Query 035198
Match_columns 70
No_of_seqs 90 out of 92
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:27:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cov_D Beta-1,3-xylanase; carb 37.3 7.3 0.00025 25.4 0.1 12 4-15 31-42 (104)
2 2jrw_A Cyclic extended PEP.1; 34.2 13 0.00045 18.7 0.7 10 45-54 10-19 (26)
3 2rod_B NOXA, noxaa; MCL-1, apo 27.6 14 0.00049 18.7 0.2 9 55-63 1-9 (27)
4 2uyz_B Small ubiquitin-related 23.7 21 0.00071 19.6 0.4 21 43-63 44-64 (79)
5 1wm3_A Ubiquitin-like protein 21.0 42 0.0014 18.7 1.4 20 44-63 43-62 (72)
6 3n3f_A Collagen alpha-1(XV) ch 20.8 18 0.0006 20.7 -0.3 12 3-14 35-46 (54)
7 2atz_A H. pylori predicted cod 20.4 29 0.00098 24.5 0.6 15 50-64 147-161 (180)
8 1ybx_A Conserved hypothetical 19.8 98 0.0034 20.5 3.2 25 32-56 78-102 (143)
9 2iuk_A SEED lipoxygenase; iron 19.8 47 0.0016 28.1 1.9 24 41-64 164-187 (864)
10 1j8b_A YBAB; hypothetical prot 17.9 92 0.0031 19.5 2.6 22 32-53 45-66 (112)
No 1
>2cov_D Beta-1,3-xylanase; carbohydrate-binding module, family 31 CBM, beta-1,3-xylanas binding protein; 1.25A {Alcaligenes SP}
Probab=37.29 E-value=7.3 Score=25.40 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=9.9
Q ss_pred ccCcCcchhhcc
Q 035198 4 RLDDGWNQIQLN 15 (70)
Q Consensus 4 ~L~~GWN~i~~n 15 (70)
+-+.|||+|++|
T Consensus 31 gWsAgwnY~CLd 42 (104)
T 2cov_D 31 GWSAGWNYVCLN 42 (104)
T ss_dssp CCCCSSEEEEET
T ss_pred CccceeeEEEec
Confidence 457899999987
No 2
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=34.24 E-value=13 Score=18.73 Aligned_cols=10 Identities=50% Similarity=0.879 Sum_probs=8.4
Q ss_pred eeecccCCCC
Q 035198 45 IYFSDRLYSE 54 (70)
Q Consensus 45 iYFsdrlYs~ 54 (70)
-|||+|.|..
T Consensus 10 nyfserpyhp 19 (26)
T 2jrw_A 10 NYFSERPYHP 19 (26)
T ss_dssp SSCCSSSCCS
T ss_pred hhcccCCCCC
Confidence 4999999975
No 3
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=27.60 E-value=14 Score=18.75 Aligned_cols=9 Identities=67% Similarity=1.176 Sum_probs=6.9
Q ss_pred cCCccccee
Q 035198 55 EELPPEFKL 63 (70)
Q Consensus 55 ~eLP~efkl 63 (70)
.|||+||.-
T Consensus 1 aelppefaa 9 (27)
T 2rod_B 1 AELPPEFAA 9 (27)
T ss_dssp CCCCTHHHH
T ss_pred CCCChHHHH
Confidence 489999853
No 4
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=23.69 E-value=21 Score=19.56 Aligned_cols=21 Identities=19% Similarity=0.437 Sum_probs=16.9
Q ss_pred eeeeecccCCCCcCCccccee
Q 035198 43 RRIYFSDRLYSEEELPPEFKL 63 (70)
Q Consensus 43 rRiYFsdrlYs~~eLP~efkl 63 (70)
-|++|..+...++..+.+|.+
T Consensus 44 qrL~~~G~~L~d~~tl~~~~i 64 (79)
T 2uyz_B 44 LRFLFEGQRIADNHTPKELGM 64 (79)
T ss_dssp EEEEETTEECCTTCCHHHHTC
T ss_pred EEEEECCEEeCCCCCHHHcCC
Confidence 367888888889888888765
No 5
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=21.02 E-value=42 Score=18.66 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=16.3
Q ss_pred eeeecccCCCCcCCccccee
Q 035198 44 RIYFSDRLYSEEELPPEFKL 63 (70)
Q Consensus 44 RiYFsdrlYs~~eLP~efkl 63 (70)
|..|..+..++++.|.++.|
T Consensus 43 rf~fdG~~l~~~~Tp~~l~m 62 (72)
T 1wm3_A 43 RFRFDGQPINETDTPAQLEM 62 (72)
T ss_dssp EEEETTEECCTTCCTTTTTC
T ss_pred EEEECCEEcCCCCCHHHcCC
Confidence 67778888888999998875
No 6
>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens}
Probab=20.79 E-value=18 Score=20.70 Aligned_cols=12 Identities=50% Similarity=1.284 Sum_probs=9.5
Q ss_pred cccCcCcchhhc
Q 035198 3 LRLDDGWNQIQL 14 (70)
Q Consensus 3 l~L~~GWN~i~~ 14 (70)
+|...||.+|+.
T Consensus 35 iRVr~Gwr~v~L 46 (54)
T 3n3f_A 35 IRVRDGWKKLQL 46 (54)
T ss_dssp EEETTEEEECCC
T ss_pred EEEcCceeeeec
Confidence 467789999886
No 7
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=20.42 E-value=29 Score=24.53 Aligned_cols=15 Identities=27% Similarity=0.782 Sum_probs=11.8
Q ss_pred cCCCCcCCcccceec
Q 035198 50 RLYSEEELPPEFKLY 64 (70)
Q Consensus 50 rlYs~~eLP~efkl~ 64 (70)
|.+...+||++|.+.
T Consensus 147 r~fPs~dlP~~fNIl 161 (180)
T 2atz_A 147 KVFPSNEWPKEFNIL 161 (180)
T ss_dssp EEESCTTSCGGGCEE
T ss_pred eeCCCccCChhccee
Confidence 456778999999875
No 8
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=19.84 E-value=98 Score=20.54 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=22.5
Q ss_pred EEEEEecceeeeeeeecccCCCCcC
Q 035198 32 LRVQVHANCRLRRIYFSDRLYSEEE 56 (70)
Q Consensus 32 ~rv~i~anCRirRiYFsdrlYs~~e 56 (70)
++|.+.++-.|++|-+.+.+..+++
T Consensus 78 VkVtvnG~~ev~~I~Idp~lldpeD 102 (143)
T 1ybx_A 78 VTVVATGRKDIKEITIKPEVVDPDD 102 (143)
T ss_dssp EEEEEETTCCEEEEEECGGGCCTTC
T ss_pred EEEEEecCceEEEEEECHHHcCCcC
Confidence 8999999999999999999997544
No 9
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max}
Probab=19.78 E-value=47 Score=28.07 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=20.5
Q ss_pred eeeeeeecccCCCCcCCcccceec
Q 035198 41 RLRRIYFSDRLYSEEELPPEFKLY 64 (70)
Q Consensus 41 RirRiYFsdrlYs~~eLP~efkl~ 64 (70)
.-.||||+.+.|=..|.|+-+|-+
T Consensus 164 ~~~RifF~n~~ylp~~tp~~l~~~ 187 (864)
T 2iuk_A 164 KKNRIFFVNDTYLPSATPAPLLKY 187 (864)
T ss_dssp SSCEEEEBSCCCCTTTSCGGGHHH
T ss_pred CCCceeccCCCcCcccCcHHHHHH
Confidence 357999999999999999987644
No 10
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=17.92 E-value=92 Score=19.46 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEEecceeeeeeeecccCCC
Q 035198 32 LRVQVHANCRLRRIYFSDRLYS 53 (70)
Q Consensus 32 ~rv~i~anCRirRiYFsdrlYs 53 (70)
++|.+.++..|++|-+.+.+..
T Consensus 45 V~Vt~~G~~ev~~i~Idp~~~~ 66 (112)
T 1j8b_A 45 VKITINGAHNCRRIDIDPSLME 66 (112)
T ss_dssp EEEEEETTCCEEEEEECGGGGG
T ss_pred EEEEEecCceEEEEEECHHHHh
Confidence 8999999999999999999986
Done!