BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035202
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VBW|A Chain A, Crystal Structure Of Bitter Gourd Trypsin Inhibitor
Length = 68
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 46/68 (67%)
Query: 3 SECRGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGT 62
S C+GKSSWP+L+G+ G A A +E +NP V A I+ GS T DF C RVRVWV RG
Sbjct: 1 SRCQGKSSWPQLVGSTGAAAKAVIERENPRVRAVIIKVGSGATKDFRCDRVRVWVTERGI 60
Query: 63 VTRVPTIG 70
V R PTIG
Sbjct: 61 VARPPTIG 68
>pdb|1MIT|A Chain A, Recombinant Cucurbita Maxima Trypsin Inhibitor V
(Rcmti-V) (Nmr, Minimized Average Structure)
Length = 69
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 43/69 (62%)
Query: 2 ASECRGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRG 61
S C GKSSWP L+G G A A +E NP V A I+ EG+ VT DF C RVR+WVN RG
Sbjct: 1 GSSCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRG 60
Query: 62 TVTRVPTIG 70
V P IG
Sbjct: 61 LVVSPPRIG 69
>pdb|1TIN|A Chain A, Three-Dimensional Structure In Solution Of Cucurbita
Maxima Trypsin Inhibitor-V Determined By Nmr
Spectroscopy
Length = 69
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 43/68 (63%)
Query: 3 SECRGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGT 62
S C GKSSWP L+G G A A +E NP V A I+ EG+ VT DF C RVR+WVN RG
Sbjct: 2 SSCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGL 61
Query: 63 VTRVPTIG 70
V P IG
Sbjct: 62 VVSPPRIG 69
>pdb|1DWM|A Chain A, Solution Structure Of Linum Usitatissinum Trypsin
Inhibitor (Luti)
Length = 70
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%)
Query: 2 ASECRGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRG 61
+ C GK++WPEL+G G AAATVE +N V+A ++ EGS +T DF C RV V VN G
Sbjct: 2 SRRCPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHG 61
Query: 62 TVTRVPTI 69
VT VP I
Sbjct: 62 VVTSVPHI 69
>pdb|3RDY|A Chain A, Crystal Structure Of Buckwheat Trypsin Inhibitor Rbti At
1.84 Angstrom Resolution
pdb|3RDZ|C Chain C, Crystal Structure Of Rbti-Trypsin Complex At 2.26
Angstrom Resolution
pdb|3RDZ|D Chain D, Crystal Structure Of Rbti-Trypsin Complex At 2.26
Angstrom Resolution
Length = 79
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 4 ECRGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTV 63
+C GK WPEL+G +G +AA +E++N V A ++ EGS V D C RV V+V+ RG V
Sbjct: 13 QCSGKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVV 72
Query: 64 TRVPTI 69
P +
Sbjct: 73 VDTPVV 78
>pdb|1TM4|I Chain I, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
Length = 64
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VTG++ RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTGEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1TM5|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
Length = 64
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT ++ RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTAEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1TM3|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TO2|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
Length = 64
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT ++ RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1LW6|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
Length = 64
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT ++ RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y3C|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
Length = 64
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT ++ RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYAIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1TM7|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
Length = 64
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT ++ RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTYEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1TM1|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
Length = 64
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT ++ RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1HYM|A Chain A, Hydrolyzed Trypsin Inhibitor (Cmti-V, Minimized Average
Nmr Structure)
Length = 45
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 3 SECRGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVT 45
S C GKSSWP L+G G A A +E NP V A I+ EG+ VT
Sbjct: 2 SSCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVT 44
>pdb|3CI2|A Chain A, Refinement Of The Three-Dimensional Solution Structure
Of Barley Serine Proteinase Inhibitor 2 And Comparison
With The Structures In Crystals
Length = 66
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT ++ RVR++V+ + +VP
Sbjct: 4 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 63
Query: 68 TIG 70
+G
Sbjct: 64 RVG 66
>pdb|1COA|I Chain I, The Effect Of Cavity Creating Mutations In The
Hydrophobic Core Of Chymotrypsin Inhibitor 2
Length = 64
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT ++ RVR++V+ V VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNVAEVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1TMG|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
Length = 64
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT ++ RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTFEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|2CI2|I Chain I, Crystal And Molecular Structure Of The Serine Proteinase
Inhibitor Ci-2 From Barley Seeds
pdb|2SNI|I Chain I, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 83
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT ++ RVR++V+ + VP
Sbjct: 21 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAEVP 80
Query: 68 TIG 70
+G
Sbjct: 81 RVG 83
>pdb|1Y4A|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 64
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT + RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTRSYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y3B|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
Length = 64
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT + RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMSYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y34|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
Length = 64
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT + RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMAYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y3F|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
Length = 64
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT ++ RVR+ V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLAVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y1K|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
Length = 64
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ V ++ RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVAMEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1YPC|I Chain I, Direct Observation Of Better Hydration At The N-Terminus
Of An Alpha-Helix With Glycine Rather Than Alanine As
N-Cap
Length = 64
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G A + D P ++ G+ VT ++ RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y33|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
Length = 64
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ V ++ RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVPMEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1YPA|I Chain I, Direct Observation Of Better Hydration At The N-Terminus
Of An Alpha-Helix With Glycine Rather Than Alanine As
N-Cap
Length = 64
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G A + D P ++ G+ VT ++ RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKAVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1TO1|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
Length = 64
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT + RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEARIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1YPB|I Chain I, Direct Observation Of Better Hydration At The N-Terminus
Of An Alpha-Helix With Glycine Rather Than Alanine As
N-Cap
Length = 64
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G A + D P ++ G+ VT ++ RVR++V+ + +VP
Sbjct: 2 KTEWPELVGKGVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y3D|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
Length = 64
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT ++ RV ++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVALFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y48|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
Length = 64
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVP 67
K+ WPEL+G EA + D P ++ G+ VT ++ VR++V+ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDAVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1CIS|A Chain A, Context Dependence Of Protein Secondary Structure
Formation. The Three-Dimensional Structure And
Stability Of A Hybrid Between Chymotrypsin Inhibitor 2
And Helix E From Subtilisin Carlsberg
Length = 66
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQ-IVLEGSFVT---GDFLCTRVRVWVNTRGTV 63
K+ WPEL+G EA + D P AQ IVLE V ++ RVR+ V+ +
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKP--EAQIIVLEKQAVDNAYAEYRIDRVRLAVDKLDNI 59
Query: 64 TRVPTIG 70
+VP +G
Sbjct: 60 AQVPRVG 66
>pdb|1SBN|I Chain I, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
Length = 70
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 9 SSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNT-RGTVTRVP 67
S+PE++G +A P N + EGS VT D RVRV+ N V VP
Sbjct: 8 KSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTRDLRYNRVRVFYNPGTNVVNHVP 67
Query: 68 TIG 70
+G
Sbjct: 68 HVG 70
>pdb|1MEE|I Chain I, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 64
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 9 SSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNT-RGTVTRVP 67
S+PE++G +A P N + EGS VT D RVRV+ N V VP
Sbjct: 2 KSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVP 61
Query: 68 TIG 70
+G
Sbjct: 62 HVG 64
>pdb|4H4F|B Chain B, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound
To Inhibitor Eglin C From Hirudo Medicinalis
Length = 70
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 1 MASECRGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNT- 59
M SE + S+PE++G +A P + + EGS VT D RVRV+ N
Sbjct: 3 MGSELK---SFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTLDLRYNRVRVFYNPG 59
Query: 60 RGTVTRVPTIG 70
V VP +G
Sbjct: 60 TNVVNHVPHVG 70
>pdb|1CSE|I Chain I, The High-Resolution X-Ray Crystal Structure Of The
Complex Formed Between Subtilisin Carlsberg And Eglin
C, An Elastase Inhibitor From The Leech Hirudo
Medicinalis. Structural Analysis, Subtilisin Structure
And Interface Geometry
pdb|2SEC|I Chain I, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 70
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 9 SSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNT-RGTVTRVP 67
S+PE++G +A P N + EGS VT D RVRV+ N V VP
Sbjct: 8 KSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVP 67
Query: 68 TIG 70
+G
Sbjct: 68 HVG 70
>pdb|1HYM|B Chain B, Hydrolyzed Trypsin Inhibitor (Cmti-V, Minimized Average
Nmr Structure)
Length = 24
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 47 DFLCTRVRVWVNTRGTVTRVPTIG 70
DF C RVR+WVN RG V P IG
Sbjct: 1 DFRCNRVRIWVNKRGLVVSPPRIG 24
>pdb|4B2A|B Chain B, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala (Tga) In Complex With Eglin C
pdb|4B2A|D Chain D, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala (Tga) In Complex With Eglin C
Length = 66
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 9 SSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNT-RGTVTRVP 67
S+PE++G +A P + + EGS VT D RVRV+ N V VP
Sbjct: 4 KSFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTKDLRYNRVRVFYNPGTNVVNHVP 63
Query: 68 TIG 70
+G
Sbjct: 64 HVG 66
>pdb|4B1T|B Chain B, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala ( Ta) In Complex With Eglin C
pdb|4B1T|D Chain D, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala ( Ta) In Complex With Eglin C
Length = 70
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 9 SSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNT-RGTVTRVP 67
S+PE++G +A P + + EGS VT D RVRV+ N V VP
Sbjct: 8 KSFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTKDLRYNRVRVFYNPGTNVVNHVP 67
Query: 68 TIG 70
+G
Sbjct: 68 HVG 70
>pdb|4B2B|B Chain B, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala (Tgpa) In Complex With Eglin C
pdb|4B2B|D Chain D, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala (Tgpa) In Complex With Eglin C
pdb|4B2C|B Chain B, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala (Tpa) In Complex With Eglin C
pdb|4B2C|D Chain D, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala (Tpa) In Complex With Eglin C
Length = 71
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 9 SSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNT-RGTVTRVP 67
S+PE++G +A P + + EGS VT D RVRV+ N V VP
Sbjct: 9 KSFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTKDLRYNRVRVFYNPGTNVVNHVP 68
Query: 68 TIG 70
+G
Sbjct: 69 HVG 71
>pdb|1TEC|I Chain I, Crystallographic Refinement By Incorporation Of
Molecular Dynamics. The Thermostable Serine Protease
Thermitase Complexed With Eglin-C
pdb|2TEC|I Chain I, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|I Chain I, Calcium Binding To Thermitase. Crystallographic Studies
Of Thermitase At 0, 5 And 100 Mm Calcium
pdb|1ACB|I Chain I, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1EGL|A Chain A, The Solution Structure Of Eglin C Based On Measurements
Of Many Noes And Coupling Constants And Its Comparison
With X- Ray Structures
Length = 70
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 9 SSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNT-RGTVTRVP 67
S+PE++G +A P + + EGS VT D RVRV+ N V VP
Sbjct: 8 KSFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVP 67
Query: 68 TIG 70
+G
Sbjct: 68 HVG 70
>pdb|1SIB|I Chain I, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
Length = 70
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 9 SSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNT-RGTVTRVP 67
S+PE++G +A P + + EGS VT D RV+V+ N V VP
Sbjct: 8 KSFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTLDLRYNRVKVFYNPGTNVVNHVP 67
Query: 68 TIG 70
+G
Sbjct: 68 HVG 70
>pdb|1CIQ|A Chain A, Complex Of Two Fragments Of Ci2, Residues 1-40 And 41-64
Length = 40
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVL 39
K+ WPEL+G EA + D P AQI++
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKP--EAQIIV 31
>pdb|1CIR|A Chain A, Complex Of Two Fragments Of Ci2 [(1-40)(Dot)(41-64)]
Length = 40
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVL 39
K+ WPEL+G EA + D P AQI++
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKP--EAQIIV 31
>pdb|1CQ4|A Chain A, Ci2 Mutant With Tetraglutamine (mgqqqqgm) Replacing
Met59
Length = 47
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 8 KSSWPELLGAQGVEAAATVESDNPLVNAQIVL 39
K+ WPEL+G EA + D P AQI++
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKP--EAQIIV 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,947,774
Number of Sequences: 62578
Number of extensions: 58467
Number of successful extensions: 126
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 43
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)