Query 035213
Match_columns 70
No_of_seqs 17 out of 19
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 10:08:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02985 HEAT: HEAT repeat; I 84.7 3.1 6.8E-05 20.9 3.9 27 10-36 3-29 (31)
2 PF13513 HEAT_EZ: HEAT-like re 74.7 4.7 0.0001 21.6 2.8 26 9-34 30-55 (55)
3 PF13646 HEAT_2: HEAT repeats; 73.6 4 8.7E-05 22.7 2.4 26 10-35 34-59 (88)
4 PF10979 DUF2786: Protein of u 67.6 11 0.00023 21.4 3.3 32 10-41 8-41 (43)
5 PF11272 DUF3072: Protein of u 64.4 4.6 0.0001 25.1 1.4 35 2-37 9-54 (57)
6 COG3905 Predicted transcriptio 62.0 11 0.00025 24.8 3.0 31 10-40 15-47 (83)
7 PF06468 Spond_N: Spondin_N; 52.0 15 0.00033 26.1 2.6 26 1-26 44-69 (196)
8 PF12348 CLASP_N: CLASP N term 50.0 37 0.0008 22.4 4.0 33 10-42 180-212 (228)
9 PF03993 DUF349: Domain of Unk 48.6 32 0.00069 19.5 3.1 25 13-40 44-68 (77)
10 PHA01748 hypothetical protein 43.6 39 0.00086 19.9 3.1 32 10-41 15-46 (60)
11 PF01402 RHH_1: Ribbon-helix-h 43.6 23 0.00051 18.0 1.9 28 10-37 12-39 (39)
12 PF14663 RasGEF_N_2: Rapamycin 41.0 44 0.00095 21.5 3.2 27 8-34 9-35 (115)
13 PF13730 HTH_36: Helix-turn-he 40.0 27 0.00058 18.7 1.8 24 12-36 28-51 (55)
14 PLN02277 H(+) -translocating i 38.5 28 0.00061 30.3 2.5 23 21-43 563-585 (730)
15 PF00435 Spectrin: Spectrin re 37.5 51 0.0011 18.0 2.7 28 12-40 64-91 (105)
16 PRK00733 hppA membrane-bound p 37.1 30 0.00066 29.7 2.5 23 21-43 506-528 (666)
17 TIGR01104 V_PPase vacuolar-typ 35.4 36 0.00077 29.5 2.7 23 21-43 531-553 (697)
18 TIGR02158 PA_CoA_Oxy3 phenylac 33.1 45 0.00097 24.6 2.6 30 6-35 91-120 (237)
19 PF02416 MttA_Hcf106: mttA/Hcf 32.3 78 0.0017 18.3 3.1 25 19-43 21-45 (53)
20 PF00514 Arm: Armadillo/beta-c 32.0 77 0.0017 16.1 3.5 27 8-34 13-39 (41)
21 PF03030 H_PPase: Inorganic H+ 31.8 50 0.0011 28.4 3.0 23 21-43 531-553 (682)
22 smart00185 ARM Armadillo/beta- 31.8 67 0.0015 15.4 3.4 27 8-34 13-39 (41)
23 PF03752 ALF: Short repeats of 29.6 85 0.0018 17.3 2.8 21 11-31 3-23 (43)
24 KOG0635 Adenosine 5'-phosphosu 29.3 18 0.00038 27.5 -0.1 41 20-60 44-84 (207)
25 PF01602 Adaptin_N: Adaptin N 28.2 74 0.0016 23.2 3.0 26 9-34 154-179 (526)
26 TIGR01411 tatAE twin arginine- 27.9 77 0.0017 18.1 2.5 21 19-39 22-42 (47)
27 PF05138 PaaA_PaaC: Phenylacet 27.7 56 0.0012 24.0 2.3 32 5-36 116-147 (263)
28 PLN02255 H(+) -translocating i 27.5 58 0.0013 28.6 2.7 23 21-43 594-616 (765)
29 PF12717 Cnd1: non-SMC mitotic 26.4 1.3E+02 0.0029 19.9 3.7 26 12-37 68-93 (178)
30 PF00482 T2SF: Type II secreti 24.9 1.2E+02 0.0027 16.9 3.0 28 10-37 17-45 (124)
31 cd00020 ARM Armadillo/beta-cat 24.7 1.4E+02 0.003 16.6 3.5 27 9-35 51-77 (120)
32 COG4022 Uncharacterized protei 24.7 58 0.0012 25.8 2.0 42 12-54 209-252 (286)
33 COG1826 TatA Sec-independent p 24.2 90 0.0019 19.6 2.5 20 20-39 25-44 (94)
34 PRK02958 tatA twin arginine tr 23.7 93 0.002 19.7 2.5 19 20-38 25-43 (73)
35 PF15142 INCA1: INCA1 23.6 44 0.00096 24.8 1.2 14 28-41 115-129 (178)
36 smart00150 SPEC Spectrin repea 23.0 96 0.0021 16.9 2.2 27 13-40 62-88 (101)
37 smart00509 TFS2N Domain in the 23.0 1.8E+02 0.004 17.4 3.7 24 12-35 47-70 (75)
38 PF03685 UPF0147: Uncharacteri 22.3 82 0.0018 20.7 2.1 28 9-36 12-41 (85)
39 COG4299 Uncharacterized protei 21.3 47 0.001 27.1 1.0 28 7-39 113-140 (371)
40 PF04225 OapA: Opacity-associa 20.8 62 0.0013 20.0 1.3 16 39-54 42-57 (85)
41 TIGR01410 tatB twin arginine-t 20.3 1.4E+02 0.003 18.6 2.7 21 20-40 24-44 (80)
42 COG0077 PheA Prephenate dehydr 20.3 30 0.00066 26.4 -0.3 45 9-53 132-182 (279)
43 PRK14857 tatA twin arginine tr 20.1 1.5E+02 0.0032 19.3 3.0 22 19-40 26-47 (90)
44 PF08518 GIT_SHD: Spa2 homolog 20.1 1.7E+02 0.0037 16.0 2.8 26 12-37 2-27 (31)
45 COG3396 Uncharacterized conser 20.0 1E+02 0.0022 23.9 2.5 32 5-36 116-147 (265)
No 1
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=84.70 E-value=3.1 Score=20.91 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=21.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 035213 10 GALQRLAKDSNPAIAAAASKTIFELKK 36 (70)
Q Consensus 10 GALQRLAeDsnpaia~aAskai~Elkk 36 (70)
-.+..+.+|++|.|=.+|.++|.++-+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 356788999999999999999988743
No 2
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=74.67 E-value=4.7 Score=21.60 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=20.6
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHH
Q 035213 9 MGALQRLAKDSNPAIAAAASKTIFEL 34 (70)
Q Consensus 9 MGALQRLAeDsnpaia~aAskai~El 34 (70)
|-.|..+-+|+++.|-.+|..||..|
T Consensus 30 ~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 30 LPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 45677788999999998988888643
No 3
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=73.62 E-value=4 Score=22.74 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=21.6
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHH
Q 035213 10 GALQRLAKDSNPAIAAAASKTIFELK 35 (70)
Q Consensus 10 GALQRLAeDsnpaia~aAskai~Elk 35 (70)
-.|-++..|+||.|..+|.+||..+.
T Consensus 34 ~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 34 PALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 35667779999999999999998774
No 4
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=67.57 E-value=11 Score=21.45 Aligned_cols=32 Identities=31% Similarity=0.272 Sum_probs=25.7
Q ss_pred HHHHHhhhc--CCHHHHHHHHHHHHHHHHHHHHH
Q 035213 10 GALQRLAKD--SNPAIAAAASKTIFELKKQWEIE 41 (70)
Q Consensus 10 GALQRLAeD--snpaia~aAskai~Elkkqwe~e 41 (70)
-.|=+||++ +||.=|.+|.+--.+|-.++.|.
T Consensus 8 ~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~i~ 41 (43)
T PF10979_consen 8 RKLLALAESTGSNEHEAEAALAKAQRLMAKYGID 41 (43)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCc
Confidence 357789999 99988888888888888887654
No 5
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=64.37 E-value=4.6 Score=25.11 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=24.3
Q ss_pred ccccccchHHHH-----HhhhcCC------HHHHHHHHHHHHHHHHH
Q 035213 2 WTLGNAGMGALQ-----RLAKDSN------PAIAAAASKTIFELKKQ 37 (70)
Q Consensus 2 WTLGNAGMGALQ-----RLAeDsn------paia~aAskai~Elkkq 37 (70)
|+-|..=|-+.| .|++... ... +-||+-|++|+++
T Consensus 9 w~tGDePmT~aQ~syL~tL~e~Age~~~~~Ltk-aeAs~rId~L~~~ 54 (57)
T PF11272_consen 9 WVTGDEPMTGAQASYLKTLSEEAGEPFPDDLTK-AEASERIDELQAQ 54 (57)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccH-HHHHHHHHHHHHH
Confidence 777888787755 4666433 333 4579999999976
No 6
>COG3905 Predicted transcriptional regulator [Transcription]
Probab=62.05 E-value=11 Score=24.78 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=24.7
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHH-HHHH-HHH
Q 035213 10 GALQRLAKDSNPAIAAAASKTIFE-LKKQ-WEI 40 (70)
Q Consensus 10 GALQRLAeDsnpaia~aAskai~E-lkkq-we~ 40 (70)
+.|++||+-++.....-+-.||.. ++.| |++
T Consensus 15 ~rLd~lAe~~~rsrs~i~~~Aia~~v~re~~q~ 47 (83)
T COG3905 15 RRLDELAEATDRSRSYIAEQAIADFVDREEWQL 47 (83)
T ss_pred HHHHHHHHHhccChhhhHHHHHHHHHHHHHHHH
Confidence 579999999888888778888876 6666 765
No 7
>PF06468 Spond_N: Spondin_N; InterPro: IPR009465 This conserved region is found in the N-terminal half of several Spondin proteins []. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells [].; PDB: 3D34_A 3Q13_A.
Probab=52.03 E-value=15 Score=26.08 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=14.9
Q ss_pred CccccccchHHHHHhhhcCCHHHHHH
Q 035213 1 MWTLGNAGMGALQRLAKDSNPAIAAA 26 (70)
Q Consensus 1 mWTLGNAGMGALQRLAeDsnpaia~a 26 (70)
||.+|-+---+|++|||+-++..-.+
T Consensus 44 lf~~G~~AS~gle~lAE~G~~~~L~~ 69 (196)
T PF06468_consen 44 LFEYGEPASEGLERLAEDGDPSGLEA 69 (196)
T ss_dssp S--TTS---HHHHHHHHH---HHHHH
T ss_pred ccccCCcccHHHHHHHhcCCHHHHHH
Confidence 79999999999999999998875443
No 8
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=50.02 E-value=37 Score=22.35 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=27.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHh
Q 035213 10 GALQRLAKDSNPAIAAAASKTIFELKKQWEIEE 42 (70)
Q Consensus 10 GALQRLAeDsnpaia~aAskai~Elkkqwe~ee 42 (70)
-++.++..|++|.|=.+|-+++..+.+.|....
T Consensus 180 ~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 180 KALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 467889999999999999999999999998764
No 9
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=48.60 E-value=32 Score=19.50 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=17.8
Q ss_pred HHhhhcCCHHHHHHHHHHHHHHHHHHHH
Q 035213 13 QRLAKDSNPAIAAAASKTIFELKKQWEI 40 (70)
Q Consensus 13 QRLAeDsnpaia~aAskai~Elkkqwe~ 40 (70)
.-|+...+ -..+++.|.+|+++|.-
T Consensus 44 ~~l~~~~d---~~~~~~~~k~l~~~Wk~ 68 (77)
T PF03993_consen 44 EALAESED---WKEAAEEIKELQQEWKE 68 (77)
T ss_pred HHhccccc---HHHHHHHHHHHHHHHHH
Confidence 34444444 56778899999999974
No 10
>PHA01748 hypothetical protein
Probab=43.63 E-value=39 Score=19.90 Aligned_cols=32 Identities=22% Similarity=0.090 Sum_probs=26.6
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 035213 10 GALQRLAKDSNPAIAAAASKTIFELKKQWEIE 41 (70)
Q Consensus 10 GALQRLAeDsnpaia~aAskai~Elkkqwe~e 41 (70)
..|.++|+..+...+.+..+||.++-+....+
T Consensus 15 ~eld~~a~~~g~~RSE~Ir~Ai~~~~~~~~~~ 46 (60)
T PHA01748 15 ELLDRYAIKHGLNRSEAIRKAIEKMVKDELKK 46 (60)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999887775554
No 11
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=43.62 E-value=23 Score=18.04 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=21.7
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHH
Q 035213 10 GALQRLAKDSNPAIAAAASKTIFELKKQ 37 (70)
Q Consensus 10 GALQRLAeDsnpaia~aAskai~Elkkq 37 (70)
-.|+++|+..+..++.....||.+.-+|
T Consensus 12 ~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 12 ERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp HHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 4688999999988888888888776543
No 12
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=41.02 E-value=44 Score=21.47 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=22.1
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHHH
Q 035213 8 GMGALQRLAKDSNPAIAAAASKTIFEL 34 (70)
Q Consensus 8 GMGALQRLAeDsnpaia~aAskai~El 34 (70)
||..|-+=--|+++.|+.+|-+.++|.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~ 35 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEA 35 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 566777777899999999998888774
No 13
>PF13730 HTH_36: Helix-turn-helix domain
Probab=40.03 E-value=27 Score=18.72 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=17.7
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHH
Q 035213 12 LQRLAKDSNPAIAAAASKTIFELKK 36 (70)
Q Consensus 12 LQRLAeDsnpaia~aAskai~Elkk 36 (70)
..+||++.+-. -....|+|.+|++
T Consensus 28 ~~~la~~~g~s-~~Tv~~~i~~L~~ 51 (55)
T PF13730_consen 28 QETLAKDLGVS-RRTVQRAIKELEE 51 (55)
T ss_pred HHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 46677777666 5667889999976
No 14
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=38.51 E-value=28 Score=30.26 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 035213 21 PAIAAAASKTIFELKKQWEIEEG 43 (70)
Q Consensus 21 paia~aAskai~Elkkqwe~eeg 43 (70)
-+|.+||.+.++|.|+|++..+|
T Consensus 563 ~AVg~aA~~mVeEVRRQFreipG 585 (730)
T PLN02277 563 AAVGRTAQEVVNEVRRQFAERPG 585 (730)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc
Confidence 47889999999999999998887
No 15
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=37.53 E-value=51 Score=17.97 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=21.7
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHHHHH
Q 035213 12 LQRLAKDSNPAIAAAASKTIFELKKQWEI 40 (70)
Q Consensus 12 LQRLAeDsnpaia~aAskai~Elkkqwe~ 40 (70)
.+.| .++.|.-+....+.+.+|.++|.-
T Consensus 64 ~~~L-~~~~~~~~~~i~~~~~~l~~~w~~ 91 (105)
T PF00435_consen 64 AQQL-IDSGPEDSDEIQEKLEELNQRWEA 91 (105)
T ss_dssp HHHH-HHTTHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHcCCCcHHHHHHHHHHHHHHHHH
Confidence 4567 666677778888889999999963
No 16
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=37.11 E-value=30 Score=29.71 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 035213 21 PAIAAAASKTIFELKKQWEIEEG 43 (70)
Q Consensus 21 paia~aAskai~Elkkqwe~eeg 43 (70)
-+|-+||.+.++|.|+|++..+|
T Consensus 506 ~AVg~aA~~mV~EVRrQFre~pG 528 (666)
T PRK00733 506 TAVGRAAGAMVEEVRRQFREIPG 528 (666)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc
Confidence 47889999999999999998887
No 17
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=35.42 E-value=36 Score=29.53 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 035213 21 PAIAAAASKTIFELKKQWEIEEG 43 (70)
Q Consensus 21 paia~aAskai~Elkkqwe~eeg 43 (70)
-+|.+||.+.++|.|+|++.-+|
T Consensus 531 ~AVg~aA~~mV~EVRRQFreipG 553 (697)
T TIGR01104 531 KSVGRAALKMVEEVRRQFNTIPG 553 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhCcc
Confidence 47889999999999999998877
No 18
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=33.14 E-value=45 Score=24.64 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=25.5
Q ss_pred ccchHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 035213 6 NAGMGALQRLAKDSNPAIAAAASKTIFELK 35 (70)
Q Consensus 6 NAGMGALQRLAeDsnpaia~aAskai~Elk 35 (70)
-+++--+++|..-|.+.+|++|.|++.|..
T Consensus 91 ~~~~~~l~~L~~ss~~pla~ia~K~~kEe~ 120 (237)
T TIGR02158 91 AYKVLLLEALTQSRDVPLAAIAAKALKEAR 120 (237)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 345556789999999999999999999986
No 19
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=32.35 E-value=78 Score=18.30 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhC
Q 035213 19 SNPAIAAAASKTIFELKKQWEIEEG 43 (70)
Q Consensus 19 snpaia~aAskai~Elkkqwe~eeg 43 (70)
.=|.+++...|+|.++|+-+.-..-
T Consensus 21 kLP~~~r~lG~~ir~fk~~~~~~~~ 45 (53)
T PF02416_consen 21 KLPELARSLGKAIREFKKAINEAKE 45 (53)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3488999999999999998875543
No 20
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=32.01 E-value=77 Score=16.12 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=22.6
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHHH
Q 035213 8 GMGALQRLAKDSNPAIAAAASKTIFEL 34 (70)
Q Consensus 8 GMGALQRLAeDsnpaia~aAskai~El 34 (70)
|+-.|=+|-.+.++.+-..|.-||..|
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 566677778899999999999998766
No 21
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=31.79 E-value=50 Score=28.36 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 035213 21 PAIAAAASKTIFELKKQWEIEEG 43 (70)
Q Consensus 21 paia~aAskai~Elkkqwe~eeg 43 (70)
.+|-++|.+-++|.|+|.+.-+|
T Consensus 531 ~aVg~aA~~mV~EvRrQFre~pg 553 (682)
T PF03030_consen 531 KAVGRAAGKMVEEVRRQFREIPG 553 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Confidence 47889999999999999999888
No 22
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=31.77 E-value=67 Score=15.36 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=21.9
Q ss_pred chHHHHHhhhcCCHHHHHHHHHHHHHH
Q 035213 8 GMGALQRLAKDSNPAIAAAASKTIFEL 34 (70)
Q Consensus 8 GMGALQRLAeDsnpaia~aAskai~El 34 (70)
|+-.|=.|...+++.+-..|..+|.-|
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 567777788888999999999888755
No 23
>PF03752 ALF: Short repeats of unknown function; InterPro: IPR005506 This set of repeats is found in a small family of secreted proteins of no known function, which may be involved in signal transduction.
Probab=29.64 E-value=85 Score=17.31 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.0
Q ss_pred HHHHhhhcCCHHHHHHHHHHH
Q 035213 11 ALQRLAKDSNPAIAAAASKTI 31 (70)
Q Consensus 11 ALQRLAeDsnpaia~aAskai 31 (70)
++-+|..+.-|.|-.+|.+|+
T Consensus 3 ~v~~l~~~gG~~vr~AA~~AL 23 (43)
T PF03752_consen 3 AVVQLLASGGPAVRAAAQAAL 23 (43)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 355788888999999999999
No 24
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=29.31 E-value=18 Score=27.45 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCceeEeccCCCCCCccc
Q 035213 20 NPAIAAAASKTIFELKKQWEIEEGDSWRFMMNPKPAEGEET 60 (70)
Q Consensus 20 npaia~aAskai~Elkkqwe~eegds~rf~m~~~~~~~~~~ 60 (70)
...+|||-|+++.+--+-=-+=+||-+||-+|...-=++++
T Consensus 44 KStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~d 84 (207)
T KOG0635|consen 44 KSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAED 84 (207)
T ss_pred chhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhh
Confidence 45789999999887666666678999999999776555443
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=28.18 E-value=74 Score=23.24 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.1
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHH
Q 035213 9 MGALQRLAKDSNPAIAAAASKTIFEL 34 (70)
Q Consensus 9 MGALQRLAeDsnpaia~aAskai~El 34 (70)
...|.+|-.|++|.|..+|..++.++
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHH
Confidence 45677888999999999999999999
No 26
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=27.88 E-value=77 Score=18.12 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 035213 19 SNPAIAAAASKTIFELKKQWE 39 (70)
Q Consensus 19 snpaia~aAskai~Elkkqwe 39 (70)
.=|.+++...|+|.+.|+--.
T Consensus 22 kLP~~~r~lG~~i~~fk~~~~ 42 (47)
T TIGR01411 22 KLPELGRDLGKAIKEFKKALK 42 (47)
T ss_pred HhHHHHHHHHHHHHHHHHHhh
Confidence 348899999999999998543
No 27
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=27.67 E-value=56 Score=23.99 Aligned_cols=32 Identities=34% Similarity=0.286 Sum_probs=26.2
Q ss_pred cccchHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 035213 5 GNAGMGALQRLAKDSNPAIAAAASKTIFELKK 36 (70)
Q Consensus 5 GNAGMGALQRLAeDsnpaia~aAskai~Elkk 36 (70)
.-++.--|+.|+.-|.+.+|+.|.|.+.|.+-
T Consensus 116 d~~~~~~l~~l~~ssy~pla~~a~k~~kEe~y 147 (263)
T PF05138_consen 116 DRAGKVLLEALADSSYEPLAAIAAKILKEEAY 147 (263)
T ss_dssp HHHHHHHHHHHTT-SBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 34566778999999999999999999999764
No 28
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=27.52 E-value=58 Score=28.60 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 035213 21 PAIAAAASKTIFELKKQWEIEEG 43 (70)
Q Consensus 21 paia~aAskai~Elkkqwe~eeg 43 (70)
-+|-+||.+.++|.|+|.+.-+|
T Consensus 594 ~AVg~aA~~mV~EVRRQFreipG 616 (765)
T PLN02255 594 KSVGSAALKMVEEVRRQFNTIPG 616 (765)
T ss_pred HHHHHHHHHHHHHHHHHHhhCcc
Confidence 47889999999999999998877
No 29
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=26.43 E-value=1.3e+02 Score=19.86 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=21.6
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHH
Q 035213 12 LQRLAKDSNPAIAAAASKTIFELKKQ 37 (70)
Q Consensus 12 LQRLAeDsnpaia~aAskai~Elkkq 37 (70)
+=++-.|+||.|...|...+.|+.+.
T Consensus 68 ~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 68 ILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 33566999999999999999998765
No 30
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=24.91 E-value=1.2e+02 Score=16.93 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=21.7
Q ss_pred HHHHHhhhcC-CHHHHHHHHHHHHHHHHH
Q 035213 10 GALQRLAKDS-NPAIAAAASKTIFELKKQ 37 (70)
Q Consensus 10 GALQRLAeDs-npaia~aAskai~Elkkq 37 (70)
-||+++++.+ ++.+.....+...+++.-
T Consensus 17 ~al~~~~~~~~~~~l~~~~~~~~~~l~~G 45 (124)
T PF00482_consen 17 EALEILAEESDSGPLREELQKIRRRLRNG 45 (124)
T ss_dssp HHHHHHCCC-SSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHcCCHHHHHHHHHHHHHHHcC
Confidence 4788999999 999988888888777543
No 31
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=24.67 E-value=1.4e+02 Score=16.61 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=19.5
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 035213 9 MGALQRLAKDSNPAIAAAASKTIFELK 35 (70)
Q Consensus 9 MGALQRLAeDsnpaia~aAskai~Elk 35 (70)
+..|-.+-.|+|+.+...|..++..|-
T Consensus 51 i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 51 LPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 344445556788888888888888773
No 32
>COG4022 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.67 E-value=58 Score=25.81 Aligned_cols=42 Identities=31% Similarity=0.349 Sum_probs=28.4
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHH-HHHHHhCCce-eEeccCCC
Q 035213 12 LQRLAKDSNPAIAAAASKTIFELKK-QWEIEEGDSW-RFMMNPKP 54 (70)
Q Consensus 12 LQRLAeDsnpaia~aAskai~Elkk-qwe~eegds~-rf~m~~~~ 54 (70)
.|+|.+-+.. |-.||||.|.|+-+ +--++.|-.. .|-+.|++
T Consensus 209 aq~l~~~~Di-VT~CASK~iR~~a~rr~i~qVgsaiP~falT~~G 252 (286)
T COG4022 209 AQGLVENSDI-VTSCASKYIRELAKRRPILQVGSAIPLFALTQKG 252 (286)
T ss_pred HHHHHhhhhH-HHHhhHHHHHHHhcCCceeeecccceeEEEcccc
Confidence 5889988876 45677999999866 4556666443 34454444
No 33
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=24.22 E-value=90 Score=19.58 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 035213 20 NPAIAAAASKTIFELKKQWE 39 (70)
Q Consensus 20 npaia~aAskai~Elkkqwe 39 (70)
=|.+++++.++|.+.|+...
T Consensus 25 LP~l~r~~G~~i~~fKk~~~ 44 (94)
T COG1826 25 LPEAGRDLGKAIREFKKAAS 44 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 38899999999999999664
No 34
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=23.71 E-value=93 Score=19.73 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 035213 20 NPAIAAAASKTIFELKKQW 38 (70)
Q Consensus 20 npaia~aAskai~Elkkqw 38 (70)
=|.++++.-|+|.++|+--
T Consensus 25 LPelgr~lGkair~FK~~~ 43 (73)
T PRK02958 25 LRNIGSDLGGAVKGFKDGM 43 (73)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3889999999999999843
No 35
>PF15142 INCA1: INCA1
Probab=23.63 E-value=44 Score=24.85 Aligned_cols=14 Identities=50% Similarity=0.755 Sum_probs=10.2
Q ss_pred HHHHHHHHH-HHHHH
Q 035213 28 SKTIFELKK-QWEIE 41 (70)
Q Consensus 28 skai~Elkk-qwe~e 41 (70)
-+.|+|||| ||-..
T Consensus 115 QriInElKkAqWG~s 129 (178)
T PF15142_consen 115 QRIINELKKAQWGSS 129 (178)
T ss_pred HHHHHHHHHhhcCCC
Confidence 368999987 88543
No 36
>smart00150 SPEC Spectrin repeats.
Probab=23.00 E-value=96 Score=16.86 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=17.6
Q ss_pred HHhhhcCCHHHHHHHHHHHHHHHHHHHH
Q 035213 13 QRLAKDSNPAIAAAASKTIFELKKQWEI 40 (70)
Q Consensus 13 QRLAeDsnpaia~aAskai~Elkkqwe~ 40 (70)
++|.....| -+......+.+|.++|+.
T Consensus 62 ~~L~~~~~~-~~~~i~~~~~~l~~~w~~ 88 (101)
T smart00150 62 EQLIEEGHP-DAEEIEERLEELNERWEE 88 (101)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHHHHH
Confidence 455555433 345566778999999974
No 37
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=22.99 E-value=1.8e+02 Score=17.44 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=17.9
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHH
Q 035213 12 LQRLAKDSNPAIAAAASKTIFELK 35 (70)
Q Consensus 12 LQRLAeDsnpaia~aAskai~Elk 35 (70)
+..|-..+||.|+..|+.-|..-|
T Consensus 47 v~~Lrkh~~~~I~~~A~~Li~~WK 70 (75)
T smart00509 47 VNGLRKHKNEEIRKLAKKLIKSWK 70 (75)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHH
Confidence 677888899999998876554433
No 38
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=22.33 E-value=82 Score=20.69 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=19.9
Q ss_pred hHHHHHhhhcCC--HHHHHHHHHHHHHHHH
Q 035213 9 MGALQRLAKDSN--PAIAAAASKTIFELKK 36 (70)
Q Consensus 9 MGALQRLAeDsn--paia~aAskai~Elkk 36 (70)
+--|+|+++|+. -+|-++|+.|+..|..
T Consensus 12 ~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~ 41 (85)
T PF03685_consen 12 IQMLERIINDTSVPRNIRRAAEEAKEILNN 41 (85)
T ss_dssp HHHHHHHHT-TTS-HHHHHHHHHHHHHCT-
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHhC
Confidence 345888998875 4788888888888754
No 39
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.32 E-value=47 Score=27.07 Aligned_cols=28 Identities=36% Similarity=0.580 Sum_probs=17.7
Q ss_pred cchHHHHHhhhcCCHHHHHHHHHHHHHHHHHHH
Q 035213 7 AGMGALQRLAKDSNPAIAAAASKTIFELKKQWE 39 (70)
Q Consensus 7 AGMGALQRLAeDsnpaia~aAskai~Elkkqwe 39 (70)
-|||.|||.|--+= -|+-+...|..+|.
T Consensus 113 r~mGVLQrIaL~yl-----fAal~v~~L~~r~q 140 (371)
T COG4299 113 RGMGVLQRIALAYL-----FAALLVRQLRGRWQ 140 (371)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHhcChHHH
Confidence 48999999875321 23444556666665
No 40
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=20.83 E-value=62 Score=20.02 Aligned_cols=16 Identities=13% Similarity=0.459 Sum_probs=10.0
Q ss_pred HHHhCCceeEeccCCC
Q 035213 39 EIEEGDSWRFMMNPKP 54 (70)
Q Consensus 39 e~eegds~rf~m~~~~ 54 (70)
.+.+|+++.|.++...
T Consensus 42 ~L~pGq~l~f~~d~~g 57 (85)
T PF04225_consen 42 RLKPGQTLEFQLDEDG 57 (85)
T ss_dssp G--TT-EEEEEE-TTS
T ss_pred hCCCCCEEEEEECCCC
Confidence 4789999999998764
No 41
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=20.32 E-value=1.4e+02 Score=18.62 Aligned_cols=21 Identities=19% Similarity=0.067 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 035213 20 NPAIAAAASKTIFELKKQWEI 40 (70)
Q Consensus 20 npaia~aAskai~Elkkqwe~ 40 (70)
=|.+++.+.++|.++|+.+.-
T Consensus 24 LP~~~r~~G~~i~~~r~~~~~ 44 (80)
T TIGR01410 24 LPVAIRAVGKFVRRLRGMASD 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHhhHh
Confidence 388999999999988887754
No 42
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=20.29 E-value=30 Score=26.43 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=34.9
Q ss_pred hHHHHHhhhcCCHHHHHHHHHH------HHHHHHHHHHHhCCceeEeccCC
Q 035213 9 MGALQRLAKDSNPAIAAAASKT------IFELKKQWEIEEGDSWRFMMNPK 53 (70)
Q Consensus 9 MGALQRLAeDsnpaia~aAska------i~Elkkqwe~eegds~rf~m~~~ 53 (70)
-+|++.++++.++.+|+-||+. +.-|.+-.+-++++.=||.+=.+
T Consensus 132 a~Aak~v~~~~~~~~AAIas~~aA~~YgL~il~~~I~D~~~N~TRF~vl~r 182 (279)
T COG0077 132 AEAAKLVAEGPDETVAAIASELAAELYGLDILAENIEDEPNNRTRFLVLSR 182 (279)
T ss_pred HHHHHHHHhCCCcCeeEEcCHHHHHHcCcHhHhhcccCCCCCeEEEEEEec
Confidence 4688889998888888777765 55667777778999999987654
No 43
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=20.15 E-value=1.5e+02 Score=19.34 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 035213 19 SNPAIAAAASKTIFELKKQWEI 40 (70)
Q Consensus 19 snpaia~aAskai~Elkkqwe~ 40 (70)
.=|.+++...|+|.++|+.+.-
T Consensus 26 KLP~lar~lGk~i~~fkk~~~~ 47 (90)
T PRK14857 26 KLPEIGRSLGKTLKGFQEASKE 47 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3488999999999999998763
No 44
>PF08518 GIT_SHD: Spa2 homology domain (SHD) of GIT; InterPro: IPR013724 GIT proteins are signalling integrators with GTPase-activating function which may be involved in the organisation of the cytoskeletal matrix assembled at active zones (CAZ). The function of the CAZ might be to define sites of neurotransmitter release. Mutations in the Spa2 homology domain (SHD) domain of GIT1 described here interfere with the association of GIT1 with Piccolo, beta-PIX, and focal adhesion kinase [].
Probab=20.06 E-value=1.7e+02 Score=15.97 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.4
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHH
Q 035213 12 LQRLAKDSNPAIAAAASKTIFELKKQ 37 (70)
Q Consensus 12 LQRLAeDsnpaia~aAskai~Elkkq 37 (70)
=|+|+.=|++...--++-..+|++++
T Consensus 2 RqKL~~Ls~~~F~eL~~DV~~E~~RR 27 (31)
T PF08518_consen 2 RQKLARLSNQRFEELATDVYDELDRR 27 (31)
T ss_pred cHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 47888889999999999999999875
No 45
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=20.02 E-value=1e+02 Score=23.85 Aligned_cols=32 Identities=31% Similarity=0.212 Sum_probs=27.3
Q ss_pred cccchHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 035213 5 GNAGMGALQRLAKDSNPAIAAAASKTIFELKK 36 (70)
Q Consensus 5 GNAGMGALQRLAeDsnpaia~aAskai~Elkk 36 (70)
--|++-.|-.|..-|-+-.|++|+|+|.|-.-
T Consensus 116 D~~~~~~l~~l~~ssy~PlA~~a~k~~kEe~f 147 (265)
T COG3396 116 DGAAIYQLEALADSSYGPLARAAQKICKEEEF 147 (265)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHHhHHH
Confidence 34677788899999999999999999998653
Done!