similarity=0.627 Sum_probs=17.3
Q ss_pred cCCCCCCCChHHHHHHHhhhhh
Q 035193 16 EIPADRTGDFNMIYDFLRENWN 37 (70)
Q Consensus 16 diP~DpTG~f~~~~~Fv~~N~~ 37 (70)
.+|+..+ +|+.|.+++++|-+
T Consensus 32 ~FPK~s~-d~~eIs~Yle~n~~ 52 (81)
T 2o6k_A 32 AFPKHDD-DFNILSDYIETHGD 52 (81)
T ss_dssp TSCSSCC-CHHHHHHHHHHHCC
T ss_pred CCCCCCC-cHHHHHHHHHHcCC
Confidence 4788754 89999999999965
No 11
>2fj6_A Hypothetical UPF0346 protein YOZE; SR391, structure, autostructure, northeast structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.60.15.1
Probab=24.62 E-value=47 Score=20.66 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=19.3
Q ss_pred cCCCCCCCChHHHHHHHhhhhhhHhh
Q 035193 16 EIPADRTGDFNMIYDFLRENWNIVKW 41 (70)
Q Consensus 16 diP~DpTG~f~~~~~Fv~~N~~IckW 41 (70)
.+|+..+ +|+.|.+++++|-+-...
T Consensus 32 ~FPK~s~-d~~eIs~Yle~n~~y~~s 56 (82)
T 2fj6_A 32 SFPKTST-DYHEISSYLELNADYLHT 56 (82)
T ss_dssp TSCTTCC-CHHHHHHHHHTSHHHHTT
T ss_pred CCCCCcc-cHHHHHHHHHHcCCccch
Confidence 4788754 899999999999764443
No 12
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=23.75 E-value=36 Score=21.18 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=13.2
Q ss_pred ChHHHHHHHhhhhhhH
Q 035193 24 DFNMIYDFLRENWNIV 39 (70)
Q Consensus 24 ~f~~~~~Fv~~N~~Ic 39 (70)
.+.+||+||++|+.-.
T Consensus 25 tL~eIY~~i~~~fpyy 40 (93)
T 2a07_F 25 TLNEIYSWFTRTFAYF 40 (93)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCcc
Confidence 5789999999998643
No 13
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=21.85 E-value=39 Score=21.08 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=13.7
Q ss_pred ChHHHHHHHhhhhhhHh
Q 035193 24 DFNMIYDFLRENWNIVK 40 (70)
Q Consensus 24 ~f~~~~~Fv~~N~~Ick 40 (70)
.+.+||+||++|+--.+
T Consensus 24 tL~eIY~~i~~~fpyyr 40 (97)
T 2hdc_A 24 TLSGICEFISNRFPYYR 40 (97)
T ss_dssp CHHHHHHHHHHHCHHHH
T ss_pred CHHHHHHHHHHhchhhc
Confidence 57899999999986443
No 14
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=21.66 E-value=44 Score=22.04 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=19.5
Q ss_pred hhhcccccccCCCCCCCChHHHHHHHhhhhh
Q 035193 7 AFFQINFKHEIPADRTGDFNMIYDFLRENWN 37 (70)
Q Consensus 7 iffd~~We~diP~DpTG~f~~~~~Fv~~N~~ 37 (70)
+|.-..|+...|.| +++....+++.+|-|
T Consensus 122 ~F~~~e~~~V~p~D--~~l~r~l~wl~~~~e 150 (161)
T 4e9f_A 122 IFCVNEWKQVHPED--HKLNKYHDWLWENHE 150 (161)
T ss_dssp HHTSSCGGGCCCCS--HHHHHHHHHHHHTC-
T ss_pred HHHCCCCCCCCCCc--HHHHHHHHHHHcCcc
Confidence 35445699999998 456667777666654
No 15
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=21.62 E-value=39 Score=21.89 Aligned_cols=15 Identities=13% Similarity=0.417 Sum_probs=12.6
Q ss_pred ChHHHHHHHhhhhhh
Q 035193 24 DFNMIYDFLRENWNI 38 (70)
Q Consensus 24 ~f~~~~~Fv~~N~~I 38 (70)
.+.+||+||++|+--
T Consensus 33 TL~eIY~~I~~~fPy 47 (117)
T 3coa_C 33 TLSQIYEWMVKSVPY 47 (117)
T ss_dssp CHHHHHHHHHHHCGG
T ss_pred cHHHHHHHHHHhCcc
Confidence 478999999999753
No 16
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=20.80 E-value=42 Score=21.03 Aligned_cols=17 Identities=12% Similarity=0.372 Sum_probs=13.7
Q ss_pred ChHHHHHHHhhhhhhHh
Q 035193 24 DFNMIYDFLRENWNIVK 40 (70)
Q Consensus 24 ~f~~~~~Fv~~N~~Ick 40 (70)
.+.+||+||++|+--.+
T Consensus 24 tL~eIY~~i~~~fpyyr 40 (100)
T 1kq8_A 24 TLAEINEYLMGKFPFFR 40 (100)
T ss_dssp CHHHHHHHHHHHCTTGG
T ss_pred cHHHHHHHHHHhCcccc
Confidence 57899999999986443
No 17
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=20.66 E-value=42 Score=21.08 Aligned_cols=19 Identities=11% Similarity=0.279 Sum_probs=14.8
Q ss_pred CCC--ChHHHHHHHhhhhhhH
Q 035193 21 RTG--DFNMIYDFLRENWNIV 39 (70)
Q Consensus 21 pTG--~f~~~~~Fv~~N~~Ic 39 (70)
|++ .+.+||+||++|+.-.
T Consensus 20 p~~~LtL~eIY~~I~~~fpyy 40 (102)
T 1vtn_C 20 PGKMLTLSEIYQWIMDLFPYY 40 (102)
T ss_dssp TTSCBCHHHHHHHHHHHCGGG
T ss_pred CCCCCcHHHHHHHHHHcCCcc
Confidence 455 4889999999998643
No 18
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=20.33 E-value=43 Score=21.44 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=12.3
Q ss_pred ChHHHHHHHhhhhh
Q 035193 24 DFNMIYDFLRENWN 37 (70)
Q Consensus 24 ~f~~~~~Fv~~N~~ 37 (70)
.+.+||+||++|+-
T Consensus 38 tL~eIY~~I~~~fP 51 (111)
T 2c6y_A 38 TLNGIYTHITKNYP 51 (111)
T ss_dssp EHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHcCC
Confidence 57899999999985
No 19
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=20.07 E-value=45 Score=20.20 Aligned_cols=15 Identities=13% Similarity=0.363 Sum_probs=12.8
Q ss_pred ChHHHHHHHhhhhhh
Q 035193 24 DFNMIYDFLRENWNI 38 (70)
Q Consensus 24 ~f~~~~~Fv~~N~~I 38 (70)
.+.+||+||++|+--
T Consensus 27 tL~eIY~~i~~~fpy 41 (85)
T 3bpy_A 27 TLAQIYEWMVRTVPY 41 (85)
T ss_dssp CHHHHHHHHHHHCGG
T ss_pred cHHHHHHHHHHhCcc
Confidence 688999999999853
Done!