Query 035193
Match_columns 70
No_of_seqs 52 out of 54
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 16:23:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035193.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035193hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j49a1 d.379.1.1 (A:149-282) 61.5 0.89 6.5E-05 28.1 0.2 23 18-40 1-23 (134)
2 d2j4ba1 d.379.1.1 (A:18-148) T 48.0 4.2 0.00031 24.7 1.8 18 24-41 5-22 (131)
3 d1g7ea_ c.47.1.7 (A:) Endoplas 45.8 2.9 0.00021 23.8 0.7 28 8-35 89-116 (122)
4 d2o6ka1 a.60.15.1 (A:4-73) Unc 45.4 7.2 0.00053 22.3 2.5 21 16-37 29-49 (70)
5 d1egoa_ c.47.1.1 (A:) Glutared 42.1 5.2 0.00038 21.6 1.4 15 23-37 70-84 (85)
6 d2nxpa1 d.379.1.1 (A:195-343) 36.7 4.6 0.00033 25.0 0.6 23 18-40 17-39 (149)
7 d1wmhb_ d.15.2.2 (B:) Partitio 35.2 6.8 0.00049 23.3 1.2 27 9-35 9-36 (82)
8 d2c0ga2 c.47.1.7 (A:1024-1145) 34.0 10 0.00073 21.3 1.8 22 17-38 98-119 (122)
9 d2e74h1 f.23.27.1 (H:3-29) Pet 33.7 13 0.00093 18.0 1.9 14 37-50 2-15 (27)
10 d2djja1 c.47.1.2 (A:6-121) Pro 27.0 22 0.0016 19.0 2.4 14 24-37 99-112 (116)
11 d1xfda2 c.69.1.24 (A:592-849) 25.7 12 0.00085 22.3 1.1 14 25-38 245-258 (258)
12 d1k47a2 d.58.26.4 (A:195-329) 24.0 19 0.0014 20.8 1.9 25 22-46 51-75 (135)
13 d1zgha1 b.46.1.1 (A:165-226) M 23.9 26 0.0019 19.2 2.3 16 16-33 7-22 (62)
14 d1mo6a2 d.48.1.1 (A:270-329) R 23.7 20 0.0015 19.4 1.8 17 26-42 35-51 (60)
15 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 21.4 27 0.002 19.4 2.1 18 23-40 17-34 (75)
16 d2feaa1 c.108.1.20 (A:2-227) 2 21.3 29 0.0021 19.9 2.3 31 12-42 193-223 (226)
No 1
>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=61.46 E-value=0.89 Score=28.11 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=19.9
Q ss_pred CCCCCCChHHHHHHHhhhhhhHh
Q 035193 18 PADRTGDFNMIYDFLRENWNIVK 40 (70)
Q Consensus 18 P~DpTG~f~~~~~Fv~~N~~Ick 40 (70)
|.+-.-.|+++++||+++.|+.|
T Consensus 1 P~~Ye~~y~~Lr~wv~~sld~yK 23 (134)
T d2j49a1 1 PENYIRAYSMLKNWVDSSLEIYK 23 (134)
T ss_dssp CTTHHHHHHHHHHHHHTSCTTTH
T ss_pred ChHHHHHHHHHHHHHHhCcHhhH
Confidence 55666789999999999999988
No 2
>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}
Probab=47.98 E-value=4.2 Score=24.68 Aligned_cols=18 Identities=6% Similarity=0.318 Sum_probs=15.9
Q ss_pred ChHHHHHHHhhhhhhHhh
Q 035193 24 DFNMIYDFLRENWNIVKW 41 (70)
Q Consensus 24 ~f~~~~~Fv~~N~~IckW 41 (70)
.|.++++||+++.|+.|=
T Consensus 5 ~y~~Lr~wv~~sld~yK~ 22 (131)
T d2j4ba1 5 SYVSLKTWIEDSLDLFKN 22 (131)
T ss_dssp HHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHhCcHhhHH
Confidence 478899999999999884
No 3
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=45.81 E-value=2.9 Score=23.81 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=19.6
Q ss_pred hhcccccccCCCCCCCChHHHHHHHhhh
Q 035193 8 FFQINFKHEIPADRTGDFNMIYDFLREN 35 (70)
Q Consensus 8 ffd~~We~diP~DpTG~f~~~~~Fv~~N 35 (70)
|-+.+-++.++++..-+.+.|.+||++|
T Consensus 89 f~~G~~~~~~~y~G~rt~~~l~~fi~~~ 116 (122)
T d1g7ea_ 89 FRDGDFENPVPYSGAVKVGAIQRWLKGQ 116 (122)
T ss_dssp EESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred EecCcccCceecCCCCCHHHHHHHHHhc
Confidence 4444555556666556678999999998
No 4
>d2o6ka1 a.60.15.1 (A:4-73) Uncharacterized protein MW1311 {Staphylococcus aureus [TaxId: 1280]}
Probab=45.35 E-value=7.2 Score=22.32 Aligned_cols=21 Identities=24% Similarity=0.637 Sum_probs=18.5
Q ss_pred cCCCCCCCChHHHHHHHhhhhh
Q 035193 16 EIPADRTGDFNMIYDFLRENWN 37 (70)
Q Consensus 16 diP~DpTG~f~~~~~Fv~~N~~ 37 (70)
.+|+ .+.+|++|-++|+.|-+
T Consensus 29 ~FPK-~s~d~~eiS~YLE~n~~ 49 (70)
T d2o6ka1 29 AFPK-HDDDFNILSDYIETHGD 49 (70)
T ss_dssp TSCS-SCCCHHHHHHHHHHHCC
T ss_pred CCCC-CCCCHHHHHHHHHHccc
Confidence 4888 78999999999999965
No 5
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}
Probab=42.11 E-value=5.2 Score=21.57 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=13.8
Q ss_pred CChHHHHHHHhhhhh
Q 035193 23 GDFNMIYDFLRENWN 37 (70)
Q Consensus 23 G~f~~~~~Fv~~N~~ 37 (70)
|-|+++.+++++|+|
T Consensus 70 GG~~el~~~~~~~~d 84 (85)
T d1egoa_ 70 GGYTDFAAWVKENLD 84 (85)
T ss_dssp ESSHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHhcCC
Confidence 889999999999987
No 6
>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.75 E-value=4.6 Score=25.01 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=19.7
Q ss_pred CCCCCCChHHHHHHHhhhhhhHh
Q 035193 18 PADRTGDFNMIYDFLRENWNIVK 40 (70)
Q Consensus 18 P~DpTG~f~~~~~Fv~~N~~Ick 40 (70)
|..-.-.|..+++||+++.|+.|
T Consensus 17 p~~Ye~~y~~Lr~wv~~sld~yK 39 (149)
T d2nxpa1 17 PTMYEEYYSGLKHFIECSLDCHR 39 (149)
T ss_dssp TTSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH
Confidence 55556679999999999999988
No 7
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.20 E-value=6.8 Score=23.33 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=20.1
Q ss_pred hccccccc-CCCCCCCChHHHHHHHhhh
Q 035193 9 FQINFKHE-IPADRTGDFNMIYDFLREN 35 (70)
Q Consensus 9 fd~~We~d-iP~DpTG~f~~~~~Fv~~N 35 (70)
||..|+.= ++...+|.|++||..|++=
T Consensus 9 FdAEfRRFsl~r~~~~~fe~F~~Lle~~ 36 (82)
T d1wmhb_ 9 FDAEFRRFALPRASVSGFQEFSRLLRAV 36 (82)
T ss_dssp ETTEEEEEEEEGGGCCCHHHHHHHHHHH
T ss_pred cCceEEEeeeccccccCHHHHHHHHHHH
Confidence 44455543 7777899999999999863
No 8
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=34.04 E-value=10 Score=21.30 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHhhhhhh
Q 035193 17 IPADRTGDFNMIYDFLRENWNI 38 (70)
Q Consensus 17 iP~DpTG~f~~~~~Fv~~N~~I 38 (70)
.+++..-..+.|.+||++|-.+
T Consensus 98 ~~~~g~rt~~~l~~fv~~~~~~ 119 (122)
T d2c0ga2 98 LPSHVDVTLDNLKAFVSANTPL 119 (122)
T ss_dssp CCTTSCCCHHHHHHHHHHHSSC
T ss_pred cccCCCCCHHHHHHHHHHhcCc
Confidence 4555555789999999999763
No 9
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=33.67 E-value=13 Score=18.02 Aligned_cols=14 Identities=43% Similarity=0.700 Sum_probs=9.9
Q ss_pred hhHhhhhhhhhhhh
Q 035193 37 NIVKWVALGVVILQ 50 (70)
Q Consensus 37 ~IckWV~L~vv~~Q 50 (70)
+..-||+|.+|+.=
T Consensus 2 ~~lgwv~llvvftw 15 (27)
T d2e74h1 2 DVLGWVALLVVFTW 15 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHhhh
Confidence 45679999777643
No 10
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}
Probab=26.99 E-value=22 Score=18.98 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=11.7
Q ss_pred ChHHHHHHHhhhhh
Q 035193 24 DFNMIYDFLRENWN 37 (70)
Q Consensus 24 ~f~~~~~Fv~~N~~ 37 (70)
+.++|.+||++|.+
T Consensus 99 ~~~~l~~fi~~~~~ 112 (116)
T d2djja1 99 TVEDLIKFIAENGK 112 (116)
T ss_dssp CHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHccC
Confidence 36789999999965
No 11
>d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.67 E-value=12 Score=22.27 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=11.2
Q ss_pred hHHHHHHHhhhhhh
Q 035193 25 FNMIYDFLRENWNI 38 (70)
Q Consensus 25 f~~~~~Fv~~N~~I 38 (70)
++.+.+|+++|++|
T Consensus 245 ~~~~~~f~~~~~~~ 258 (258)
T d1xfda2 245 YRSIINFFVECFRI 258 (258)
T ss_dssp HHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHhhCC
Confidence 46688899999875
No 12
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=23.99 E-value=19 Score=20.78 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=21.2
Q ss_pred CCChHHHHHHHhhhhhhHhhhhhhh
Q 035193 22 TGDFNMIYDFLRENWNIVKWVALGV 46 (70)
Q Consensus 22 TG~f~~~~~Fv~~N~~IckWV~L~v 46 (70)
+|+++.+-+.+++||+..+=.+.++
T Consensus 51 ~~d~~~l~~~m~~~~~ll~~l~~~i 75 (135)
T d1k47a2 51 QGKSEKIIEQVEVASKLLEGLSTDI 75 (135)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred hCCHHHHHHHHHHHHHHHHhccccC
Confidence 5789999999999999998776654
No 13
>d1zgha1 b.46.1.1 (A:165-226) Methionyl-tRNAfmet formyltransferase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]}
Probab=23.91 E-value=26 Score=19.16 Aligned_cols=16 Identities=50% Similarity=0.897 Sum_probs=13.0
Q ss_pred cCCCCCCCChHHHHHHHh
Q 035193 16 EIPADRTGDFNMIYDFLR 33 (70)
Q Consensus 16 diP~DpTG~f~~~~~Fv~ 33 (70)
.||.+ .++.++|++||
T Consensus 7 ~I~~~--~~i~~iyD~IR 22 (62)
T d1zgha1 7 EISPD--FDLEKIYDYIR 22 (62)
T ss_dssp BCCTT--SCHHHHHHHHH
T ss_pred cCCcc--cCHHHHhhhee
Confidence 47765 58999999997
No 14
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.74 E-value=20 Score=19.44 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhhhHhhh
Q 035193 26 NMIYDFLRENWNIVKWV 42 (70)
Q Consensus 26 ~~~~~Fv~~N~~IckWV 42 (70)
++.+.|+++|-+++.=+
T Consensus 35 e~a~~~L~enpel~~ei 51 (60)
T d1mo6a2 35 ENARNFLVENADVADEI 51 (60)
T ss_dssp HHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHH
Confidence 56899999999988643
No 15
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.39 E-value=27 Score=19.39 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=14.6
Q ss_pred CChHHHHHHHhhhhhhHh
Q 035193 23 GDFNMIYDFLRENWNIVK 40 (70)
Q Consensus 23 G~f~~~~~Fv~~N~~Ick 40 (70)
=.+.+||+||++|+.-.|
T Consensus 17 ltL~eIy~~i~~~fpy~r 34 (75)
T d1kq8a_ 17 LTLAEINEYLMGKFPFFR 34 (75)
T ss_dssp BCHHHHHHHHHHHCTTGG
T ss_pred ccHHHHHHHHHHhCcccc
Confidence 357899999999987654
No 16
>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Probab=21.25 E-value=29 Score=19.89 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=25.8
Q ss_pred cccccCCCCCCCChHHHHHHHhhhhhhHhhh
Q 035193 12 NFKHEIPADRTGDFNMIYDFLRENWNIVKWV 42 (70)
Q Consensus 12 ~We~diP~DpTG~f~~~~~Fv~~N~~IckWV 42 (70)
-.++..|..+--+|+++.+.+++=.++-.|+
T Consensus 193 ~~~~~~~~~~~~d~~~i~~~l~~~~~~~~~~ 223 (226)
T d2feaa1 193 CREQNLNHLPYQDFYEIRKEIENVKEVQEWL 223 (226)
T ss_dssp HHHTTCCEECCSSHHHHHHHHHTSHHHHHHH
T ss_pred HHHcCCCeeecCCHHHHHHHHHHHHHHHHHh
Confidence 3466788888889999999999988888886
Done!