Query 035198
Match_columns 70
No_of_seqs 90 out of 92
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 10:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05018 DUF667: Protein of un 100.0 9.9E-35 2.2E-39 205.0 5.9 69 1-69 121-189 (190)
2 KOG3213 Transcription factor I 100.0 6.7E-34 1.5E-38 209.8 5.6 69 1-69 121-189 (238)
3 PRK00153 hypothetical protein; 66.8 17 0.00036 23.2 4.4 44 12-55 15-63 (104)
4 PF02575 YbaB_DNA_bd: YbaB/Ebf 64.3 9.3 0.0002 23.2 2.8 24 31-54 31-54 (93)
5 PF09103 BRCA-2_OB1: BRCA2, ol 61.1 6.6 0.00014 26.2 1.9 17 3-19 37-53 (118)
6 PF08381 BRX: Transcription fa 47.2 11 0.00025 23.0 1.1 26 31-56 17-42 (59)
7 PF03478 DUF295: Protein of un 44.2 20 0.00042 20.1 1.8 11 36-50 30-40 (54)
8 PF12565 DUF3747: Protein of u 40.8 7.6 0.00017 28.3 -0.4 19 1-27 150-168 (181)
9 PF14619 SnAC: Snf2-ATP coupli 39.5 8 0.00017 23.6 -0.4 16 48-63 17-32 (74)
10 TIGR00251 conserved hypothetic 37.8 85 0.0018 20.0 4.1 38 16-61 50-87 (87)
11 PF11606 AlcCBM31: Family 31 c 36.0 11 0.00025 25.0 -0.1 12 4-15 28-39 (93)
12 PF08478 POTRA_1: POTRA domain 35.6 38 0.00081 18.9 2.1 33 4-36 24-56 (69)
13 PRK14626 hypothetical protein; 35.3 41 0.00089 22.2 2.5 26 31-56 41-66 (110)
14 PRK14627 hypothetical protein; 34.4 45 0.00098 21.6 2.5 26 31-56 37-62 (100)
15 cd04493 BRCA2DBD_OB1 BRCA2DBD_ 31.3 37 0.00079 22.5 1.7 20 30-50 78-97 (100)
16 PRK14622 hypothetical protein; 30.4 60 0.0013 21.1 2.6 26 31-56 37-62 (103)
17 TIGR00103 DNA_YbaB_EbfC DNA-bi 30.0 1.1E+02 0.0023 19.7 3.7 40 14-53 19-63 (102)
18 PF11549 Sec31: Protein transp 29.9 16 0.00035 22.0 -0.2 18 6-23 23-40 (51)
19 smart00135 LY Low-density lipo 29.3 25 0.00055 17.3 0.6 11 42-52 20-30 (43)
20 PF02033 RBFA: Ribosome-bindin 28.0 80 0.0017 19.6 2.8 23 27-49 27-49 (104)
21 PRK14625 hypothetical protein; 26.6 1.8E+02 0.0038 19.3 4.4 44 13-56 15-63 (109)
22 PF07430 PP1: Phloem filament 26.3 19 0.00041 26.9 -0.4 44 2-46 3-46 (202)
23 COG1652 XkdP Uncharacterized p 25.6 41 0.00089 24.2 1.3 41 16-68 221-264 (269)
24 PF01745 IPT: Isopentenyl tran 25.1 27 0.00059 26.5 0.3 40 22-61 23-75 (233)
25 KOG4699 Preprotein translocase 25.0 27 0.00058 25.6 0.2 11 4-14 127-137 (180)
26 COG5538 SEC66 Endoplasmic reti 25.0 27 0.00058 25.6 0.2 11 4-14 127-137 (180)
27 PF12774 AAA_6: Hydrolytic ATP 24.3 60 0.0013 23.5 1.9 38 30-68 125-163 (231)
28 PF10714 LEA_6: Late embryogen 24.0 41 0.0009 21.8 0.9 13 15-27 25-37 (79)
29 PF08031 BBE: Berberine and be 23.2 51 0.0011 18.2 1.1 21 10-30 4-26 (47)
30 PF14332 DUF4388: Domain of un 23.2 1.8E+02 0.0038 17.3 4.2 36 13-50 6-41 (103)
31 PF00739 X: Trans-activation p 22.7 28 0.00061 24.7 0.0 21 44-64 109-130 (142)
32 cd05779 DNA_polB_epsilon_exo D 21.5 55 0.0012 23.2 1.3 21 7-27 93-115 (204)
33 KOG2566 Beta-glucocerebrosidas 21.4 1.2E+02 0.0025 25.6 3.2 42 16-64 122-167 (518)
34 PRK14623 hypothetical protein; 21.2 74 0.0016 21.0 1.8 23 31-53 37-59 (106)
35 KOG3110 Riboflavin kinase [Coe 20.6 31 0.00067 24.8 -0.1 37 2-42 67-112 (153)
36 KOG4196 bZIP transcription fac 20.4 15 0.00032 25.9 -1.8 10 37-46 65-74 (135)
No 1
>PF05018 DUF667: Protein of unknown function (DUF667); InterPro: IPR007714 This family of proteins are highly conserved in eukaryotes. Some proteins in the family are annotated as transcription factors. However, there is currently no support for this in the literature.
Probab=100.00 E-value=9.9e-35 Score=204.99 Aligned_cols=69 Identities=77% Similarity=1.374 Sum_probs=67.7
Q ss_pred CCcccCcCcchhhccHHHHHHHHhCcceeEEEEEEEecceeeeeeeecccCCCCcCCcccceecccccc
Q 035198 1 MPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQK 69 (70)
Q Consensus 1 mPl~L~~GWN~i~~nL~d~t~~aygT~yvet~rv~i~anCRirRiYFsdrlYs~~eLP~efkl~~~~~~ 69 (70)
|||+|++|||+|+|||+++|+++|||+|+||++|+||||||||||||||++|++||||+||||++|.+.
T Consensus 121 iPl~l~~~W~~l~idL~~~~~~~y~~~~~~sl~i~I~ancrlRrIyfsD~ly~~~elp~~~~l~~~~~~ 189 (190)
T PF05018_consen 121 IPLRLSPGWNNLQIDLADLTRRAYGTNYFESLRIQICANCRLRRIYFSDRLYSEDELPPEFKLYLPKQE 189 (190)
T ss_pred cccccCCCcEEEEEEHHHHHHHHhccCceEEEEEEEecCEEEEEEEecCccCChhhCchhhEEccccCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG3213 consensus Transcription factor IIB [Transcription]
Probab=100.00 E-value=6.7e-34 Score=209.77 Aligned_cols=69 Identities=75% Similarity=1.250 Sum_probs=67.2
Q ss_pred CCcccCcCcchhhccHHHHHHHHhCcceeEEEEEEEecceeeeeeeecccCCCCcCCcccceecccccc
Q 035198 1 MPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQK 69 (70)
Q Consensus 1 mPl~L~~GWN~i~~nL~d~t~~aygT~yvet~rv~i~anCRirRiYFsdrlYs~~eLP~efkl~~~~~~ 69 (70)
|||.|++||||||+||+|||+++|||+|.||++||||||||||||||+|++|+++|+|.+||++.+.++
T Consensus 121 mPl~m~~~W~~iqlnL~dft~~~~~~~y~etl~iql~AncriRriyf~~kl~~~~e~~~~frlm~rf~~ 189 (238)
T KOG3213|consen 121 MPLVMDAGWNQIQLNLADFTRRAYGTNYGETLSIQLHANCRIRRIYFADKLYSEAELPLEFRLMLRFQV 189 (238)
T ss_pred cceEecCcceeEEeeHHHHHHHHhccceeeEEEEEEecceEEEEEEeccccCChhhCCCcceEcccccC
Confidence 899999999999999999999999999999999999999999999999999999999999999988764
No 3
>PRK00153 hypothetical protein; Validated
Probab=66.85 E-value=17 Score=23.23 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=31.3
Q ss_pred hhccHHHHHHHHhCcceeE-----EEEEEEecceeeeeeeecccCCCCc
Q 035198 12 IQLNLADFTRRAYGTNYVE-----TLRVQVHANCRLRRIYFSDRLYSEE 55 (70)
Q Consensus 12 i~~nL~d~t~~aygT~yve-----t~rv~i~anCRirRiYFsdrlYs~~ 55 (70)
+|=.++++-.+.=...+-. .++|.|++++.|.+|-+.++++..+
T Consensus 15 ~q~~~~~~q~~l~~~~~~~~s~~G~V~V~v~G~~~v~~i~Id~~ll~~~ 63 (104)
T PRK00153 15 MQEKMQKMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPSLVDPE 63 (104)
T ss_pred HHHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHHcCCc
Confidence 3444555555554444443 3899999999999999999999543
No 4
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=64.32 E-value=9.3 Score=23.23 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.1
Q ss_pred EEEEEEecceeeeeeeecccCCCC
Q 035198 31 TLRVQVHANCRLRRIYFSDRLYSE 54 (70)
Q Consensus 31 t~rv~i~anCRirRiYFsdrlYs~ 54 (70)
.++|.|+++.++..|-|.++++.+
T Consensus 31 ~V~V~v~g~g~v~~i~i~~~~~~~ 54 (93)
T PF02575_consen 31 LVTVTVNGNGEVVDIEIDPSALRP 54 (93)
T ss_dssp TEEEEEETTS-EEEEEE-GGGGCT
T ss_pred EEEEEEecCceEEEEEEehHhhcc
Confidence 389999999999999999999974
No 5
>PF09103 BRCA-2_OB1: BRCA2, oligonucleotide/oligosaccharide-binding, domain 1; InterPro: IPR015187 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel. OB1 has a shallow groove formed by one face of the curved sheet and is demarcated by two loops, one between beta 1 and beta 2 and another between beta 4 and beta 5, which allows for weak single strand DNA binding. The domain also binds the 70-amino acid DSS1 (deleted in split-hand/split foot syndrome) protein, which was originally identified as one of three genes that map to a 1.5-Mb locus deleted in an inherited developmental malformation syndrome []. ; GO: 0000724 double-strand break repair via homologous recombination; PDB: 1IYJ_D 1MIU_A.
Probab=61.13 E-value=6.6 Score=26.17 Aligned_cols=17 Identities=41% Similarity=0.724 Sum_probs=8.7
Q ss_pred cccCcCcchhhccHHHH
Q 035198 3 LRLDDGWNQIQLNLADF 19 (70)
Q Consensus 3 l~L~~GWN~i~~nL~d~ 19 (70)
+.|.+||-.|..-|..-
T Consensus 37 lelTDGWY~Ika~lD~~ 53 (118)
T PF09103_consen 37 LELTDGWYSIKAQLDPP 53 (118)
T ss_dssp EEEE-SS-EEEE---HH
T ss_pred EEEecCCEEEEEEeCHH
Confidence 56899999887654443
No 6
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=47.21 E-value=11 Score=22.97 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=18.7
Q ss_pred EEEEEEecceeeeeeeecccCCCCcC
Q 035198 31 TLRVQVHANCRLRRIYFSDRLYSEEE 56 (70)
Q Consensus 31 t~rv~i~anCRirRiYFsdrlYs~~e 56 (70)
|+...-+..-.||||=||-+.|++.+
T Consensus 17 Tl~~~p~G~~~LkRVRFSR~~F~e~q 42 (59)
T PF08381_consen 17 TLVSLPDGGNDLKRVRFSRERFSEWQ 42 (59)
T ss_pred EEEECCCCCeeEEEEEEhhhhcCHHH
Confidence 33333345668999999999998654
No 7
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=44.21 E-value=20 Score=20.13 Aligned_cols=11 Identities=55% Similarity=1.189 Sum_probs=8.6
Q ss_pred Eecceeeeeeeeccc
Q 035198 36 VHANCRLRRIYFSDR 50 (70)
Q Consensus 36 i~anCRirRiYFsdr 50 (70)
+.+|| |||.|.
T Consensus 30 ~~~n~----IYf~~~ 40 (54)
T PF03478_consen 30 LKGNC----IYFLDD 40 (54)
T ss_pred ccCCE----EEEecC
Confidence 44666 999998
No 8
>PF12565 DUF3747: Protein of unknown function (DUF3747); InterPro: IPR022222 This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif.
Probab=40.85 E-value=7.6 Score=28.33 Aligned_cols=19 Identities=37% Similarity=0.936 Sum_probs=15.1
Q ss_pred CCcccCcCcchhhccHHHHHHHHhCcc
Q 035198 1 MPLRLDDGWNQIQLNLADFTRRAYGTN 27 (70)
Q Consensus 1 mPl~L~~GWN~i~~nL~d~t~~aygT~ 27 (70)
|.+.|++||. |+||+|+-+
T Consensus 150 ~ki~LePGW~--------l~rRty~gk 168 (181)
T PF12565_consen 150 LKINLEPGWR--------LTRRTYQGK 168 (181)
T ss_pred EEEEeCCCce--------eeehhcCCc
Confidence 3577899995 899999765
No 9
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=39.50 E-value=8 Score=23.61 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=13.2
Q ss_pred cccCCCCcCCccccee
Q 035198 48 SDRLYSEEELPPEFKL 63 (70)
Q Consensus 48 sdrlYs~~eLP~efkl 63 (70)
..||.+++|||.-|+-
T Consensus 17 p~RLm~e~ELPe~~~~ 32 (74)
T PF14619_consen 17 PSRLMEESELPEWYRE 32 (74)
T ss_pred CccccchhhchHHHHh
Confidence 3689999999998764
No 10
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=37.75 E-value=85 Score=20.00 Aligned_cols=38 Identities=21% Similarity=0.452 Sum_probs=29.6
Q ss_pred HHHHHHHHhCcceeEEEEEEEecceeeeeeeecccCCCCcCCcccc
Q 035198 16 LADFTRRAYGTNYVETLRVQVHANCRLRRIYFSDRLYSEEELPPEF 61 (70)
Q Consensus 16 L~d~t~~aygT~yvet~rv~i~anCRirRiYFsdrlYs~~eLP~ef 61 (70)
|-.|..+.||. .+.+.-++..|.+.|...+ .+++|+|.
T Consensus 50 li~~La~~l~v----~I~i~~G~tsR~K~v~I~~----~~~~~~~~ 87 (87)
T TIGR00251 50 LIKFFGEIFGV----DVEIVSGELSRQKTIKIIN----PRDIPPEI 87 (87)
T ss_pred HHHHHHHHhCc----eEEEEecCCCCceEEEEeC----cccccccC
Confidence 55677888987 6777778999999998766 56778763
No 11
>PF11606 AlcCBM31: Family 31 carbohydrate binding protein; InterPro: IPR021016 Beta-1,3-xylan is a homopolymer of b-1,3-linked D-xylose and is a polysaccharide peculiar to marine algae. Beta-1,3-xylanase is a beta-1,3-xylan hydrolyzing enzyme [].; GO: 0033905 xylan endo-1,3-beta-xylosidase activity; PDB: 2COV_F.
Probab=35.98 E-value=11 Score=25.05 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=7.3
Q ss_pred ccCcCcchhhcc
Q 035198 4 RLDDGWNQIQLN 15 (70)
Q Consensus 4 ~L~~GWN~i~~n 15 (70)
+-+.|||+|++|
T Consensus 28 gWsAgwnY~CLd 39 (93)
T PF11606_consen 28 GWSAGWNYLCLD 39 (93)
T ss_dssp ----SSEEEEET
T ss_pred CccceeeEEEec
Confidence 346899999987
No 12
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=35.59 E-value=38 Score=18.94 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=28.5
Q ss_pred ccCcCcchhhccHHHHHHHHhCcceeEEEEEEE
Q 035198 4 RLDDGWNQIQLNLADFTRRAYGTNYVETLRVQV 36 (70)
Q Consensus 4 ~L~~GWN~i~~nL~d~t~~aygT~yvet~rv~i 36 (70)
++..|.|-+.+|+.++-.+.-.-.+++.+.|.-
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~p~V~~v~V~r 56 (69)
T PF08478_consen 24 GIQKGKNLFSLDLKKIEQRLEKLPWVKSVSVSR 56 (69)
T ss_dssp CTTSTTTCCCSHHHHHHHCCCCTTTEEEEEEEE
T ss_pred CcCCCCeEEEECHHHHHHHHHcCCCEEEEEEEE
Confidence 566789999999999999998899999888763
No 13
>PRK14626 hypothetical protein; Provisional
Probab=35.31 E-value=41 Score=22.20 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=22.6
Q ss_pred EEEEEEecceeeeeeeecccCCCCcC
Q 035198 31 TLRVQVHANCRLRRIYFSDRLYSEEE 56 (70)
Q Consensus 31 t~rv~i~anCRirRiYFsdrlYs~~e 56 (70)
.++|.+..+..|.+|-+++.+...++
T Consensus 41 ~VkV~~nG~~ev~~i~Id~~ll~~ed 66 (110)
T PRK14626 41 MVKVVSNGLGEIKDVEIDKSLLNEDE 66 (110)
T ss_pred EEEEEEECCccEEEEEECHHHcCccc
Confidence 38999999999999999999887543
No 14
>PRK14627 hypothetical protein; Provisional
Probab=34.38 E-value=45 Score=21.56 Aligned_cols=26 Identities=12% Similarity=0.322 Sum_probs=23.0
Q ss_pred EEEEEEecceeeeeeeecccCCCCcC
Q 035198 31 TLRVQVHANCRLRRIYFSDRLYSEEE 56 (70)
Q Consensus 31 t~rv~i~anCRirRiYFsdrlYs~~e 56 (70)
.++|.+..+..|.+|-+.+.+..+|+
T Consensus 37 ~VkV~~~G~~~v~~i~Idp~ll~~ed 62 (100)
T PRK14627 37 AITVKMNGHREVQSITISPEVVDPDD 62 (100)
T ss_pred eEEEEEEcCccEEEEEECHHHcCccc
Confidence 48999999999999999999987554
No 15
>cd04493 BRCA2DBD_OB1 BRCA2DBD_OB1: A subfamily of OB folds corresponding to the first OB fold (OB1) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA). BRCA2DBD OB1 binds DNA weakly.
Probab=31.26 E-value=37 Score=22.54 Aligned_cols=20 Identities=30% Similarity=0.644 Sum_probs=13.5
Q ss_pred EEEEEEEecceeeeeeeeccc
Q 035198 30 ETLRVQVHANCRLRRIYFSDR 50 (70)
Q Consensus 30 et~rv~i~anCRirRiYFsdr 50 (70)
+++.++||+|| .||+.-..+
T Consensus 78 ~~~~L~l~~Ns-tr~a~w~~~ 97 (100)
T cd04493 78 DSVRLKINANS-TRRARWDAR 97 (100)
T ss_pred CcEEEEEEccc-eeccccccc
Confidence 56889999998 455544433
No 16
>PRK14622 hypothetical protein; Provisional
Probab=30.44 E-value=60 Score=21.13 Aligned_cols=26 Identities=12% Similarity=0.431 Sum_probs=22.4
Q ss_pred EEEEEEecceeeeeeeecccCCCCcC
Q 035198 31 TLRVQVHANCRLRRIYFSDRLYSEEE 56 (70)
Q Consensus 31 t~rv~i~anCRirRiYFsdrlYs~~e 56 (70)
.++|.+..+..|.+|-+.+.+..+++
T Consensus 37 ~VkV~~nG~~~v~~i~Idp~~l~~ed 62 (103)
T PRK14622 37 LVKVAMNGKCEVTRLTVDPKAVDPND 62 (103)
T ss_pred eEEEEEEcCceEEEEEECHHHcCccc
Confidence 48999999999999999999886443
No 17
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=29.97 E-value=1.1e+02 Score=19.68 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=28.5
Q ss_pred ccHHHHHHHHhCcceeEE-----EEEEEecceeeeeeeecccCCC
Q 035198 14 LNLADFTRRAYGTNYVET-----LRVQVHANCRLRRIYFSDRLYS 53 (70)
Q Consensus 14 ~nL~d~t~~aygT~yvet-----~rv~i~anCRirRiYFsdrlYs 53 (70)
=.++++-.+.=.+.+..+ ++|.+.++..+.+|-+.++++.
T Consensus 19 ~k~~~~q~eL~~~~v~g~sggGlV~V~~~G~~~v~~v~Id~~~l~ 63 (102)
T TIGR00103 19 EKMKKLQEEIAQFEVTGKSGAGLVTVTINGNLELKSIEIDPSLLE 63 (102)
T ss_pred HHHHHHHHHHhccEEEEEECCCEEEEEEEcCceEEEEEECHHHHh
Confidence 344444444433444333 8999999999999999999997
No 18
>PF11549 Sec31: Protein transport protein SEC31; InterPro: IPR021614 Sec31 is involved in COPII coat formation as it forms through the sequential binding of three cytoplasmic proteins: Sar1, Sec23/24 and Sec13/31. Sec13/31 is recruited by the pre-budding complex and polymerisation of Sec13/31 occurs to form an octahedral cage that is the outer shell of the COPII coat []. Sec13/31 is a hetero-tetramer which is organised as a linear array of alpha-solenoid and beta-propeller domains to form a rod in which twenty-four copies assemble to form the COPII cub-octahedron []. ; PDB: 2QTV_D.
Probab=29.85 E-value=16 Score=22.00 Aligned_cols=18 Identities=39% Similarity=0.881 Sum_probs=4.3
Q ss_pred CcCcchhhccHHHHHHHH
Q 035198 6 DDGWNQIQLNLADFTRRA 23 (70)
Q Consensus 6 ~~GWN~i~~nL~d~t~~a 23 (70)
.+|||.+-++..+=..||
T Consensus 23 NdGWNDLpl~vkEKpsRA 40 (51)
T PF11549_consen 23 NDGWNDLPLKVKEKPSRA 40 (51)
T ss_dssp HS-TT---S---------
T ss_pred cCcccccchhhhcccccc
Confidence 589999999998866554
No 19
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=29.30 E-value=25 Score=17.27 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=8.2
Q ss_pred eeeeeecccCC
Q 035198 42 LRRIYFSDRLY 52 (70)
Q Consensus 42 irRiYFsdrlY 52 (70)
=+++||+|..-
T Consensus 20 ~~~lYw~D~~~ 30 (43)
T smart00135 20 EGRLYWTDWGL 30 (43)
T ss_pred CCEEEEEeCCC
Confidence 35899999654
No 20
>PF02033 RBFA: Ribosome-binding factor A; InterPro: IPR000238 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosome-binding factor A [] (gene rbfA) is a bacterial protein that associates with free 30S ribosomal subunits. It does not associate with 30S subunits that are part of 70S ribosomes or polysomes. It is essential for efficient processing of 16S rRNA. Ribosome-binding factor A is a protein of from 13 to 15 Kd which is found in most bacteria. A putative chloroplastic form seems to exist in plants.; GO: 0006364 rRNA processing; PDB: 2R1C_A 2DYJ_B 2KZF_A 2E7G_A 1JOS_A 1KKG_A 1PA4_A.
Probab=27.97 E-value=80 Score=19.59 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred ceeEEEEEEEecceeeeeeeecc
Q 035198 27 NYVETLRVQVHANCRLRRIYFSD 49 (70)
Q Consensus 27 ~yvet~rv~i~anCRirRiYFsd 49 (70)
..+...+|.+.++++.-+||++-
T Consensus 27 ~~vtIt~V~ls~Dl~~a~Vy~~~ 49 (104)
T PF02033_consen 27 KLVTITRVELSPDLSHAKVYVSI 49 (104)
T ss_dssp HCEEEEEEEECTTSSEEEEEEEE
T ss_pred ceEEEEEEEECCCCCEEEEEEEE
Confidence 57888999999999999999963
No 21
>PRK14625 hypothetical protein; Provisional
Probab=26.59 E-value=1.8e+02 Score=19.30 Aligned_cols=44 Identities=30% Similarity=0.307 Sum_probs=30.4
Q ss_pred hccHHHHHHHHhCcceeEE-----EEEEEecceeeeeeeecccCCCCcC
Q 035198 13 QLNLADFTRRAYGTNYVET-----LRVQVHANCRLRRIYFSDRLYSEEE 56 (70)
Q Consensus 13 ~~nL~d~t~~aygT~yvet-----~rv~i~anCRirRiYFsdrlYs~~e 56 (70)
|=.+++.-...--+.+..+ ++|.+..+..|.+|-..+.+..+++
T Consensus 15 Q~km~~~Q~el~~~~v~g~sggG~VkV~~~G~~~v~~I~Idp~ll~~eD 63 (109)
T PRK14625 15 QQKLADAQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDESLVQPGE 63 (109)
T ss_pred HHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHHcCCcc
Confidence 3344444444444444443 8999999999999999999887554
No 22
>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1. This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].
Probab=26.33 E-value=19 Score=26.89 Aligned_cols=44 Identities=14% Similarity=0.296 Sum_probs=28.6
Q ss_pred CcccCcCcchhhccHHHHHHHHhCcceeEEEEEEEecceeeeeee
Q 035198 2 PLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIY 46 (70)
Q Consensus 2 Pl~L~~GWN~i~~nL~d~t~~aygT~yvet~rv~i~anCRirRiY 46 (70)
|+..++|||+|- |+.+-+-++-+.-=||-.+++-+..-+-++||
T Consensus 3 ~~~~~~~w~~ip-~v~~~~~q~v~~~~veq~k~~~~~~l~~~~v~ 46 (202)
T PF07430_consen 3 QVPFSPKWIKIP-DVKEPCLQEVAKFAVEQFKIQYGDSLKFRSVV 46 (202)
T ss_pred CcccCcccccCC-cccchHHHHHHHHHHHHHhhhcccceeeeeee
Confidence 567889999985 66666666655555666666654444555554
No 23
>COG1652 XkdP Uncharacterized protein containing LysM domain [Function unknown]
Probab=25.59 E-value=41 Score=24.21 Aligned_cols=41 Identities=24% Similarity=0.466 Sum_probs=31.3
Q ss_pred HHHHHHHHhCcceeEEEEEEEecceeeeeeeeccc---CCCCcCCcccceeccccc
Q 035198 16 LADFTRRAYGTNYVETLRVQVHANCRLRRIYFSDR---LYSEEELPPEFKLYLPMQ 68 (70)
Q Consensus 16 L~d~t~~aygT~yvet~rv~i~anCRirRiYFsdr---lYs~~eLP~efkl~~~~~ 68 (70)
|+++.++.||... +-++||.+.+ +=+.+.+.+.-++-+|-+
T Consensus 221 l~~is~~~Yg~~~------------~y~~I~~aNk~~~~~~p~~I~pGq~l~iP~~ 264 (269)
T COG1652 221 LWQISKKVYGDGV------------EYRKIAEANKALVLDNPDKIKPGQVLRIPDQ 264 (269)
T ss_pred ccccchhhcCcce------------EEEeHhhhhhhhccCCCCcCCCcceeeCCCc
Confidence 5667888898765 7788998888 444588888888877754
No 24
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=25.15 E-value=27 Score=26.46 Aligned_cols=40 Identities=28% Similarity=0.353 Sum_probs=18.8
Q ss_pred HHhCcceeEEEEEEEecce-------------eeeeeeecccCCCCcCCcccc
Q 035198 22 RAYGTNYVETLRVQVHANC-------------RLRRIYFSDRLYSEEELPPEF 61 (70)
Q Consensus 22 ~aygT~yvet~rv~i~anC-------------RirRiYFsdrlYs~~eLP~ef 61 (70)
+.+|-.-+-.-+||+++.- -+||||+.||.-++-.++++.
T Consensus 23 ~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~e 75 (233)
T PF01745_consen 23 QKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEE 75 (233)
T ss_dssp HHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHH
T ss_pred HHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHH
Confidence 4455555555566665542 278999999999998888775
No 25
>KOG4699 consensus Preprotein translocase subunit Sec66 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.98 E-value=27 Score=25.65 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=9.2
Q ss_pred ccCcCcchhhc
Q 035198 4 RLDDGWNQIQL 14 (70)
Q Consensus 4 ~L~~GWN~i~~ 14 (70)
+|.|||+|.-|
T Consensus 127 ~lqPGw~q~if 137 (180)
T KOG4699|consen 127 ILQPGWGQEIF 137 (180)
T ss_pred hcCCchhHHHH
Confidence 58999999765
No 26
>COG5538 SEC66 Endoplasmic reticulum translocation complex, subunit SEC66 [Cell motility and secretion]
Probab=24.98 E-value=27 Score=25.65 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=9.2
Q ss_pred ccCcCcchhhc
Q 035198 4 RLDDGWNQIQL 14 (70)
Q Consensus 4 ~L~~GWN~i~~ 14 (70)
+|.|||+|.-|
T Consensus 127 ~lqPGw~q~if 137 (180)
T COG5538 127 ILQPGWGQEIF 137 (180)
T ss_pred hcCCchhHHHH
Confidence 58999999765
No 27
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=24.25 E-value=60 Score=23.45 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEEEEEecceeeeeeeecccCCCCcCCcccce-eccccc
Q 035198 30 ETLRVQVHANCRLRRIYFSDRLYSEEELPPEFK-LYLPMQ 68 (70)
Q Consensus 30 et~rv~i~anCRirRiYFsdrlYs~~eLP~efk-l~~~~~ 68 (70)
+-..|.++.||.+-= =+....-...|||..+| +|.|+.
T Consensus 125 ~g~~i~l~~~~~iFi-T~np~y~gr~~LP~nLk~lFRpva 163 (231)
T PF12774_consen 125 EGQEIKLNPNCGIFI-TMNPGYAGRSELPENLKALFRPVA 163 (231)
T ss_dssp TTCEEE--TT-EEEE-EE-B-CCCC--S-HHHCTTEEEEE
T ss_pred CCCEEEEccceeEEE-eeccccCCcccCCHhHHHHhheeE
Confidence 346789999997653 23443335799999998 666653
No 28
>PF10714 LEA_6: Late embryogenesis abundant protein 18; InterPro: IPR018930 This is a family of late embryogenesis-abundant proteins There is high accumulation of this protein in dry seeds, and in the roots of full-grown plants in response to dehydration and ABA (abscisic acid application) treatments []. This LEA protein disappears after germination. It accumulates in growing regions of well irrigated hypocotyls and meristems suggesting a role in seedling growth resumption on rehydration []. As a group the LEA proteins are highly hydrophilic, contain a high percentage of glycine residues, lack Cys and Trp residues and do not coagulate upon exposure to high temperature, and for these reasons are considered to be members of a group of proteins called hydrophilins []. Expression of the protein is negatively regulated during etiolating growth, particularly in roots, in contrast to its expression patterns during normal growth [].
Probab=24.00 E-value=41 Score=21.82 Aligned_cols=13 Identities=46% Similarity=1.071 Sum_probs=11.7
Q ss_pred cHHHHHHHHhCcc
Q 035198 15 NLADFTRRAYGTN 27 (70)
Q Consensus 15 nL~d~t~~aygT~ 27 (70)
||.|+-+++|||.
T Consensus 25 ~LEDYK~~gYGt~ 37 (79)
T PF10714_consen 25 DLEDYKRKGYGTE 37 (79)
T ss_pred cHHHHhhhccccc
Confidence 6999999999984
No 29
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=23.23 E-value=51 Score=18.25 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=14.1
Q ss_pred chhhccHH--HHHHHHhCcceeE
Q 035198 10 NQIQLNLA--DFTRRAYGTNYVE 30 (70)
Q Consensus 10 N~i~~nL~--d~t~~aygT~yve 30 (70)
|....++. +..+..||.||-.
T Consensus 4 Ny~d~~~~~~~~~~~yyg~n~~r 26 (47)
T PF08031_consen 4 NYPDPDLPGDDWQEAYYGENYDR 26 (47)
T ss_dssp TS--GGGGSSHHHHHHHGGGHHH
T ss_pred cCCCCccchhHHHHHHhchhHHH
Confidence 44555666 8888999988753
No 30
>PF14332 DUF4388: Domain of unknown function (DUF4388)
Probab=23.19 E-value=1.8e+02 Score=17.30 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=23.0
Q ss_pred hccHHHHHHHHhCcceeEEEEEEEecceeeeeeeeccc
Q 035198 13 QLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFSDR 50 (70)
Q Consensus 13 ~~nL~d~t~~aygT~yvet~rv~i~anCRirRiYFsdr 50 (70)
.|+|.|+.+..-..+-=-++.| ..+-.-.+|||.|-
T Consensus 6 ~~~l~dlLq~l~~~~ktG~L~v--~~~~~~~~i~f~~G 41 (103)
T PF14332_consen 6 DFSLPDLLQLLEQSRKTGVLEV--QSGGGEGRIYFRDG 41 (103)
T ss_pred cCCHHHHHHHHHhcCCeEEEEE--EeCCcEEEEEEECC
Confidence 4678888888766554444444 44444467999874
No 31
>PF00739 X: Trans-activation protein X; InterPro: IPR000236 The Hepatitis B virus (HBV) X gene shares sequences with both the polymerase and precore genes, carries several regulatory signals critical to the replicative cycle, and its product has a transactivating function []. The transactivating function is probably associated with a tumourigenic potential of HBx, since x gene sequences, encoding functional HBx, have been repeatedly found integrated into the genome of liver carcinoma cells [].; GO: 0019079 viral genome replication; PDB: 3I7H_B 3I7K_B.
Probab=22.70 E-value=28 Score=24.69 Aligned_cols=21 Identities=38% Similarity=0.744 Sum_probs=0.0
Q ss_pred eeeecccCCCC-cCCcccceec
Q 035198 44 RIYFSDRLYSE-EELPPEFKLY 64 (70)
Q Consensus 44 RiYFsdrlYs~-~eLP~efkl~ 64 (70)
.-||.|.++.+ ||+..|.+|.
T Consensus 109 eaYfKDcvfk~WEElGee~RL~ 130 (142)
T PF00739_consen 109 EAYFKDCVFKDWEELGEEIRLM 130 (142)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHhhhcccceEE
Confidence 46999999998 9999997764
No 32
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon. DNA polymerase epsilon is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and delta are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase epsilon plays a role in elongating the leading strand during DNA replication. It is also involved in DNA repair. The catalytic subunit contains both polymerase and 3'-5' exonuclease activities. The N-terminal exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. DNA polymerase epsilon also carries a unique
Probab=21.51 E-value=55 Score=23.19 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=18.0
Q ss_pred cCcchhhccHHHHHHHH--hCcc
Q 035198 7 DGWNQIQLNLADFTRRA--YGTN 27 (70)
Q Consensus 7 ~GWN~i~~nL~d~t~~a--ygT~ 27 (70)
.|||-..||+.=+.+|| +|-.
T Consensus 93 ~gyN~~~FD~pyl~~R~~~~~~~ 115 (204)
T cd05779 93 VTYNGDFFDWPFVEARAAIHGLS 115 (204)
T ss_pred EecCccccCHHHHHHHHHHhCCC
Confidence 59999999999999997 5543
No 33
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=21.41 E-value=1.2e+02 Score=25.56 Aligned_cols=42 Identities=33% Similarity=0.599 Sum_probs=30.1
Q ss_pred HHHHHHHHh----CcceeEEEEEEEecceeeeeeeecccCCCCcCCcccceec
Q 035198 16 LADFTRRAY----GTNYVETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLY 64 (70)
Q Consensus 16 L~d~t~~ay----gT~yvet~rv~i~anCRirRiYFsdrlYs~~eLP~efkl~ 64 (70)
|+|+.-+.| |-+|. --||.|.++ =||-|.||-|+.|.+|.|.
T Consensus 122 ~q~~il~~YFsd~Gl~y~-~gRVPiAS~------DFS~r~YsYdDv~~Df~l~ 167 (518)
T KOG2566|consen 122 LQNLILKSYFSDEGLGYN-IGRVPIASC------DFSTREYSYDDVPDDFQLK 167 (518)
T ss_pred HHHHHHHHhhcccCccce-eeeeeeccc------ccccceeeccCCccccccc
Confidence 566666665 44443 357776544 4999999999999998873
No 34
>PRK14623 hypothetical protein; Provisional
Probab=21.24 E-value=74 Score=21.01 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEEEecceeeeeeeecccCCC
Q 035198 31 TLRVQVHANCRLRRIYFSDRLYS 53 (70)
Q Consensus 31 t~rv~i~anCRirRiYFsdrlYs 53 (70)
.++|.+.++.+|.+|-..+.++.
T Consensus 37 ~VkVt~~G~~~i~~i~Idp~~l~ 59 (106)
T PRK14623 37 LLKVTVTANREIKSISIDDELLE 59 (106)
T ss_pred eEEEEEEcCccEEEEEECHHHcC
Confidence 38999999999999999999984
No 35
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=20.63 E-value=31 Score=24.78 Aligned_cols=37 Identities=35% Similarity=0.577 Sum_probs=24.5
Q ss_pred CcccCcCcchhhcc---------HHHHHHHHhCcceeEEEEEEEecceee
Q 035198 2 PLRLDDGWNQIQLN---------LADFTRRAYGTNYVETLRVQVHANCRL 42 (70)
Q Consensus 2 Pl~L~~GWN~i~~n---------L~d~t~~aygT~yvet~rv~i~anCRi 42 (70)
||.|+-|||-.-=| +.||...-|| ||+++-|-.-.|=
T Consensus 67 kMvmSIGwNP~Y~N~~Kt~E~hlih~f~~DFYg----e~l~~~IvGyiRp 112 (153)
T KOG3110|consen 67 KMVMSIGWNPYYKNKKKTMELHLIHDFGEDFYG----ETLKVIIVGYIRP 112 (153)
T ss_pred eEEEEcccCcccCCcccceeeeeehhcccchhh----heeeEEEEEeecc
Confidence 79999999976544 3344444444 7788877665543
No 36
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=20.42 E-value=15 Score=25.93 Aligned_cols=10 Identities=30% Similarity=0.889 Sum_probs=8.3
Q ss_pred ecceeeeeee
Q 035198 37 HANCRLRRIY 46 (70)
Q Consensus 37 ~anCRirRiY 46 (70)
.+|||++||=
T Consensus 65 A~sCR~KRv~ 74 (135)
T KOG4196|consen 65 AQSCRVKRVQ 74 (135)
T ss_pred HHHHHHHHHH
Confidence 6899999974
Done!