Query 035202
Match_columns 70
No_of_seqs 111 out of 320
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:31:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mit_A RCMTI-V, trypsin inhibi 100.0 2.3E-38 7.9E-43 183.9 7.7 68 3-70 2-69 (69)
2 1vbw_A Trypsin inhibitor BGIT; 100.0 2.9E-38 9.9E-43 183.0 7.1 68 3-70 1-68 (68)
3 1dwm_A LUTI, linum usitatissin 100.0 1.5E-37 5.2E-42 180.6 7.6 69 2-70 2-70 (70)
4 3rdy_A BWI-1=protease inhibito 100.0 6.4E-36 2.2E-40 177.9 7.2 67 3-69 12-78 (79)
5 1to2_I Chymotrypsin inhibitor 100.0 6.8E-36 2.3E-40 171.3 6.2 64 7-70 1-64 (64)
6 2ci2_I Chymotrypsin inhibitor 100.0 3.6E-35 1.2E-39 175.7 6.8 66 5-70 18-83 (83)
7 1cse_I Eglin C; complex(serine 100.0 3E-35 1E-39 171.2 6.0 65 6-70 5-70 (70)
8 1cq4_A Protein (serine protein 99.9 1.8E-26 6.1E-31 125.4 4.5 47 7-53 1-47 (47)
9 1hym_A CMTI-V, hydrolyzed cucu 99.9 1.4E-22 4.8E-27 109.2 5.2 44 2-46 2-45 (45)
10 1hym_B CMTI-V, hydrolyzed cucu 99.4 2.6E-13 8.9E-18 65.4 2.7 24 47-70 1-24 (26)
11 3ouv_A Serine/threonine protei 80.2 0.99 3.4E-05 24.3 1.9 21 9-29 8-28 (71)
12 2kuf_A PKNB, serine/threonine- 72.6 5.6 0.00019 23.7 4.1 22 8-29 7-28 (139)
13 2kue_A PKNB, serine/threonine- 54.8 6.7 0.00023 23.5 1.9 22 9-30 76-97 (138)
14 2kui_A PKNB, serine/threonine- 50.3 39 0.0013 22.4 5.4 57 9-67 9-79 (275)
15 2yh9_A Small protein A, BAME p 48.0 21 0.0007 20.0 3.2 19 48-66 53-71 (88)
16 2kud_A PKNB, serine/threonine- 46.9 11 0.00036 22.5 1.9 21 9-29 9-29 (140)
17 3ge3_E Toluene-4-monooxygenase 44.5 25 0.00085 20.9 3.3 24 23-46 28-51 (103)
18 1u07_A TONB protein; beta-hair 42.3 20 0.0007 19.7 2.5 15 52-66 28-42 (90)
19 2km7_A Small protein A; BAME, 35.5 28 0.00097 20.0 2.5 18 49-66 68-85 (102)
20 3py9_A Protein kinase; pasta, 34.8 19 0.00064 24.4 1.8 22 8-29 6-27 (294)
21 2oqc_A Penicillin V acylase; N 34.5 32 0.0011 23.5 3.0 52 17-68 112-176 (327)
22 3db7_A Putative calcium-regula 34.1 75 0.0026 18.9 4.8 44 22-66 81-125 (127)
23 3uv9_A TRIM5alpha, tripartite 33.9 29 0.001 21.9 2.6 21 44-64 122-143 (186)
24 4a7k_A Aldos-2-ulose dehydrata 32.2 38 0.0013 27.3 3.3 37 32-68 469-511 (900)
25 2k9k_A TONB2; metal transport; 31.8 27 0.00093 19.7 2.0 15 52-66 43-57 (106)
26 3pjy_A Hypothetical signal pep 28.2 32 0.0011 21.1 1.9 13 54-66 72-84 (136)
27 3m7a_A Uncharacterized protein 28.1 32 0.0011 21.3 1.9 13 54-66 86-98 (140)
28 1lr0_A TOLA protein; domain-sw 26.8 48 0.0016 19.9 2.5 17 51-67 54-70 (129)
29 2bjf_A Choloylglycine hydrolas 26.4 54 0.0018 22.4 3.0 52 17-68 114-178 (329)
30 3djc_A Type III pantothenate k 26.2 46 0.0016 22.3 2.6 39 10-48 102-140 (266)
31 2vok_A 52 kDa RO protein; poly 24.4 43 0.0015 21.3 2.1 18 47-64 122-140 (188)
32 3kb5_A Tripartite motif-contai 23.5 45 0.0016 21.1 2.1 18 47-64 130-148 (193)
33 2wl1_A Pyrin, marenostrin; amy 23.3 46 0.0016 21.1 2.1 18 47-64 127-145 (191)
34 2jo6_A Nitrite reductase [NAD( 23.2 42 0.0014 19.0 1.7 22 40-61 18-39 (113)
35 1vm9_A Toluene-4-monooxygenase 22.4 76 0.0026 17.8 2.8 27 39-65 12-39 (111)
36 3oam_A 3-deoxy-manno-octuloson 21.5 71 0.0024 20.4 2.7 18 48-65 137-154 (252)
37 2grx_C Protein TONB; beta barr 20.9 45 0.0015 22.3 1.7 15 52-66 167-181 (229)
38 2fbe_A Predicted: similar to R 20.7 71 0.0024 20.5 2.6 19 46-64 123-142 (201)
39 2inp_L Phenol hydroxylase comp 20.6 65 0.0022 18.5 2.2 14 22-35 18-31 (89)
40 3elg_A Uncharacterized peripla 20.5 1.4E+02 0.0049 17.5 4.7 43 23-66 83-126 (128)
41 3c3d_A 2-phospho-L-lactate tra 20.1 74 0.0025 22.2 2.7 23 19-45 174-196 (311)
42 1qme_A Penicillin-binding prot 20.1 91 0.0031 23.3 3.4 22 8-29 645-666 (702)
No 1
>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A
Probab=100.00 E-value=2.3e-38 Score=183.87 Aligned_cols=68 Identities=56% Similarity=0.947 Sum_probs=66.8
Q ss_pred CCCCCCCCCccccCcchHHHHHHHHhhCCCCcEEEeeCCCccccCCCCCeeEEEECCCCcEEEcCccC
Q 035202 3 SECRGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVPTIG 70 (70)
Q Consensus 3 ~~c~~k~~WpelVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vT~Df~~~RV~v~vD~~g~V~~vP~vG 70 (70)
+.|++|++||||||+++++|+.+|++|+|++.+++|++|+++||||||||||||+|++|+|+++|+||
T Consensus 2 ~~c~~K~sWpELVG~~~~~A~~~I~~d~p~v~v~vl~~g~~vT~Dfr~~RV~V~vD~~g~V~~vP~vG 69 (69)
T 1mit_A 2 SSCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG 69 (69)
T ss_dssp CCCSSCSCCCCCTTSHHHHHHHHHHHHCTTSEEEEEETTCCCCSSCCTTEEEEEEETTTEEECCSSCC
T ss_pred CCCCCcCcCHHHcCccHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEeCCcCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999998
No 2
>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia}
Probab=100.00 E-value=2.9e-38 Score=183.03 Aligned_cols=68 Identities=57% Similarity=0.992 Sum_probs=66.5
Q ss_pred CCCCCCCCCccccCcchHHHHHHHHhhCCCCcEEEeeCCCccccCCCCCeeEEEECCCCcEEEcCccC
Q 035202 3 SECRGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVPTIG 70 (70)
Q Consensus 3 ~~c~~k~~WpelVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vT~Df~~~RV~v~vD~~g~V~~vP~vG 70 (70)
+.|++|+|||||||+++++|+.+|++|+|++.+++|++|+++||||||||||||+|++|+|+++|+||
T Consensus 1 ~~c~~K~sWpELVG~~~~~A~~~I~~d~p~~~v~vl~~g~~vT~Df~~~RV~v~vD~~g~V~~vP~vG 68 (68)
T 1vbw_A 1 SRCQGKSSWPQLVGSTGAAAKAVIERENPRVRAVIIKVGSGATKDFRCDRVRVWVTERGIVARPPTIG 68 (68)
T ss_dssp CCSCSCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTSCCCCSCCTTEEEEEECTTSBBCSCCEEC
T ss_pred CCCCCCCcCHHHCCcCHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEecCcCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999998
No 3
>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1
Probab=100.00 E-value=1.5e-37 Score=180.59 Aligned_cols=69 Identities=52% Similarity=0.805 Sum_probs=67.3
Q ss_pred CCCCCCCCCCccccCcchHHHHHHHHhhCCCCcEEEeeCCCccccCCCCCeeEEEECCCCcEEEcCccC
Q 035202 2 ASECRGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVPTIG 70 (70)
Q Consensus 2 ~~~c~~k~~WpelVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vT~Df~~~RV~v~vD~~g~V~~vP~vG 70 (70)
|+.|++|++||||||+++++|+.+|++|+|++++++|+||+++|||||+||||||+|++|+|+++|+||
T Consensus 2 ~~~c~~k~sWpelVG~~~~~A~~~i~~e~p~~~vrvl~pg~~vT~Dfr~~RV~v~vD~~g~V~~vP~ig 70 (70)
T 1dwm_A 2 SRRCPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHIT 70 (70)
T ss_dssp CCCCSSCSBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCCSCCTTEEEEEECTTSBBCSCCBBC
T ss_pred CCcCCChhHhHHHcCCcHHHHHHHHHHhCCCceEEEecCCCccCCccCCCeEEEEECCCCeEEeCCcCC
Confidence 567999999999999999999999999999999999999999999999999999999999999999998
No 4
>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} SCOP: d.40.1.0 PDB: 3rdz_C
Probab=100.00 E-value=6.4e-36 Score=177.85 Aligned_cols=67 Identities=43% Similarity=0.806 Sum_probs=64.7
Q ss_pred CCCCCCCCCccccCcchHHHHHHHHhhCCCCcEEEeeCCCccccCCCCCeeEEEECCCCcEEEcCcc
Q 035202 3 SECRGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVPTI 69 (70)
Q Consensus 3 ~~c~~k~~WpelVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vT~Df~~~RV~v~vD~~g~V~~vP~v 69 (70)
.+|++|+|||||||+++++|+++|++|||+++++|+++|+++||||||||||||+|++|+|+++|+|
T Consensus 12 ~~~~~K~sWPELVG~~~~~A~~~I~~e~P~v~v~Vl~~Gs~VT~Dfr~~RVrV~VD~~g~V~~~P~i 78 (79)
T 3rdy_A 12 RQCSGKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVVVDTPVV 78 (79)
T ss_dssp -CCCSCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCSCCCSSEEEEEECTTSBBCSCCBB
T ss_pred hcCCCCCcChHHCCcCHHHHHHHHHHHCCCCceEEeCCCCccCCccCCCEEEEEECCCCeEEeCcee
Confidence 3688999999999999999999999999999999999999999999999999999999999999997
No 5
>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ...
Probab=100.00 E-value=6.8e-36 Score=171.31 Aligned_cols=64 Identities=31% Similarity=0.606 Sum_probs=62.3
Q ss_pred CCCCCccccCcchHHHHHHHHhhCCCCcEEEeeCCCccccCCCCCeeEEEECCCCcEEEcCccC
Q 035202 7 GKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVPTIG 70 (70)
Q Consensus 7 ~k~~WpelVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vT~Df~~~RV~v~vD~~g~V~~vP~vG 70 (70)
.|+|||||||+++++|+.+|++|+|++.++++++|+++||||||||||||+|++|+|+++|+||
T Consensus 1 ~k~sWPELVG~~~~~A~~~I~~d~p~v~v~vl~~g~~vT~Df~~~RV~v~vD~~g~V~~vP~iG 64 (64)
T 1to2_I 1 MKTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVPRVG 64 (64)
T ss_dssp -CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCEEECBCCTTEEEEEECTTSBBCSCCEEC
T ss_pred CCcCCHhhCCCcHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCeEEecCcCC
Confidence 3899999999999999999999999999999999999999999999999999999999999998
No 6
>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I
Probab=100.00 E-value=3.6e-35 Score=175.73 Aligned_cols=66 Identities=30% Similarity=0.554 Sum_probs=63.9
Q ss_pred CCCCCCCccccCcchHHHHHHHHhhCCCCcEEEeeCCCccccCCCCCeeEEEECCCCcEEEcCccC
Q 035202 5 CRGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVNTRGTVTRVPTIG 70 (70)
Q Consensus 5 c~~k~~WpelVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vT~Df~~~RV~v~vD~~g~V~~vP~vG 70 (70)
|.+|++||||||+++++|+.+|++|+|++.++||++|+++||||||||||||+|++|+|+++|+||
T Consensus 18 ~~~K~sWPELVG~~~~~A~~~I~~d~p~v~vrVl~~G~~VT~Dfr~dRV~V~vD~~g~V~~vP~vG 83 (83)
T 2ci2_I 18 HNLKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAEVPRVG 83 (83)
T ss_dssp -CCCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCSCCCTTEEEEEECTTSBBCSCCEEC
T ss_pred CCChhhhHHHcCCcHHHHHHHHHhhCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEeCCcCC
Confidence 558999999999999999999999999999999999999999999999999999999999999998
No 7
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=100.00 E-value=3e-35 Score=171.20 Aligned_cols=65 Identities=34% Similarity=0.436 Sum_probs=61.3
Q ss_pred CCCCCCccccCcchHHHHHHHHhhCCCCcEEEeeCCCccccCCCCCeeEEEEC-CCCcEEEcCccC
Q 035202 6 RGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRVRVWVN-TRGTVTRVPTIG 70 (70)
Q Consensus 6 ~~k~~WpelVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vT~Df~~~RV~v~vD-~~g~V~~vP~vG 70 (70)
++|+|||||||+++++|+.+|++|+|++++++|++|+++||||||||||||+| ++|+|+++|+||
T Consensus 5 ~~k~sWPELVG~~~~~A~~~I~~d~p~~~v~vl~~g~~vT~Df~~~RV~V~vD~~~g~V~~vP~iG 70 (70)
T 1cse_I 5 SELKSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPHVG 70 (70)
T ss_dssp ---CBCGGGTTSBHHHHHHHHHHHCTTSEEEEEETTCCEECCCCTTEEEEEEETTTTEECSCCEEC
T ss_pred CCCCcCHHHcCccHHHHHHHHHHHCCCCeEEEecCCCccCCccCCCeEEEEEcCCCCEEEeCCcCC
Confidence 36999999999999999999999999999999999999999999999999999 999999999998
No 8
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=99.93 E-value=1.8e-26 Score=125.37 Aligned_cols=47 Identities=28% Similarity=0.386 Sum_probs=36.6
Q ss_pred CCCCCccccCcchHHHHHHHHhhCCCCcEEEeeCCCccccCCCCCee
Q 035202 7 GKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDFLCTRV 53 (70)
Q Consensus 7 ~k~~WpelVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vT~Df~~~RV 53 (70)
.|+|||||||+++++|+++|++|||++.++|+++|+++||||||||+
T Consensus 1 ~K~sWPELVG~~~~~A~~~I~~e~p~v~v~vl~~gs~vT~Df~~~R~ 47 (47)
T 1cq4_A 1 MKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMGQQQQGM 47 (47)
T ss_dssp -CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCC---------
T ss_pred CCcCChhhcCccHHHHHHHHHHHCCCCEEEEeCCCCCcCcccCCCCC
Confidence 38999999999999999999999999999999999999999999996
No 9
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=99.87 E-value=1.4e-22 Score=109.25 Aligned_cols=44 Identities=52% Similarity=0.802 Sum_probs=42.1
Q ss_pred CCCCCCCCCCccccCcchHHHHHHHHhhCCCCcEEEeeCCCcccc
Q 035202 2 ASECRGKSSWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTG 46 (70)
Q Consensus 2 ~~~c~~k~~WpelVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vT~ 46 (70)
|+ |++|+|||||||+++++|+++|++|||++.++|+++|+++|+
T Consensus 2 s~-c~~K~sWPELVG~~~~~A~~~I~~e~P~v~v~vl~~gs~vT~ 45 (45)
T 1hym_A 2 SS-CPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTK 45 (45)
T ss_dssp CC-CCSCSBCCCCTTSCHHHHHHHHHHHCTTCEEEEEECCSCCCC
T ss_pred CC-CCCCCcChhhcCCcHHHHHHHHHHHCCCCeEEEecCCCcCCC
Confidence 44 999999999999999999999999999999999999999996
No 10
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=99.37 E-value=2.6e-13 Score=65.39 Aligned_cols=24 Identities=63% Similarity=1.225 Sum_probs=23.5
Q ss_pred CCCCCeeEEEECCCCcEEEcCccC
Q 035202 47 DFLCTRVRVWVNTRGTVTRVPTIG 70 (70)
Q Consensus 47 Df~~~RV~v~vD~~g~V~~vP~vG 70 (70)
||||+||+||+|++|+|+++|+||
T Consensus 1 Df~~~RVrvfvd~~g~V~~~P~iG 24 (26)
T 1hym_B 1 DFRCNRVRIWVNKRGLVVSPPRIG 24 (26)
T ss_dssp CCCTTEEEEEEETTTEEECCSBCC
T ss_pred CCCCCEEEEEECCCCcEEECCccc
Confidence 899999999999999999999998
No 11
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=80.15 E-value=0.99 Score=24.30 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=17.6
Q ss_pred CCCccccCcchHHHHHHHHhh
Q 035202 9 SSWPELLGAQGVEAAATVESD 29 (70)
Q Consensus 9 ~~WpelVG~~~~~A~~~I~~d 29 (70)
..=|+|+|++..+|+..++..
T Consensus 8 v~VPdv~G~~~~~A~~~L~~~ 28 (71)
T 3ouv_A 8 KDIPDVAGQTVDVAQKNMNVY 28 (71)
T ss_dssp EECCCCTTCBHHHHHHHHHHT
T ss_pred eECCCcCCCCHHHHHHHHHHC
Confidence 456899999999999887765
No 12
>2kuf_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=72.64 E-value=5.6 Score=23.72 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=17.7
Q ss_pred CCCCccccCcchHHHHHHHHhh
Q 035202 8 KSSWPELLGAQGVEAAATVESD 29 (70)
Q Consensus 8 k~~WpelVG~~~~~A~~~I~~d 29 (70)
+..=|+|+|++..+|...++..
T Consensus 7 ~v~vPdv~G~~~~~A~~~L~~~ 28 (139)
T 2kuf_A 7 TKDIPDVAGQTVDVAQKNLNVY 28 (139)
T ss_dssp EEEECCCCSSBHHHHHHHHHHH
T ss_pred ceeCCCcCCCCHHHHHHHHHHC
Confidence 3456899999999999888754
No 13
>2kue_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=54.80 E-value=6.7 Score=23.45 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=18.2
Q ss_pred CCCccccCcchHHHHHHHHhhC
Q 035202 9 SSWPELLGAQGVEAAATVESDN 30 (70)
Q Consensus 9 ~~WpelVG~~~~~A~~~I~~d~ 30 (70)
..=|+|+|++..+|+..++...
T Consensus 76 v~vPd~~G~~~~~A~~~L~~~G 97 (138)
T 2kue_A 76 KDIPDVAGQTVDVAQKNLNVYG 97 (138)
T ss_dssp EECCCCTTSBHHHHHHHHHHHS
T ss_pred eeCCccCCCCHHHHHHHHHHCC
Confidence 4568999999999998887654
No 14
>2kui_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=50.28 E-value=39 Score=22.40 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=34.3
Q ss_pred CCCccccCcchHHHHHHHHhhCCCCcEEEe-------eCCCccccCC-------CCCeeEEEECCCCcEEEcC
Q 035202 9 SSWPELLGAQGVEAAATVESDNPLVNAQIV-------LEGSFVTGDF-------LCTRVRVWVNTRGTVTRVP 67 (70)
Q Consensus 9 ~~WpelVG~~~~~A~~~I~~d~p~~~v~vl-------~pg~~vT~Df-------~~~RV~v~vD~~g~V~~vP 67 (70)
..=|+|+|++..+|+..++... +.+.+. +.|..+..+= .-..|.|++...-.-..+|
T Consensus 9 v~VP~v~G~~~~~A~~~L~~~g--l~~~~~~~~s~~~~~g~Vi~q~P~~G~~v~~g~~V~l~vs~G~~~v~vP 79 (275)
T 2kui_A 9 VQVPDVRGQSSADAIATLQNRG--FKIRTLQKPDSTIPPDHVIGTDPAANTSVSAGDEITVNVSTGPEQREIP 79 (275)
T ss_dssp EECCCCTTSCHHHHHHHHHHHT--CEEEEEEEESSSSSCSSCSCCCTTTTSEECSSCEEEEEEEESCCEEECC
T ss_pred EECCccCCCCHHHHHHHHHHCC--CeeEEeeeeCCCCCCCEEEEecCCCCCCcCCCCEEEEEEecCCcccccC
Confidence 3568999999999998887653 333222 2344333331 2356888887543334455
No 15
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=48.02 E-value=21 Score=19.95 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=15.8
Q ss_pred CCCCeeEEEECCCCcEEEc
Q 035202 48 FLCTRVRVWVNTRGTVTRV 66 (70)
Q Consensus 48 f~~~RV~v~vD~~g~V~~v 66 (70)
....++.|+.|++|+|+++
T Consensus 53 ~~~~~l~V~Fd~~g~V~~~ 71 (88)
T 2yh9_A 53 VTQQTLTLTFNSSGVLTNI 71 (88)
T ss_dssp SSCCEEEEEECTTSBEEEE
T ss_pred cEEEEEEEEEcCCCeEEEE
Confidence 3467799999999999886
No 16
>2kud_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=46.92 E-value=11 Score=22.54 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.0
Q ss_pred CCCccccCcchHHHHHHHHhh
Q 035202 9 SSWPELLGAQGVEAAATVESD 29 (70)
Q Consensus 9 ~~WpelVG~~~~~A~~~I~~d 29 (70)
..=|+|+|++..+|+..++..
T Consensus 9 v~vPdv~G~~~~~A~~~L~~~ 29 (140)
T 2kud_A 9 VQVPDVRGQSSADAIATLQNR 29 (140)
T ss_dssp ECCCCCTTSBHHHHHHHHHHH
T ss_pred eECCccCCCCHHHHHHHHHHC
Confidence 467999999999999888765
No 17
>3ge3_E Toluene-4-monooxygenase system protein D; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.137.1.1 PDB: 3dhh_E* 3dhi_E 3ge8_E 3i5j_E 3i63_E 3q14_E 3q2a_E* 3q3m_E* 3q3n_E* 3q3o_E* 1g10_A 1g11_A 2bf2_A 3ri7_E 2bf5_A 2bf3_A* 2bf3_B*
Probab=44.45 E-value=25 Score=20.92 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=17.5
Q ss_pred HHHHHhhCCCCcEEEeeCCCcccc
Q 035202 23 AATVESDNPLVNAQIVLEGSFVTG 46 (70)
Q Consensus 23 ~~~I~~d~p~~~v~vl~pg~~vT~ 46 (70)
.++|.++||++.++|...+.++-.
T Consensus 28 VeaI~~DNP~~~v~V~d~pa~vrI 51 (103)
T 3ge3_E 28 IETAEIDNPGKEITVEDRRAYVRI 51 (103)
T ss_dssp HHHHHHHCTTSCCEEEECSSEEEE
T ss_pred HHHHHhHCcCCEEEEeecCCEEEE
Confidence 468899999999776665555433
No 18
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=42.25 E-value=20 Score=19.65 Aligned_cols=15 Identities=33% Similarity=0.466 Sum_probs=11.8
Q ss_pred eeEEEECCCCcEEEc
Q 035202 52 RVRVWVNTRGTVTRV 66 (70)
Q Consensus 52 RV~v~vD~~g~V~~v 66 (70)
.|.+.+|.+|.|..+
T Consensus 28 ~v~~~i~~~G~v~~~ 42 (90)
T 1u07_A 28 KVKFDVTPDGRVDNV 42 (90)
T ss_dssp EEEEEECTTSCEEEE
T ss_pred EEEEEECCCCCEEEE
Confidence 367789999998875
No 19
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell membrane, cell OU membrane, lipoprotein, membrane, palmitate, membrane protei; NMR {Escherichia coli} PDB: 2kxx_A
Probab=35.53 E-value=28 Score=20.04 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.2
Q ss_pred CCCeeEEEECCCCcEEEc
Q 035202 49 LCTRVRVWVNTRGTVTRV 66 (70)
Q Consensus 49 ~~~RV~v~vD~~g~V~~v 66 (70)
...++.|+.|++|+|+++
T Consensus 68 ~~~~l~V~Fd~~g~V~~i 85 (102)
T 2km7_A 68 TQQTLTLTFNSSGVLTNI 85 (102)
T ss_dssp CCCCEEEEEETTTEEEEE
T ss_pred EEEEEEEEECCCCeEEEE
Confidence 356799999999999886
No 20
>3py9_A Protein kinase; pasta, muropeptide binding, phosphorylation, membran transferase; 2.20A {Staphylococcus aureus subsp} PDB: 3m9g_A
Probab=34.84 E-value=19 Score=24.40 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=17.2
Q ss_pred CCCCccccCcchHHHHHHHHhh
Q 035202 8 KSSWPELLGAQGVEAAATVESD 29 (70)
Q Consensus 8 k~~WpelVG~~~~~A~~~I~~d 29 (70)
...=|+|+|++..+|...++..
T Consensus 6 ~v~VPdv~G~t~~eA~~~L~~~ 27 (294)
T 3py9_A 6 YEETPDVIGKSVKEAEQIFNKN 27 (294)
T ss_dssp --CCCCCTTCCHHHHHHHHHHT
T ss_pred eeECCCcCCCCHHHHHHHHHHC
Confidence 4567999999999999887664
No 21
>2oqc_A Penicillin V acylase; NTN-hydrolase, conjugated bIle acid HY choloylglycine hydrolase, hydrolase; 2.50A {Bacillus subtilis}
Probab=34.55 E-value=32 Score=23.54 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=35.3
Q ss_pred cchHHHHHHHHhhC------------CCCcEEEe-eCCCccccCCCCCeeEEEECCCCcEEEcCc
Q 035202 17 AQGVEAAATVESDN------------PLVNAQIV-LEGSFVTGDFLCTRVRVWVNTRGTVTRVPT 68 (70)
Q Consensus 17 ~~~~~A~~~I~~d~------------p~~~v~vl-~pg~~vT~Df~~~RV~v~vD~~g~V~~vP~ 68 (70)
.+.+||++.+++-. +.++..+- +-|..+..+|..+++.|+-++-+..+.-|.
T Consensus 112 ~tV~Ea~~~L~~~~i~~~~~~~~~~~~~~H~~i~D~sG~s~viE~~~g~l~i~~n~~~V~TN~P~ 176 (327)
T 2oqc_A 112 QSLEDVKEKIRSLTIVEKKLDLLDTVLPLHWILSDRTGRNLTIEPRADGLKVYDNQPGVMTNSPD 176 (327)
T ss_dssp CSHHHHHHHGGGEEEBCCCBGGGTBCCCEEEEEECTTSCEEEEEEETTEEEEEECSSCEECSSSC
T ss_pred CCHHHHHHHHHcCceecccccCcCCccceEEEEEcCCCCEEEEEEecCCcEEEeCCceEEcCCCC
Confidence 45677777776533 23333333 347889999999999998877777776664
No 22
>3db7_A Putative calcium-regulated periplasmic protein; structural genomics, joint center for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron} SCOP: d.98.2.1 PDB: 3due_A*
Probab=34.07 E-value=75 Score=18.86 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCCcEE-EeeCCCccccCCCCCeeEEEECCCCcEEEc
Q 035202 22 AAATVESDNPLVNAQ-IVLEGSFVTGDFLCTRVRVWVNTRGTVTRV 66 (70)
Q Consensus 22 A~~~I~~d~p~~~v~-vl~pg~~vT~Df~~~RV~v~vD~~g~V~~v 66 (70)
+...|++..|+..+. +=+....--.++. +++-|.+|.+|....+
T Consensus 81 i~~~I~~~yp~~~I~~ie~~~~~YeV~L~-ng~el~Fd~~G~~i~i 125 (127)
T 3db7_A 81 IQKYVTTNYPDAKVLKIERDKKDYEVKLS-NRTELKFDLKFNLIDI 125 (127)
T ss_dssp HHHHHHHHCTTCCEEEEEECSSEEEEEET-TSCEEEEETTCCEEEE
T ss_pred HHHHHHHHCCCCeEEEEEEECCEEEEEEC-CCcEEEEcCCCCEEec
Confidence 467999999999877 4444333333343 5689999999987754
No 23
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=33.86 E-value=29 Score=21.94 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=14.8
Q ss_pred cccCCCCCeeEEEECC-CCcEE
Q 035202 44 VTGDFLCTRVRVWVNT-RGTVT 64 (70)
Q Consensus 44 vT~Df~~~RV~v~vD~-~g~V~ 64 (70)
.++.-.+.||-||+|- .|.|+
T Consensus 122 l~~~~~p~rVGVfLDye~G~lS 143 (186)
T 3uv9_A 122 LSVIICPDRVGVFVDYEACTVS 143 (186)
T ss_dssp CCCSSCCSEEEEEEETTTTEEE
T ss_pred ccccccCCEEEEEeecCCCEEE
Confidence 3445668899999994 56665
No 24
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=32.23 E-value=38 Score=27.27 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=30.8
Q ss_pred CCcEEEeeCCCccccCCCCCeeEEE------ECCCCcEEEcCc
Q 035202 32 LVNAQIVLEGSFVTGDFLCTRVRVW------VNTRGTVTRVPT 68 (70)
Q Consensus 32 ~~~v~vl~pg~~vT~Df~~~RV~v~------vD~~g~V~~vP~ 68 (70)
.++++|+||+..+-.+-|.+-|-|. .|++++|.++|-
T Consensus 469 ~~~~~v~p~~~~~~~~~~~~g~kv~~g~~~~~~~~~~~~~~p~ 511 (900)
T 4a7k_A 469 KLTLVVLPPFARLDVERNVSGVKVMAGTVCWADENGKHERVPA 511 (900)
T ss_dssp EEEEEEECTTCEEECCTTTCEEEEEEEEEEEEETTEEEEECSC
T ss_pred eEEEEEcCCccccccccccCceEEEEEEeeeccCCCcEEeeEC
Confidence 3467899999999999888888885 457999999985
No 25
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=31.76 E-value=27 Score=19.67 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=11.7
Q ss_pred eeEEEECCCCcEEEc
Q 035202 52 RVRVWVNTRGTVTRV 66 (70)
Q Consensus 52 RV~v~vD~~g~V~~v 66 (70)
.|.+.+|.+|.|..+
T Consensus 43 ~v~f~I~~~G~v~~~ 57 (106)
T 2k9k_A 43 TLSFTIDTTGKAVDI 57 (106)
T ss_dssp EEEEEEETTTEEEEE
T ss_pred EEEEEECCCCcEEEE
Confidence 466778999998765
No 26
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=28.19 E-value=32 Score=21.07 Aligned_cols=13 Identities=15% Similarity=0.580 Sum_probs=11.5
Q ss_pred EEEECCCCcEEEc
Q 035202 54 RVWVNTRGTVTRV 66 (70)
Q Consensus 54 ~v~vD~~g~V~~v 66 (70)
-+|+|.+|+|+.+
T Consensus 72 iiFld~~g~Vv~i 84 (136)
T 3pjy_A 72 MLFIASDGTIRTI 84 (136)
T ss_dssp EEEECTTSBEEEE
T ss_pred EEEECCCCEEEEE
Confidence 6799999999886
No 27
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=28.08 E-value=32 Score=21.26 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=11.2
Q ss_pred EEEECCCCcEEEc
Q 035202 54 RVWVNTRGTVTRV 66 (70)
Q Consensus 54 ~v~vD~~g~V~~v 66 (70)
-+|+|.+|+|+.+
T Consensus 86 iiFid~dg~Vv~i 98 (140)
T 3m7a_A 86 IIFVGLDRRVMNI 98 (140)
T ss_dssp EEEECTTSBEEEE
T ss_pred EEEECCCCeEEEE
Confidence 6799999999876
No 28
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} SCOP: d.212.1.1
Probab=26.78 E-value=48 Score=19.86 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.3
Q ss_pred CeeEEEECCCCcEEEcC
Q 035202 51 TRVRVWVNTRGTVTRVP 67 (70)
Q Consensus 51 ~RV~v~vD~~g~V~~vP 67 (70)
-.|+|.+|.+|.|..+-
T Consensus 54 ~~V~v~l~~dG~v~~v~ 70 (129)
T 1lr0_A 54 VEVLIEMLPDGTITNAS 70 (129)
T ss_dssp EEEEEEECTTSBEEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 47888999999998863
No 29
>2bjf_A Choloylglycine hydrolase; amidohydrolase, NTN-hydrolase, bIle acids, BSH; HET: DXC; 1.67A {Clostridium perfringens} PDB: 2bjg_A 2rlc_A* 2rf8_A 2rg2_A
Probab=26.42 E-value=54 Score=22.37 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=34.0
Q ss_pred cchHHHHHHHHhhC------------CCCcEEEe-eCCCccccCCCCCeeEEEECCCCcEEEcCc
Q 035202 17 AQGVEAAATVESDN------------PLVNAQIV-LEGSFVTGDFLCTRVRVWVNTRGTVTRVPT 68 (70)
Q Consensus 17 ~~~~~A~~~I~~d~------------p~~~v~vl-~pg~~vT~Df~~~RV~v~vD~~g~V~~vP~ 68 (70)
.+.+||++.+++-. +.++..+- +-|..+..+|..+++.|+-++-+..+.-|.
T Consensus 114 ~tV~Ea~~~l~~~~i~~~~~~~~~~~~~~H~~i~D~sG~s~viE~~~g~l~i~~n~~~V~TN~P~ 178 (329)
T 2bjf_A 114 SSVEEVKEALKNANIVDIPISENIPNTTLHWMISDITGKSIVVEQTKEKLNVFDNNIGVLTNSPT 178 (329)
T ss_dssp SSHHHHHHHHTTEEEECCCSSTTCCCCCEEEEEECTTSCEEEEEECSSCEEEEECSSCEECSSSC
T ss_pred CCHHHHHHHHHhCceecccccCcCCCcceEEEEEcCCCCEEEEEEecCCcEEEeCCceEEcCCCC
Confidence 45667776665532 12232233 347888899999999998877777776664
No 30
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=26.19 E-value=46 Score=22.35 Aligned_cols=39 Identities=21% Similarity=0.106 Sum_probs=30.2
Q ss_pred CCccccCcchHHHHHHHHhhCCCCcEEEeeCCCccccCC
Q 035202 10 SWPELLGAQGVEAAATVESDNPLVNAQIVLEGSFVTGDF 48 (70)
Q Consensus 10 ~WpelVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vT~Df 48 (70)
+=|+-+|.+--.+.....+..|+-...|+.-|++.|.|+
T Consensus 102 ~~P~~lG~DR~~~~vaA~~~~~~~~~iVVD~GTA~T~d~ 140 (266)
T 3djc_A 102 RNPVEVGADRIANAIAATHSFPNQNIIVIDFGTATTFCA 140 (266)
T ss_dssp SSGGGSCHHHHHHHHHHHHHSTTSEEEEEEESSEEEEEE
T ss_pred CChhhhHHHHHHHHHHHHHhcCCCCEEEEECCCeeEEEE
Confidence 346788988777665556667766788999999999995
No 31
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=24.35 E-value=43 Score=21.30 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=13.5
Q ss_pred CCCCCeeEEEEC-CCCcEE
Q 035202 47 DFLCTRVRVWVN-TRGTVT 64 (70)
Q Consensus 47 Df~~~RV~v~vD-~~g~V~ 64 (70)
.-.+.||.||+| +.|.|+
T Consensus 122 ~~~~~rVGVfLDye~G~lS 140 (188)
T 2vok_A 122 QVPPCQIGIFVDYEAGVVS 140 (188)
T ss_dssp SSCCSEEEEEEETTTTEEE
T ss_pred CCCCCEEEEEEEcCCCEEE
Confidence 345899999999 456665
No 32
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=23.53 E-value=45 Score=21.12 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=13.4
Q ss_pred CCCCCeeEEEECC-CCcEE
Q 035202 47 DFLCTRVRVWVNT-RGTVT 64 (70)
Q Consensus 47 Df~~~RV~v~vD~-~g~V~ 64 (70)
.-.+.||-||+|- .|.|+
T Consensus 130 ~~~~~rVGVfLDye~G~lS 148 (193)
T 3kb5_A 130 ERRPTRIGLYLSFGDGVLS 148 (193)
T ss_dssp SSCCSEEEEEEETTTTEEE
T ss_pred CCCCCEEEEEEEcCCCEEE
Confidence 3467899999994 56665
No 33
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=23.31 E-value=46 Score=21.09 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.4
Q ss_pred CCCCCeeEEEEC-CCCcEE
Q 035202 47 DFLCTRVRVWVN-TRGTVT 64 (70)
Q Consensus 47 Df~~~RV~v~vD-~~g~V~ 64 (70)
.-.+.||.||+| +.|.|+
T Consensus 127 ~~~~~rVGVfLDye~G~lS 145 (191)
T 2wl1_A 127 KEPPKRVGIFVDYRVGSIS 145 (191)
T ss_dssp SSCCSEEEEEEETTTTEEE
T ss_pred ccCCcEEEEEEEcCCCEEE
Confidence 345899999999 456664
No 34
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=23.23 E-value=42 Score=18.97 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=11.0
Q ss_pred CCCccccCCCCCeeEEEECCCC
Q 035202 40 EGSFVTGDFLCTRVRVWVNTRG 61 (70)
Q Consensus 40 pg~~vT~Df~~~RV~v~vD~~g 61 (70)
+|+..+.++....+-|+-+.+|
T Consensus 18 ~g~~~~~~~~g~~i~v~r~~~g 39 (113)
T 2jo6_A 18 PETGVCALLGDEQVAIFRPYHS 39 (113)
T ss_dssp TTEEEEEEETTEEEEEEECSSS
T ss_pred CCCeEEEEECCEEEEEEEECCC
Confidence 3444444444455666655455
No 35
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=22.39 E-value=76 Score=17.75 Aligned_cols=27 Identities=19% Similarity=-0.001 Sum_probs=14.5
Q ss_pred eCCCccccCC-CCCeeEEEECCCCcEEE
Q 035202 39 LEGSFVTGDF-LCTRVRVWVNTRGTVTR 65 (70)
Q Consensus 39 ~pg~~vT~Df-~~~RV~v~vD~~g~V~~ 65 (70)
++|...+..+ ....+.|+-+.+|.+..
T Consensus 12 ~~g~~~~~~~~~g~~v~v~r~~~g~~~A 39 (111)
T 1vm9_A 12 WVGEMETFETSDGTEVLIVNSEEHGVKA 39 (111)
T ss_dssp CTTCEEEEECTTCCEEEEEEETTTEEEE
T ss_pred CCCCeEEEEEcCCCEEEEEEeCCCeEEE
Confidence 3455444444 45566666665665543
No 36
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=21.52 E-value=71 Score=20.42 Aligned_cols=18 Identities=22% Similarity=0.229 Sum_probs=14.9
Q ss_pred CCCCeeEEEECCCCcEEE
Q 035202 48 FLCTRVRVWVNTRGTVTR 65 (70)
Q Consensus 48 f~~~RV~v~vD~~g~V~~ 65 (70)
++++-+.|..|++|.|..
T Consensus 137 ~~p~~g~vv~d~~g~v~~ 154 (252)
T 3oam_A 137 FNPNAVKVITDKSGYALY 154 (252)
T ss_dssp TCTTSCEEEECTTSBEEE
T ss_pred hCCCceEEEECCCCeEEE
Confidence 466668899999999988
No 37
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Probab=20.87 E-value=45 Score=22.30 Aligned_cols=15 Identities=33% Similarity=0.466 Sum_probs=12.4
Q ss_pred eeEEEECCCCcEEEc
Q 035202 52 RVRVWVNTRGTVTRV 66 (70)
Q Consensus 52 RV~v~vD~~g~V~~v 66 (70)
.|++.+|.+|.|..+
T Consensus 167 ~V~f~Id~dG~V~~v 181 (229)
T 2grx_C 167 KVKFDVTPDGRVDNV 181 (229)
T ss_dssp CEEEECCTTSCCEEE
T ss_pred EEEEEECCCCCEEEE
Confidence 477789999999875
No 38
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=20.66 E-value=71 Score=20.47 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=14.0
Q ss_pred cCCCCCeeEEEEC-CCCcEE
Q 035202 46 GDFLCTRVRVWVN-TRGTVT 64 (70)
Q Consensus 46 ~Df~~~RV~v~vD-~~g~V~ 64 (70)
+.-.+.||.||+| +.|.|+
T Consensus 123 ~~~~~~rVGVfLDye~G~lS 142 (201)
T 2fbe_A 123 VSPQLHRVGIFLDVGMRSIA 142 (201)
T ss_dssp CCTTCCEEEEEEETTTTEEE
T ss_pred cCCCCCEEEEEEEcCCCEEE
Confidence 4456899999999 456664
No 39
>2inp_L Phenol hydroxylase component PHM; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_L 1hqi_A
Probab=20.63 E-value=65 Score=18.49 Aligned_cols=14 Identities=36% Similarity=0.378 Sum_probs=10.6
Q ss_pred HHHHHHhhCCCCcE
Q 035202 22 AAATVESDNPLVNA 35 (70)
Q Consensus 22 A~~~I~~d~p~~~v 35 (70)
..+.|.++||++.+
T Consensus 18 vVeai~~dNP~~~V 31 (89)
T 2inp_L 18 LAEAVMEDNPDAEM 31 (89)
T ss_dssp HHHHHHSSCTTCEE
T ss_pred HHHHHHhHCcCcEE
Confidence 35789999999543
No 40
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=20.54 E-value=1.4e+02 Score=17.53 Aligned_cols=43 Identities=7% Similarity=-0.058 Sum_probs=29.3
Q ss_pred HHHHHhhCCCCcEE-EeeCCCccccCCCCCeeEEEECCCCcEEEc
Q 035202 23 AATVESDNPLVNAQ-IVLEGSFVTGDFLCTRVRVWVNTRGTVTRV 66 (70)
Q Consensus 23 ~~~I~~d~p~~~v~-vl~pg~~vT~Df~~~RV~v~vD~~g~V~~v 66 (70)
...|++..|+..+. +=+....--.+.. +.+-|++|.+|.+.++
T Consensus 83 ~~~i~~~yp~~~I~~iek~~~~YeVeL~-~~~el~fd~~G~~i~~ 126 (128)
T 3elg_A 83 SKYMKANYNGHKTVKIERNRKGYELTLE-NGLEVDFDQFGGFLKL 126 (128)
T ss_dssp HHHHHHHSTTCCEEEEEEETTEEEEEET-TSCEEEECTTSCEEEE
T ss_pred HHHHHHHCCCCEEEEEEEeCCEEEEEEC-CCeEEEEeCCCCEEec
Confidence 56889999999877 4343333333333 4589999999988753
No 41
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=20.14 E-value=74 Score=22.15 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=17.2
Q ss_pred hHHHHHHHHhhCCCCcEEEeeCCCccc
Q 035202 19 GVEAAATVESDNPLVNAQIVLEGSFVT 45 (70)
Q Consensus 19 ~~~A~~~I~~d~p~~~v~vl~pg~~vT 45 (70)
..+|.++|++. ..+++.||+..|
T Consensus 174 ~p~vl~AI~~A----D~IvlgPGS~~T 196 (311)
T 3c3d_A 174 SPKVLEAFEKE----ENILIGPSNPIT 196 (311)
T ss_dssp CHHHHHHHHHC----CEEEECSSCTTT
T ss_pred CHHHHHHHHhC----CEEEECCCCCHH
Confidence 44666777664 578999999987
No 42
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Probab=20.14 E-value=91 Score=23.33 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=18.2
Q ss_pred CCCCccccCcchHHHHHHHHhh
Q 035202 8 KSSWPELLGAQGVEAAATVESD 29 (70)
Q Consensus 8 k~~WpelVG~~~~~A~~~I~~d 29 (70)
+..=|+|+|++..+|+..++.-
T Consensus 645 ~~~vPd~~G~~~~~A~~~L~~~ 666 (702)
T 1qme_A 645 AEEVPDMYGWTKETAETLAKWL 666 (702)
T ss_dssp CCBCCCCTTCBHHHHHHHHHHH
T ss_pred CEeCCCCCCCCHHHHHHHHHHC
Confidence 3456999999999999888764
Done!