Query 035198
Match_columns 70
No_of_seqs 90 out of 92
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 16:27:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035198.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035198hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t6la1 d.131.1.2 (A:10-135) U 33.3 12 0.00086 23.5 2.2 23 31-57 49-71 (126)
2 d1josa_ d.52.7.1 (A:) Ribosome 32.7 34 0.0025 19.0 4.1 38 12-49 9-49 (100)
3 d1v0aa1 b.18.1.30 (A:4-170) En 31.8 1.6 0.00011 26.6 -2.3 23 4-26 105-127 (167)
4 d1xjva1 b.40.4.3 (A:6-145) Pro 26.3 31 0.0023 20.8 3.3 35 24-61 34-68 (140)
5 d2vy4a1 g.37.1.7 (A:53-87) U11 25.2 2.6 0.00019 21.6 -1.8 10 38-47 24-33 (35)
6 d1euvb_ d.15.1.1 (B:) SUMO-1 ( 23.1 17 0.0012 19.4 1.4 20 44-63 45-64 (79)
7 d1iyjb3 b.40.4.3 (B:2599-2731) 20.7 13 0.00095 23.0 0.6 48 3-51 51-124 (133)
8 d1oh4a_ b.18.1.18 (A:) Beta-ma 20.4 4.7 0.00034 26.5 -1.7 43 3-45 96-145 (174)
9 d2e7ga1 d.52.7.1 (A:86-201) Ri 19.9 30 0.0022 19.8 2.2 22 28-49 36-57 (116)
10 d1pkha_ b.85.4.1 (A:) Bifuncti 19.2 25 0.0018 21.0 1.7 16 33-48 152-167 (182)
No 1
>d1t6la1 d.131.1.2 (A:10-135) UL44 {Human cytomegalovirus, HHV-5 [TaxId: 10359]}
Probab=33.34 E-value=12 Score=23.50 Aligned_cols=23 Identities=13% Similarity=0.661 Sum_probs=19.0
Q ss_pred EEEEEEecceeeeeeeecccCCCCcCC
Q 035198 31 TLRVQVHANCRLRRIYFSDRLYSEEEL 57 (70)
Q Consensus 31 t~rv~i~anCRirRiYFsdrlYs~~eL 57 (70)
..++.+++.| +|-+|+-|+...+
T Consensus 49 V~KitfnssC----LyitD~~F~~KTI 71 (126)
T d1t6la1 49 VSKITFNSSC----LYITDKSFQPKTI 71 (126)
T ss_dssp EEEEEECGGG----EEESCTTCCCEEE
T ss_pred eeeEEecceE----EEEecCccccccc
Confidence 3678999999 9999999886544
No 2
>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
Probab=32.70 E-value=34 Score=19.03 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=28.0
Q ss_pred hhccHHHHHHHHh---CcceeEEEEEEEecceeeeeeeecc
Q 035198 12 IQLNLADFTRRAY---GTNYVETLRVQVHANCRLRRIYFSD 49 (70)
Q Consensus 12 i~~nL~d~t~~ay---gT~yvet~rv~i~anCRirRiYFsd 49 (70)
|+=-|+++..+.. +-..+..++|.+-+..+.-+||+|-
T Consensus 9 i~~~is~il~~~i~d~~l~~vtIt~V~~S~Dl~~A~Vy~s~ 49 (100)
T d1josa_ 9 IQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTF 49 (100)
T ss_dssp HHHHHHHHHHHHCCCTTTCCEEEEEEEECTTSCEEEEEEEE
T ss_pred HHHHHHHHHHHhccCcccCceEEEEEEEcCCcceEEEEEEe
Confidence 3444555555532 2257889999999999999999985
No 3
>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]}
Probab=31.76 E-value=1.6 Score=26.61 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=19.2
Q ss_pred ccCcCcchhhccHHHHHHHHhCc
Q 035198 4 RLDDGWNQIQLNLADFTRRAYGT 26 (70)
Q Consensus 4 ~L~~GWN~i~~nL~d~t~~aygT 26 (70)
...++|++|.|..++|.++.++.
T Consensus 105 ~~~~~W~~V~IPF~~F~~~~~~~ 127 (167)
T d1v0aa1 105 TPDSSWKTIEIPFSSFRRRLDYQ 127 (167)
T ss_dssp CCCSSCEEEEEEGGGCEECCSCC
T ss_pred ecCCccEEEEEEHHHcccccccC
Confidence 45789999999999999877644
No 4
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.30 E-value=31 Score=20.78 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=25.5
Q ss_pred hCcceeEEEEEEEecceeeeeeeecccCCCCcCCcccc
Q 035198 24 YGTNYVETLRVQVHANCRLRRIYFSDRLYSEEELPPEF 61 (70)
Q Consensus 24 ygT~yvet~rv~i~anCRirRiYFsdrlYs~~eLP~ef 61 (70)
=||.|..|++|.=..+--|.-.+|++ ..|+||.-.
T Consensus 34 ~g~D~~~tl~I~D~S~~gl~v~iF~~---~~~~LP~v~ 68 (140)
T d1xjva1 34 KGTDYCSVVTIVDQTNVKLTCLLFSG---NYEALPIIY 68 (140)
T ss_dssp SSSSEEEEEEEECTTCCEEEEEEEES---SGGGSCCCC
T ss_pred CCCeEEEEEEEEeCCCCCeEEEEECC---ChHHCCCCC
Confidence 38999999999666666677788876 346788633
No 5
>d2vy4a1 g.37.1.7 (A:53-87) U11/U12 small nuclear ribonucleoprotein 48 kDa protein, U11-48K {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.16 E-value=2.6 Score=21.56 Aligned_cols=10 Identities=50% Similarity=1.148 Sum_probs=7.5
Q ss_pred cceeeeeeee
Q 035198 38 ANCRLRRIYF 47 (70)
Q Consensus 38 anCRirRiYF 47 (70)
|.||||++=+
T Consensus 24 asCrLRklgY 33 (35)
T d2vy4a1 24 ASCRLRKMGY 33 (35)
T ss_dssp HHHHHHHCSS
T ss_pred HHhhHhhccc
Confidence 6899988643
No 6
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Probab=23.11 E-value=17 Score=19.38 Aligned_cols=20 Identities=10% Similarity=0.409 Sum_probs=17.4
Q ss_pred eeeecccCCCCcCCccccee
Q 035198 44 RIYFSDRLYSEEELPPEFKL 63 (70)
Q Consensus 44 RiYFsdrlYs~~eLP~efkl 63 (70)
|+.|..+...+++.|.++.|
T Consensus 45 ~l~f~G~~l~~~~T~~~~~i 64 (79)
T d1euvb_ 45 RFLYDGIRIQADQTPEDLDM 64 (79)
T ss_dssp EEEETTEECCTTCCTTTTTC
T ss_pred EEEECCEEeCCCCCHHHCCC
Confidence 57789999999999999876
No 7
>d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.71 E-value=13 Score=22.96 Aligned_cols=48 Identities=27% Similarity=0.603 Sum_probs=31.0
Q ss_pred cccCcCcchhhc----cHHHHHHHH----------hCccee------------EEEEEEEecceeeeeeeecccC
Q 035198 3 LRLDDGWNQIQL----NLADFTRRA----------YGTNYV------------ETLRVQVHANCRLRRIYFSDRL 51 (70)
Q Consensus 3 l~L~~GWN~i~~----nL~d~t~~a----------ygT~yv------------et~rv~i~anCRirRiYFsdrl 51 (70)
+-|.+||=.|.. -|..+.++. .|..-+ |.++++||+|| +||+--.++|
T Consensus 51 lelTDGWYsi~a~lD~~L~~~l~~grl~vGqKL~i~GA~L~g~~~~~sPLE~~~s~~L~i~~Ns-tr~a~w~~kL 124 (133)
T d1iyjb3 51 IELTDGWYAVKAQLDPPLLALVKSGRLTVGQKIITQGAELVGSPDACAPLEAPDSLRLKISANS-TRPARWHSKL 124 (133)
T ss_dssp EEEECSSCEEEECCCHHHHHHHHHTCSCTTCEEEESCCEEESCCSCCCGGGCCSSCEEECCTTT-EEECCSSSCS
T ss_pred EEEecCCEEEEEEcCHHHHHHHHcCCccccceEEEECcEeecCCCCcCcccccCccEEEEeecc-eeeccccccC
Confidence 458899977654 355555552 233322 45889999998 6777666554
No 8
>d1oh4a_ b.18.1.18 (A:) Beta-mannosidase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.36 E-value=4.7 Score=26.53 Aligned_cols=43 Identities=19% Similarity=0.474 Sum_probs=23.2
Q ss_pred cccCcCcchh-----hccHHHHHHHHh-CcceeEE-EEEEEecceeeeee
Q 035198 3 LRLDDGWNQI-----QLNLADFTRRAY-GTNYVET-LRVQVHANCRLRRI 45 (70)
Q Consensus 3 l~L~~GWN~i-----~~nL~d~t~~ay-gT~yvet-~rv~i~anCRirRi 45 (70)
+.+.+||+|| .+||.|+..--. |-.|.+- ++|-+.++--+|-+
T Consensus 96 ~al~p~W~qi~~d~~~in~~dLe~v~~~gd~y~k~~V~id~d~~t~l~dl 145 (174)
T d1oh4a_ 96 AVLNPGWVKIGLDMNNANVESAEIITFGGKEYRRFHVRIEFDRTAGVKEL 145 (174)
T ss_dssp EEEETTTEEESTTSSCEETTSCEEEEETTEEEEEEEEEEECCCCTTCCEE
T ss_pred EEcCCChhhccCcccccchhhhhheeecCCceEEEEEEEecCCCCCcceE
Confidence 3578999998 678888744333 3333322 44443344333333
No 9
>d2e7ga1 d.52.7.1 (A:86-201) Ribosome-binding factor A, RbfA {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.86 E-value=30 Score=19.81 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.2
Q ss_pred eeEEEEEEEecceeeeeeeecc
Q 035198 28 YVETLRVQVHANCRLRRIYFSD 49 (70)
Q Consensus 28 yvet~rv~i~anCRirRiYFsd 49 (70)
.|+.++|.+.+.-+.-+|||+-
T Consensus 36 ~ItIt~V~vS~Dl~~AkVy~s~ 57 (116)
T d2e7ga1 36 NVELSKVSLTPDFSACRAYWKT 57 (116)
T ss_dssp TCCEEEEEECTTSCCEEEEECC
T ss_pred eEEEEEEEEcCCCcEEEEEEEe
Confidence 4889999999999999999975
No 10
>d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=19.18 E-value=25 Score=21.00 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=14.1
Q ss_pred EEEEecceeeeeeeec
Q 035198 33 RVQVHANCRLRRIYFS 48 (70)
Q Consensus 33 rv~i~anCRirRiYFs 48 (70)
-|+|++|.||-.+.|.
T Consensus 152 pi~I~~g~ri~Ql~F~ 167 (182)
T d1pkha_ 152 PVILYKNQRIGQLIFS 167 (182)
T ss_dssp CEEEETTCEEEEEEEE
T ss_pred CEEEcCCCEEEEEEEE
Confidence 3799999999999994
Done!