Query 035197
Match_columns 70
No_of_seqs 17 out of 19
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 16:26:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fyu_K Ubiquinol-cytochrome C 92.7 0.017 5.8E-07 34.4 -0.4 20 22-41 18-37 (56)
2 1wih_A Mitochondrial ribosome 39.0 9 0.00031 23.8 0.7 10 37-46 35-44 (84)
3 1n1i_A Merozoite surface prote 28.6 15 0.00051 24.0 0.5 8 61-68 94-101 (105)
4 1wiv_A UBP14, ubiquitin-specif 18.1 45 0.0015 19.5 1.1 22 41-62 3-24 (73)
5 1ugp_A NitrIle hydratase alpha 15.7 17 0.00056 26.5 -1.5 26 45-70 91-118 (203)
6 1oi0_A AF2198, hypothetical pr 15.7 93 0.0032 18.7 2.1 23 15-43 77-99 (124)
7 2crn_A Ubash3A protein; compac 12.7 41 0.0014 19.3 -0.1 22 43-64 42-63 (64)
8 2zzd_C Thiocyanate hydrolase s 11.0 28 0.00094 25.9 -1.5 26 45-70 112-139 (243)
9 4gua_A Non-structural polyprot 10.3 79 0.0027 26.5 0.8 8 61-68 629-636 (670)
10 1f6v_A DNA transposition prote 9.8 1.1E+02 0.0039 19.3 1.2 15 16-30 12-27 (91)
No 1
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=92.65 E-value=0.017 Score=34.39 Aligned_cols=20 Identities=25% Similarity=0.672 Sum_probs=18.6
Q ss_pred HHHHHHhhhhhhheeeeeee
Q 035197 22 VQAAAFWGVAAVSGALYLIQ 41 (70)
Q Consensus 22 i~aaA~WGvaa~~gAlwLVQ 41 (70)
+-+++.||.+++++++|+++
T Consensus 18 ~psa~~~Gaaa~v~~ly~td 37 (56)
T 2fyu_K 18 VPTASLWGAVGAVGLVWATD 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhheeeecc
Confidence 56799999999999999998
No 2
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=39.01 E-value=9 Score=23.75 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=8.0
Q ss_pred eeeeeeccee
Q 035197 37 LYLIQVFSFS 46 (70)
Q Consensus 37 lwLVQPfDWi 46 (70)
.-+||||||=
T Consensus 35 ~l~I~p~D~~ 44 (84)
T 1wih_A 35 VILVNMASFP 44 (84)
T ss_dssp EEEEECTTCT
T ss_pred EEEEEecccH
Confidence 5689999983
No 3
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Probab=28.65 E-value=15 Score=24.03 Aligned_cols=8 Identities=50% Similarity=0.405 Sum_probs=4.2
Q ss_pred ccCCCCCC
Q 035197 61 LCSSFPHP 68 (70)
Q Consensus 61 ~~ssf~~~ 68 (70)
.+|||||-
T Consensus 94 ~~ssf~~~ 101 (105)
T 1n1i_A 94 SSSSGPHH 101 (105)
T ss_dssp CCCCC---
T ss_pred CCCCCCcc
Confidence 57899983
No 4
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=18.10 E-value=45 Score=19.50 Aligned_cols=22 Identities=18% Similarity=-0.108 Sum_probs=18.5
Q ss_pred eecceeeeeecCccccCccccc
Q 035197 41 QVFSFSFVHFVLPLIHDLLYLC 62 (70)
Q Consensus 41 QPfDWi~~t~~~P~~~~~l~~~ 62 (70)
+...||.++-=+|.+.+||.+.
T Consensus 3 ~am~wl~~h~dDpd~d~pl~~~ 24 (73)
T 1wiv_A 3 SGSSGLLSHMDDPDIDAPISHQ 24 (73)
T ss_dssp CCCCCCSSCCSCSCSSCCSCCS
T ss_pred HHHHHHHHcCCCCCccCCCCCC
Confidence 3468999999999999998763
No 5
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=15.72 E-value=17 Score=26.45 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=19.2
Q ss_pred eeeeeecCccccCcc--cccCCCCCCCC
Q 035197 45 FSFVHFVLPLIHDLL--YLCSSFPHPLL 70 (70)
Q Consensus 45 Wi~~t~~~P~~~~~l--~~~ssf~~~~~ 70 (70)
.+..---.|..||.. .+||-||-|+|
T Consensus 91 ~l~vvENTp~vHNvvVCTLCSCYPwpvL 118 (203)
T 1ugp_A 91 DMMWVENTDEVHHVVVCTLASCYPWPVL 118 (203)
T ss_dssp EEEEEECCSSEEEEEECTTSCCCCHHHH
T ss_pred eEEEEecCCCceeEEEeecccCcCcccc
Confidence 444445578899986 59999998764
No 6
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=15.69 E-value=93 Score=18.72 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=16.2
Q ss_pred cCCChhhHHHHHHhhhhhhheeeeeeeec
Q 035197 15 SRLQPVDVQAAAFWGVAAVSGALYLIQVF 43 (70)
Q Consensus 15 ~rpQ~tDi~aaA~WGvaa~~gAlwLVQPf 43 (70)
-+|+.+|++.++- .++.|+|-=.
T Consensus 77 ~~PS~~D~~~~~~------~~~~~lIvs~ 99 (124)
T 1oi0_A 77 CRPSEEDLSLFTR------FGKYHIIVCY 99 (124)
T ss_dssp CSCCHHHHHHHHH------SCSEEEEEET
T ss_pred CccCHHHHHhhhc------CCCEEEEEEc
Confidence 4799999988653 4567776543
No 7
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=12.73 E-value=41 Score=19.28 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=17.2
Q ss_pred cceeeeeecCccccCcccccCC
Q 035197 43 FSFSFVHFVLPLIHDLLYLCSS 64 (70)
Q Consensus 43 fDWi~~t~~~P~~~~~l~~~ss 64 (70)
.+||..+.-+|.+.+|+-.-+|
T Consensus 42 ~~wL~~h~~d~d~d~p~~~~~~ 63 (64)
T 2crn_A 42 LAWLHDHCNDPSLDDPISGPSS 63 (64)
T ss_dssp HHHHHHHSSSTTSCCSCCCCSC
T ss_pred HHHHHhCCCCccccCCCCCCCC
Confidence 4788888889999999866554
No 8
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=10.96 E-value=28 Score=25.89 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=19.3
Q ss_pred eeeeeecCccccCcc--cccCCCCCCCC
Q 035197 45 FSFVHFVLPLIHDLL--YLCSSFPHPLL 70 (70)
Q Consensus 45 Wi~~t~~~P~~~~~l--~~~ssf~~~~~ 70 (70)
.+..---.|..||.. .+||-||-|+|
T Consensus 112 ~l~vvENTp~vHN~vVCTLCSCYP~pvL 139 (243)
T 2zzd_C 112 NLRVLADSPTLKHVVVCTLASAYPRPIL 139 (243)
T ss_dssp EEEEEECBTTEEEEEECTTSCCCCHHHH
T ss_pred eEEEEecCCCceeEEEEecccccCcccc
Confidence 444555678889986 69999998764
No 9
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=10.33 E-value=79 Score=26.47 Aligned_cols=8 Identities=63% Similarity=1.198 Sum_probs=5.3
Q ss_pred ccCCCCCC
Q 035197 61 LCSSFPHP 68 (70)
Q Consensus 61 ~~ssf~~~ 68 (70)
-|||||-|
T Consensus 629 VCSSf~LP 636 (670)
T 4gua_A 629 VCSSTPLP 636 (670)
T ss_dssp ECTTSCCC
T ss_pred EecCCCCc
Confidence 57777665
No 10
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=9.75 E-value=1.1e+02 Score=19.30 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=12.5
Q ss_pred CCChhhHHHHH-Hhhh
Q 035197 16 RLQPVDVQAAA-FWGV 30 (70)
Q Consensus 16 rpQ~tDi~aaA-~WGv 30 (70)
.|-..||+|.+ .|||
T Consensus 12 k~kk~DI~Aia~AW~v 27 (91)
T 1f6v_A 12 KTKKADVKAIADAWQI 27 (91)
T ss_dssp SCSGGGTTHHHHSSTT
T ss_pred CCCHHHHHHHHHHhCC
Confidence 68889999874 7988
Done!