Query 035197
Match_columns 70
No_of_seqs 17 out of 19
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 10:00:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08997 UCR_6-4kD: Ubiquinol- 86.7 0.16 3.5E-06 31.3 -0.4 22 20-41 16-37 (56)
2 PF09796 QCR10: Ubiquinol-cyto 80.7 0.76 1.6E-05 28.6 0.8 22 22-43 14-35 (64)
3 TIGR03063 srtB_target sortase 71.8 1.1 2.4E-05 24.5 -0.2 24 17-40 2-25 (29)
4 PF01552 Pico_P2B: Picornaviru 53.6 2.8 6.2E-05 28.1 -0.9 13 40-52 76-88 (99)
5 TIGR01323 nitrile_alph nitrile 33.1 19 0.00042 26.8 0.7 25 46-70 75-101 (185)
6 COG4083 Predicted membrane pro 31.4 6.8 0.00015 30.2 -2.0 33 17-49 8-40 (239)
7 PRK09177 xanthine-guanine phos 30.0 29 0.00063 23.4 1.1 16 38-54 137-152 (156)
8 KOG0753 Mitochondrial fatty ac 26.8 39 0.00084 27.0 1.4 34 18-51 120-153 (317)
9 KOG0763 Mitochondrial ornithin 19.2 54 0.0012 26.0 0.9 22 29-50 22-43 (301)
10 TIGR03656 IsdC heme uptake pro 18.8 29 0.00063 26.0 -0.6 26 15-40 185-210 (217)
No 1
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=86.72 E-value=0.16 Score=31.31 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.3
Q ss_pred hhHHHHHHhhhhhhheeeeeee
Q 035197 20 VDVQAAAFWGVAAVSGALYLIQ 41 (70)
Q Consensus 20 tDi~aaA~WGvaa~~gAlwLVQ 41 (70)
.=+.+++.||.+++++.+|+++
T Consensus 16 ~w~ps~~~~G~~~~l~lvy~TD 37 (56)
T PF08997_consen 16 NWIPSAAAWGAAGGLALVYFTD 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhchhHHHHhhhhhhheeeecc
Confidence 3467899999999999999986
No 2
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=80.67 E-value=0.76 Score=28.61 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=17.9
Q ss_pred HHHHHHhhhhhhheeeeeeeec
Q 035197 22 VQAAAFWGVAAVSGALYLIQVF 43 (70)
Q Consensus 22 i~aaA~WGvaa~~gAlwLVQPf 43 (70)
...+|+||++++.+++..+--+
T Consensus 14 ~p~~a~wG~aa~~~v~~f~~~v 35 (64)
T PF09796_consen 14 GPNLALWGGAAGAAVLFFTSGV 35 (64)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 4578999999999999876544
No 3
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=71.83 E-value=1.1 Score=24.52 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.2
Q ss_pred CChhhHHHHHHhhhhhhheeeeee
Q 035197 17 LQPVDVQAAAFWGVAAVSGALYLI 40 (70)
Q Consensus 17 pQ~tDi~aaA~WGvaa~~gAlwLV 40 (70)
||+.|-+.+++|++..+..+++|+
T Consensus 2 PkT~D~a~i~ly~~l~~~s~~~Li 25 (29)
T TIGR03063 2 PKTGDSAQIGLYAVLFLGSGLFLI 25 (29)
T ss_pred CCCccchhHHHHHHHHHHHHHHHh
Confidence 899999999999999888777775
No 4
>PF01552 Pico_P2B: Picornavirus 2B protein; InterPro: IPR002527 Poliovirus infection leads to drastic alterations in membrane permeability late during infection. Proteins 2B and 2BC enhance membrane permeability [, ].; GO: 0000166 nucleotide binding, 0003968 RNA-directed RNA polymerase activity, 0005198 structural molecule activity, 0008233 peptidase activity, 0008234 cysteine-type peptidase activity, 0016740 transferase activity, 0016779 nucleotidyltransferase activity, 0016787 hydrolase activity, 0018144 RNA-protein covalent cross-linking, 0019012 virion
Probab=53.56 E-value=2.8 Score=28.08 Aligned_cols=13 Identities=0% Similarity=-0.174 Sum_probs=11.9
Q ss_pred eeecceeeeeecC
Q 035197 40 IQVFSFSFVHFVL 52 (70)
Q Consensus 40 VQPfDWi~~t~~~ 52 (70)
.-||+|+|+++|.
T Consensus 76 ~sPw~~LK~Kvc~ 88 (99)
T PF01552_consen 76 GSPWRWLKSKVCK 88 (99)
T ss_pred CCHHHHHHHHHHh
Confidence 8999999999885
No 5
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=33.07 E-value=19 Score=26.80 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=19.5
Q ss_pred eeeeecCccccCcc--cccCCCCCCCC
Q 035197 46 SFVHFVLPLIHDLL--YLCSSFPHPLL 70 (70)
Q Consensus 46 i~~t~~~P~~~~~l--~~~ssf~~~~~ 70 (70)
+..-.-.|..||.. .+||-||-|+|
T Consensus 75 ~~~vent~~vHN~vVCTLCSCyP~pvL 101 (185)
T TIGR01323 75 IVALENTPGVHNVVVCTLCSCYPWPVL 101 (185)
T ss_pred EEEEeCCCCceeEEEeccccccCchhc
Confidence 33445679999986 68999999986
No 6
>COG4083 Predicted membrane protein [Function unknown]
Probab=31.35 E-value=6.8 Score=30.22 Aligned_cols=33 Identities=24% Similarity=0.168 Sum_probs=26.7
Q ss_pred CChhhHHHHHHhhhhhhheeeeeeeecceeeee
Q 035197 17 LQPVDVQAAAFWGVAAVSGALYLIQVFSFSFVH 49 (70)
Q Consensus 17 pQ~tDi~aaA~WGvaa~~gAlwLVQPfDWi~~t 49 (70)
|-..|+..-|+-|+-|+-++.|..|++|+++.|
T Consensus 8 p~li~v~~~ag~~gWavFs~~wg~~i~hyl~vq 40 (239)
T COG4083 8 PALIDVARYAGVGGWAVFSLFWGLLIEHYLFVQ 40 (239)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhhhHHHHHHH
Confidence 445677777777777788899999999999865
No 7
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=29.99 E-value=29 Score=23.44 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=12.5
Q ss_pred eeeeecceeeeeecCcc
Q 035197 38 YLIQVFSFSFVHFVLPL 54 (70)
Q Consensus 38 wLVQPfDWi~~t~~~P~ 54 (70)
|+++||+ .+.+++.|.
T Consensus 137 Wi~fpwe-~~~~~~~~~ 152 (156)
T PRK09177 137 WIEFPWD-MGLTFVPPL 152 (156)
T ss_pred eEEeCCC-CCccccCcc
Confidence 9999999 466777763
No 8
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion]
Probab=26.75 E-value=39 Score=27.03 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=28.0
Q ss_pred ChhhHHHHHHhhhhhhheeeeeeeecceeeeeec
Q 035197 18 QPVDVQAAAFWGVAAVSGALYLIQVFSFSFVHFV 51 (70)
Q Consensus 18 Q~tDi~aaA~WGvaa~~gAlwLVQPfDWi~~t~~ 51 (70)
+..-+-...+=|+++++.|.++-||.|-+|+++-
T Consensus 120 ~~~~l~~~~l~G~taGaia~~~AnPtDlVKVrmQ 153 (317)
T KOG0753|consen 120 ESLPLWKSILCGVTAGAIAQALANPTDLVKVRMQ 153 (317)
T ss_pred ccccHHHHHHHHHhhhHHHHHhcCccceEEEEee
Confidence 3344666777799999999999999999999873
No 9
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion]
Probab=19.18 E-value=54 Score=26.02 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.0
Q ss_pred hhhhhheeeeeeeecceeeeee
Q 035197 29 GVAAVSGALYLIQVFSFSFVHF 50 (70)
Q Consensus 29 Gvaa~~gAlwLVQPfDWi~~t~ 50 (70)
|.+++++-.|.-||+|=+|++.
T Consensus 22 GaaGG~A~Vy~gQPlDTvKVK~ 43 (301)
T KOG0763|consen 22 GAAGGTACVYTGQPLDTVKVKM 43 (301)
T ss_pred cccCCceeeeeCCCcceeeeeh
Confidence 5677888899999999999875
No 10
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=18.82 E-value=29 Score=26.04 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=22.7
Q ss_pred cCCChhhHHHHHHhhhhhhheeeeee
Q 035197 15 SRLQPVDVQAAAFWGVAAVSGALYLI 40 (70)
Q Consensus 15 ~rpQ~tDi~aaA~WGvaa~~gAlwLV 40 (70)
--||..|=+.+.+|++..+..+.+|+
T Consensus 185 ~np~t~d~~~~~l~~~~~~~~~~~l~ 210 (217)
T TIGR03656 185 DNPQTGDGTPIYLYAIALLIAGALLI 210 (217)
T ss_pred CCCCcCccchhHHHHHHHHHHHHHHH
Confidence 35999999999999999998888776
Done!