Query 035201
Match_columns 70
No_of_seqs 17 out of 19
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 16:30:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1te4_A Conserved protein MTH18 77.1 2 6.9E-05 24.9 2.7 25 10-34 76-100 (131)
2 1jdh_A Beta-catenin; beta-cate 60.5 10 0.00035 25.5 3.7 28 7-34 501-528 (529)
3 3ltj_A Alpharep-4; protein eng 58.9 5.8 0.0002 23.7 2.1 24 10-33 141-164 (201)
4 2qk1_A Protein STU2; STU2P, XM 57.0 11 0.00037 25.0 3.3 24 13-36 67-90 (249)
5 1jdh_A Beta-catenin; beta-cate 52.8 17 0.00059 24.4 3.8 27 9-35 462-488 (529)
6 3ltm_A Alpha-REP4; protein eng 51.5 19 0.00064 21.6 3.5 27 9-35 145-171 (211)
7 3kty_A Probable methyltransfer 49.5 9 0.00031 24.5 2.0 21 19-39 153-173 (173)
8 2qk2_A LP04448P; mini spindles 49.0 22 0.00075 22.2 3.7 28 9-36 58-86 (242)
9 1b3u_A Protein (protein phosph 48.9 11 0.00036 25.5 2.3 26 10-35 561-586 (588)
10 3ltj_A Alpharep-4; protein eng 48.9 22 0.00076 21.1 3.5 24 9-32 109-132 (201)
11 3ay5_A Cyclin-D1-binding prote 46.5 25 0.00086 25.7 4.2 39 7-51 168-206 (360)
12 1oyz_A Hypothetical protein YI 44.2 20 0.00067 22.5 2.9 26 9-34 161-186 (280)
13 4db6_A Armadillo repeat protei 43.7 33 0.0011 20.2 3.7 27 8-34 181-207 (210)
14 2z6h_A Catenin beta-1, beta-ca 42.3 26 0.00088 25.4 3.6 27 8-34 499-525 (644)
15 4ffb_C Protein STU2; tubulin f 38.7 35 0.0012 22.1 3.5 29 9-37 185-213 (278)
16 2z6g_A B-catenin; FULL-length, 36.9 35 0.0012 26.0 3.8 27 8-34 635-661 (780)
17 4hxt_A De novo protein OR329; 36.3 59 0.002 19.2 4.0 30 8-37 213-242 (252)
18 2ha8_A TAR (HIV-1) RNA loop bi 35.0 18 0.00061 23.5 1.7 26 20-45 157-182 (184)
19 1lq7_A Alpha3W; three helix bu 34.7 19 0.00064 22.2 1.6 11 30-40 26-36 (67)
20 3d34_A Spondin-2; cell adhesio 34.7 30 0.001 24.4 2.9 26 1-26 57-82 (223)
21 1b3u_A Protein (protein phosph 33.9 49 0.0017 22.3 3.7 27 10-36 167-193 (588)
22 2qk2_A LP04448P; mini spindles 33.1 76 0.0026 19.7 4.3 31 9-39 178-208 (242)
23 3vej_A Ubiquitin-like protein 32.8 30 0.001 19.4 2.2 13 29-41 28-40 (41)
24 2vgl_B AP-2 complex subunit be 32.7 40 0.0014 24.5 3.3 28 9-36 162-189 (591)
25 1otk_A Protein PAAC, phenylace 32.6 29 0.00099 24.8 2.6 38 6-43 103-146 (249)
26 2jdq_A Importin alpha-1 subuni 28.2 35 0.0012 22.2 2.2 27 8-34 415-441 (450)
27 4a01_A Proton pyrophosphatase; 28.0 40 0.0014 28.4 3.0 23 21-43 595-617 (766)
28 1yfb_A Transition state regula 25.9 25 0.00086 20.0 1.0 21 32-52 28-48 (59)
29 1w63_A Adapter-related protein 25.6 37 0.0013 25.0 2.2 26 10-35 182-207 (618)
30 3q9t_A Choline dehydrogenase a 25.2 22 0.00076 26.9 0.9 16 5-20 15-30 (577)
31 4hlb_A Uncharacterized protein 25.1 54 0.0019 21.8 2.7 30 21-50 67-96 (115)
32 2vgl_A Adaptor protein complex 24.7 88 0.003 23.4 4.1 28 9-36 189-216 (621)
33 2l66_A SSO7C4, transcriptional 23.7 28 0.00095 18.7 0.9 21 33-53 19-39 (53)
34 3t37_A Probable dehydrogenase; 22.8 27 0.00092 24.4 0.9 17 5-21 26-42 (526)
35 4av3_A K(+)-stimulated pyropho 22.8 23 0.00078 29.3 0.6 23 21-43 573-595 (735)
36 1wa5_B Importin alpha subunit; 22.5 91 0.0031 21.6 3.5 26 8-33 482-507 (530)
37 4db8_A Armadillo-repeat protei 22.2 1.2E+02 0.0041 18.2 3.7 27 8-34 97-123 (252)
38 1nh2_B Transcription initiatio 21.9 53 0.0018 18.6 1.9 14 29-42 32-45 (53)
39 1dow_B Beta-catenin; four-heli 20.6 22 0.00075 19.3 0.1 11 10-20 3-13 (32)
40 1nvp_B Transcription initiatio 20.5 54 0.0019 18.9 1.8 14 29-42 36-49 (57)
No 1
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=77.06 E-value=2 Score=24.93 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=14.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHH
Q 035201 10 GALQRLAKDSNPAIAAAASKTIFEL 34 (70)
Q Consensus 10 GALQRLAeDsnpaia~aAskai~El 34 (70)
.+|.++..|++|.|-.+|..++..+
T Consensus 76 ~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 76 EPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3444555566666666666666554
No 2
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=60.49 E-value=10 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.5
Q ss_pred cchHHHHHhhhcCCHHHHHHHHHHHHHH
Q 035201 7 AGMGALQRLAKDSNPAIAAAASKTIFEL 34 (70)
Q Consensus 7 AGMGALQRLAeDsnpaia~aAskai~El 34 (70)
-|+-.|++|..++|+.|...|..++..+
T Consensus 501 ~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 501 GATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp TCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 4678899999999999999999998754
No 3
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=58.94 E-value=5.8 Score=23.72 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=13.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHH
Q 035201 10 GALQRLAKDSNPAIAAAASKTIFE 33 (70)
Q Consensus 10 GALQRLAeDsnpaia~aAskai~E 33 (70)
.+|.++..|+++.|-.+|.+++..
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345555555566555555555544
No 4
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=56.99 E-value=11 Score=24.98 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.3
Q ss_pred HHhhhcCCHHHHHHHHHHHHHHHH
Q 035201 13 QRLAKDSNPAIAAAASKTIFELKK 36 (70)
Q Consensus 13 QRLAeDsnpaia~aAskai~Elkk 36 (70)
+.|+.|+|+.|..+|.++|..|-+
T Consensus 67 ~~l~~D~n~~v~~~A~~al~~la~ 90 (249)
T 2qk1_A 67 HIIQKDANIQAVALAAQSVELICD 90 (249)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHH
Confidence 455589999999999999998863
No 5
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=52.76 E-value=17 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=21.3
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 035201 9 MGALQRLAKDSNPAIAAAASKTIFELK 35 (70)
Q Consensus 9 MGALQRLAeDsnpaia~aAskai~Elk 35 (70)
+-.|.+|..|+++.|-..|.+++..|-
T Consensus 462 v~~l~~ll~~~~~~v~~~a~~~l~~l~ 488 (529)
T 1jdh_A 462 IPLFVQLLYSPIENIQRVAAGVLCELA 488 (529)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 345667788999999999999887763
No 6
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.49 E-value=19 Score=21.59 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=20.7
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 035201 9 MGALQRLAKDSNPAIAAAASKTIFELK 35 (70)
Q Consensus 9 MGALQRLAeDsnpaia~aAskai~Elk 35 (70)
+.+|.++..|++|.|-.+|.+++..+.
T Consensus 145 ~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 145 VEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 456777778888888888888877663
No 7
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=49.46 E-value=9 Score=24.46 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 035201 19 SNPAIAAAASKTIFELKKQWE 39 (70)
Q Consensus 19 snpaia~aAskai~Elkkqwe 39 (70)
.-.+++.||+=.++|+.+||.
T Consensus 153 ~SLNvs~AaaI~lye~~r~~~ 173 (173)
T 3kty_A 153 SSLNVAQALQLAAWELRYALL 173 (173)
T ss_dssp CCCCHHHHHHHHHHHHHHHHC
T ss_pred CeEeHHHHHHHHHHHHHHHhC
Confidence 346788899999999999993
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=48.98 E-value=22 Score=22.20 Aligned_cols=28 Identities=39% Similarity=0.482 Sum_probs=22.5
Q ss_pred hHHHHHhh-hcCCHHHHHHHHHHHHHHHH
Q 035201 9 MGALQRLA-KDSNPAIAAAASKTIFELKK 36 (70)
Q Consensus 9 MGALQRLA-eDsnpaia~aAskai~Elkk 36 (70)
+.+|.++- .|+|+.|..+|.++|..|-+
T Consensus 58 ~~~L~~~l~kd~~~~V~~~a~~~l~~la~ 86 (242)
T 2qk2_A 58 VSALKKVITKDSNVVLVAMAGKCLALLAK 86 (242)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 34566666 59999999999999998875
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=48.88 E-value=11 Score=25.54 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=18.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHH
Q 035201 10 GALQRLAKDSNPAIAAAASKTIFELK 35 (70)
Q Consensus 10 GALQRLAeDsnpaia~aAskai~Elk 35 (70)
..|++|.+|+++.|-.+|.+|+..+.
T Consensus 561 p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 561 PILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 45677777777777777777776553
No 10
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=48.86 E-value=22 Score=21.10 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=13.6
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHH
Q 035201 9 MGALQRLAKDSNPAIAAAASKTIF 32 (70)
Q Consensus 9 MGALQRLAeDsnpaia~aAskai~ 32 (70)
...|.++..|++|.|-.+|.+++.
T Consensus 109 ~~~L~~~l~d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 109 VEPLIKALKDEDWFVRIAAAFALG 132 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345555556666666665555543
No 11
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=46.45 E-value=25 Score=25.73 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=19.9
Q ss_pred cchHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhCCceeEecc
Q 035201 7 AGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMN 51 (70)
Q Consensus 7 AGMGALQRLAeDsnpaia~aAskai~Elkkqwe~eegds~rf~m~ 51 (70)
-+.+|+.|.-.. +..----||.||+ +|- +++|......+
T Consensus 168 ~N~~av~~~~~~----~~~lvkDaleEl~-E~~-e~~D~~~~~~~ 206 (360)
T 3ay5_A 168 DNKAAALLMLTK----NVDFVKDAHEEME-QAV-EESDPYSGLLN 206 (360)
T ss_dssp SHHHHHHHHHHH----HHHHHHHHHHHHH-HHH-HHSCC------
T ss_pred hhHHHHHHHHHH----HHHHHHHHHHHHH-HHH-hcCCccccccc
Confidence 346666665532 4445556888886 565 45776654433
No 12
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=44.19 E-value=20 Score=22.52 Aligned_cols=26 Identities=27% Similarity=0.126 Sum_probs=15.6
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHH
Q 035201 9 MGALQRLAKDSNPAIAAAASKTIFEL 34 (70)
Q Consensus 9 MGALQRLAeDsnpaia~aAskai~El 34 (70)
+.+|.++..|+++.|-.+|..+|..+
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 34555566666666666666666554
No 13
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=43.68 E-value=33 Score=20.24 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=22.9
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHHH
Q 035201 8 GMGALQRLAKDSNPAIAAAASKTIFEL 34 (70)
Q Consensus 8 GMGALQRLAeDsnpaia~aAskai~El 34 (70)
++..|.+|..++++.+...|..+|..|
T Consensus 181 ~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 181 ALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 466788888999999999999998766
No 14
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=42.25 E-value=26 Score=25.37 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=22.7
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHHH
Q 035201 8 GMGALQRLAKDSNPAIAAAASKTIFEL 34 (70)
Q Consensus 8 GMGALQRLAeDsnpaia~aAskai~El 34 (70)
|+..|++|..+.|+.|..+|++||..|
T Consensus 499 ~l~~L~~ll~~~~~~vr~~A~~aL~~l 525 (644)
T 2z6h_A 499 ATAPLTELLHSRNEGVATYAAAVLFRM 525 (644)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 577899999999999998888887544
No 15
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=38.69 E-value=35 Score=22.05 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=24.7
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHHHHH
Q 035201 9 MGALQRLAKDSNPAIAAAASKTIFELKKQ 37 (70)
Q Consensus 9 MGALQRLAeDsnpaia~aAskai~Elkkq 37 (70)
|-+|..+-+|+|+.|=.+|.+.|.++.+.
T Consensus 185 ~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 185 LKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp GGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 34677788999999999999999999863
No 16
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=36.95 E-value=35 Score=26.03 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=22.8
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHHH
Q 035201 8 GMGALQRLAKDSNPAIAAAASKTIFEL 34 (70)
Q Consensus 8 GMGALQRLAeDsnpaia~aAskai~El 34 (70)
|+..|.+|..+.|+.|...|..|+..+
T Consensus 635 ~i~~L~~Ll~~~~~~Vr~~A~~aL~~l 661 (780)
T 2z6g_A 635 ATAPLTELLHSRNEGVATYAAAVLFRM 661 (780)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 678899999999999988888877544
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=36.29 E-value=59 Score=19.18 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=25.5
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHHHHHH
Q 035201 8 GMGALQRLAKDSNPAIAAAASKTIFELKKQ 37 (70)
Q Consensus 8 GMGALQRLAeDsnpaia~aAskai~Elkkq 37 (70)
++..|.++.+++++.+...|..+|..|-..
T Consensus 213 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 213 GVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 567888899999999999999999888653
No 18
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=35.00 E-value=18 Score=23.48 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCc
Q 035201 20 NPAIAAAASKTIFELKKQWEIEEGDS 45 (70)
Q Consensus 20 npaia~aAskai~Elkkqwe~eegds 45 (70)
-++||.|++=.++|+.+|.....||+
T Consensus 157 SLNvavAaaI~lye~~rq~~~~~~~~ 182 (184)
T 2ha8_A 157 SLNVHVSGALLIWEYTRQQLLSHGDT 182 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTC----
T ss_pred cchHHHHHHHHHHHHHHHhhcccCCC
Confidence 36788888899999999987766654
No 19
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=34.74 E-value=19 Score=22.21 Aligned_cols=11 Identities=64% Similarity=0.924 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q 035201 30 TIFELKKQWEI 40 (70)
Q Consensus 30 ai~Elkkqwe~ 40 (70)
-|.|||+.|+.
T Consensus 26 rieelkkkwee 36 (67)
T 1lq7_A 26 RIEELKKKWEE 36 (67)
T ss_dssp SHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 47899999974
No 20
>3d34_A Spondin-2; cell adhesion, extracellular matrix, immune response, polymorphism, secreted, immune system; 1.80A {Homo sapiens}
Probab=34.66 E-value=30 Score=24.37 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.6
Q ss_pred CccccccchHHHHHhhhcCCHHHHHH
Q 035201 1 MWTLGNAGMGALQRLAKDSNPAIAAA 26 (70)
Q Consensus 1 mWTLGNAGMGALQRLAeDsnpaia~a 26 (70)
||.+|-.--.+|++|||+-++..-.+
T Consensus 57 lf~~G~~AS~gLe~lAE~G~~~~L~~ 82 (223)
T 3d34_A 57 MWRKNQYVSNGLRDFAERGEAWALMK 82 (223)
T ss_dssp SCCTTSCCCHHHHHHHHHCCCHHHHH
T ss_pred ccccCCcccHHHHHHhccCCHHHHHH
Confidence 68999888999999999998654443
No 21
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=33.89 E-value=49 Score=22.30 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=22.1
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 035201 10 GALQRLAKDSNPAIAAAASKTIFELKK 36 (70)
Q Consensus 10 GALQRLAeDsnpaia~aAskai~Elkk 36 (70)
..|..+..|++|.|-.+|.+++..+-+
T Consensus 167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~ 193 (588)
T 1b3u_A 167 QYFRNLCSDDTPMVRRAAASKLGEFAK 193 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 345677889999999999999988743
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=33.12 E-value=76 Score=19.68 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=26.5
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHHHHHHH
Q 035201 9 MGALQRLAKDSNPAIAAAASKTIFELKKQWE 39 (70)
Q Consensus 9 MGALQRLAeDsnpaia~aAskai~Elkkqwe 39 (70)
|-.|..+.+|+++.|-.+|.++|-.+-+...
T Consensus 178 ~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 178 TTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 4467778899999999999999999988774
No 23
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=32.84 E-value=30 Score=19.44 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHH
Q 035201 29 KTIFELKKQWEIE 41 (70)
Q Consensus 29 kai~Elkkqwe~e 41 (70)
.++..|||-|++.
T Consensus 28 ~~L~RLqkGWela 40 (41)
T 3vej_A 28 QVMERLQKGWSLA 40 (41)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHhccccc
Confidence 7899999999974
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=32.66 E-value=40 Score=24.48 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=23.8
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 035201 9 MGALQRLAKDSNPAIAAAASKTIFELKK 36 (70)
Q Consensus 9 MGALQRLAeDsnpaia~aAskai~Elkk 36 (70)
+..|+.|-.|++|.|..+|..+|.++.+
T Consensus 162 ~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 162 LDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 4577888889999999999999998754
No 25
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A
Probab=32.64 E-value=29 Score=24.75 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=29.6
Q ss_pred ccchHHHHHhhhcCCHHHHHHHHHHHHHHH------HHHHHHhC
Q 035201 6 NAGMGALQRLAKDSNPAIAAAASKTIFELK------KQWEIEEG 43 (70)
Q Consensus 6 NAGMGALQRLAeDsnpaia~aAskai~Elk------kqwe~eeg 43 (70)
-+..--+++|..-|.+.+|++|.|++.|.. .+|-+.=|
T Consensus 103 ~~~~~~~~~L~~ss~~plA~ia~K~~kEe~yH~~h~~~w~~rL~ 146 (249)
T 1otk_A 103 AWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLG 146 (249)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566889999999999999999999975 35555444
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=28.22 E-value=35 Score=22.24 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.0
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHHH
Q 035201 8 GMGALQRLAKDSNPAIAAAASKTIFEL 34 (70)
Q Consensus 8 GMGALQRLAeDsnpaia~aAskai~El 34 (70)
|+-.|++|..++|+.|...|..+|..+
T Consensus 415 ~~~~l~~l~~~~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 415 GLDKIEFLQSHENQEIYQKAFDLIEHY 441 (450)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 577889999999999988888777644
No 27
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=28.04 E-value=40 Score=28.42 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 035201 21 PAIAAAASKTIFELKKQWEIEEG 43 (70)
Q Consensus 21 paia~aAskai~Elkkqwe~eeg 43 (70)
-+|-+||.+.++|.|+|.+.-+|
T Consensus 595 ~AVg~AA~~mV~EVRRQFreipG 617 (766)
T 4a01_A 595 KSVGSAALKMVEEVRRQFNTIPG 617 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Confidence 47889999999999999998877
No 28
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=25.90 E-value=25 Score=19.96 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCceeEeccC
Q 035201 32 FELKKQWEIEEGDSWRFMMNP 52 (70)
Q Consensus 32 ~Elkkqwe~eegds~rf~m~~ 52 (70)
.|++++-.+++||.+.|..+.
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 367888899999999987753
No 29
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=25.60 E-value=37 Score=25.02 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=21.8
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHH
Q 035201 10 GALQRLAKDSNPAIAAAASKTIFELK 35 (70)
Q Consensus 10 GALQRLAeDsnpaia~aAskai~Elk 35 (70)
..|+.|-.|+||.|..+|..++.++.
T Consensus 182 ~~l~~lL~D~d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 182 PATKNLLNEKNHGVLHTSVVLLTEMC 207 (618)
T ss_dssp GGTTTSTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHhHHHHHHHHHHHHH
Confidence 34677788999999999999998875
No 30
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=25.15 E-value=22 Score=26.91 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=14.1
Q ss_pred cccchHHHHHhhhcCC
Q 035201 5 GNAGMGALQRLAKDSN 20 (70)
Q Consensus 5 GNAGMGALQRLAeDsn 20 (70)
|.||+-++-||||+.+
T Consensus 15 G~AG~v~A~rLse~~~ 30 (577)
T 3q9t_A 15 GTAGNTVAGRLAENPN 30 (577)
T ss_dssp SHHHHHHHHHHTTSTT
T ss_pred cHHHHHHHHHHHhCCC
Confidence 7899999999999864
No 31
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=25.09 E-value=54 Score=21.78 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceeEec
Q 035201 21 PAIAAAASKTIFELKKQWEIEEGDSWRFMM 50 (70)
Q Consensus 21 paia~aAskai~Elkkqwe~eegds~rf~m 50 (70)
....+-||+.|.|||.++-....-...-++
T Consensus 67 aefsaiasrsirelkerfgfdkdvpigavl 96 (115)
T 4hlb_A 67 AEFSAIASRSIRELKERFGFDKDVPIGAVL 96 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCccceeE
Confidence 356778999999999987654433333333
No 32
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=24.68 E-value=88 Score=23.41 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.6
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 035201 9 MGALQRLAKDSNPAIAAAASKTIFELKK 36 (70)
Q Consensus 9 MGALQRLAeDsnpaia~aAskai~Elkk 36 (70)
+.-|++|-.|+||.|..+|..+|.|+.+
T Consensus 189 ~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 189 TSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 5678888899999999999999999865
No 33
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=23.68 E-value=28 Score=18.68 Aligned_cols=21 Identities=19% Similarity=0.556 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCceeEeccCC
Q 035201 33 ELKKQWEIEEGDSWRFMMNPK 53 (70)
Q Consensus 33 Elkkqwe~eegds~rf~m~~~ 53 (70)
++.++-.+++||.+.|..+..
T Consensus 19 ~ir~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 19 KVRQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHHHSCCCTTCEEEEEECSS
T ss_pred HHHHHcCcCCCCEEEEEEECC
Confidence 677888899999999987543
No 34
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=22.84 E-value=27 Score=24.40 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=13.6
Q ss_pred cccchHHHHHhhhcCCH
Q 035201 5 GNAGMGALQRLAKDSNP 21 (70)
Q Consensus 5 GNAGMGALQRLAeDsnp 21 (70)
|-||.-.+.|||||.+.
T Consensus 26 G~aG~v~A~rLse~~~~ 42 (526)
T 3t37_A 26 GSAGSLLAARLSEDPDS 42 (526)
T ss_dssp SHHHHHHHHHHTTSTTS
T ss_pred cHHHHHHHHHHHhCCCC
Confidence 66888888999997654
No 35
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=22.76 E-value=23 Score=29.35 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 035201 21 PAIAAAASKTIFELKKQWEIEEG 43 (70)
Q Consensus 21 paia~aAskai~Elkkqwe~eeg 43 (70)
-+|-+||.+.++|.|+|.+.-+|
T Consensus 573 ~AVgrAA~~mV~EVRRQFreipG 595 (735)
T 4av3_A 573 SAVTKAAMKMVDEIRRQAREIPG 595 (735)
T ss_dssp HHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCC
Confidence 37889999999999999998777
No 36
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=22.53 E-value=91 Score=21.58 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=21.4
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHH
Q 035201 8 GMGALQRLAKDSNPAIAAAASKTIFE 33 (70)
Q Consensus 8 GMGALQRLAeDsnpaia~aAskai~E 33 (70)
|+-.|+.|..++|+.|...|..+|..
T Consensus 482 ~~~~L~~L~~~~~~~v~~~a~~il~~ 507 (530)
T 1wa5_B 482 GMEKIFNCQQNENDKIYEKAYKIIET 507 (530)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 67889999999999998877766653
No 37
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=22.24 E-value=1.2e+02 Score=18.20 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=22.8
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHHH
Q 035201 8 GMGALQRLAKDSNPAIAAAASKTIFEL 34 (70)
Q Consensus 8 GMGALQRLAeDsnpaia~aAskai~El 34 (70)
|+..|-+|-.++++.+-..|..+|..|
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l 123 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNI 123 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 566777888899999999999998776
No 38
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=21.91 E-value=53 Score=18.60 Aligned_cols=14 Identities=29% Similarity=0.601 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHh
Q 035201 29 KTIFELKKQWEIEE 42 (70)
Q Consensus 29 kai~Elkkqwe~ee 42 (70)
..+.|||+-|+..-
T Consensus 32 ~vL~eLk~~We~KL 45 (53)
T 1nh2_B 32 QTLQDLKNIWQKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999999753
No 39
>1dow_B Beta-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus}
Probab=20.56 E-value=22 Score=19.34 Aligned_cols=11 Identities=45% Similarity=0.534 Sum_probs=8.5
Q ss_pred HHHHHhhhcCC
Q 035201 10 GALQRLAKDSN 20 (70)
Q Consensus 10 GALQRLAeDsn 20 (70)
...|||||-|-
T Consensus 3 t~vqrLaePsq 13 (32)
T 1dow_B 3 TNVQRLAEPSQ 13 (32)
T ss_dssp CHHHHHHHHHH
T ss_pred cchhhccCHHH
Confidence 46899999764
No 40
>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1
Probab=20.47 E-value=54 Score=18.85 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHh
Q 035201 29 KTIFELKKQWEIEE 42 (70)
Q Consensus 29 kai~Elkkqwe~ee 42 (70)
..|.|||+-|+..-
T Consensus 36 ~vL~eLk~~We~KL 49 (57)
T 1nvp_B 36 QVLMELKTLWENKL 49 (57)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999999754
Done!