BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035220
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZKH0|TF2H5_CHICK General transcription factor IIH subunit 5 OS=Gallus gallus
GN=GTF2H5 PE=3 SV=1
Length = 71
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ S +KFII LD TH+FV + ++ + E
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAELVNFLQERVGEL 60
Query: 61 RDQNSY 66
DQNS+
Sbjct: 61 MDQNSF 66
>sp|Q6ZYL4|TF2H5_HUMAN General transcription factor IIH subunit 5 OS=Homo sapiens
GN=GTF2H5 PE=1 SV=1
Length = 71
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ S +KFII +D TH+FV + +++ + E
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60
Query: 61 RDQNSY 66
DQN++
Sbjct: 61 MDQNAF 66
>sp|Q2T9Z5|TF2H5_BOVIN General transcription factor IIH subunit 5 OS=Bos taurus
GN=GTF2H5 PE=3 SV=1
Length = 71
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ S +KFII +D TH+FV + +++ + E
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60
Query: 61 RDQNSY 66
DQN++
Sbjct: 61 MDQNAF 66
>sp|Q8K2X8|TF2H5_MOUSE General transcription factor IIH subunit 5 OS=Mus musculus
GN=Gtf2h5 PE=1 SV=1
Length = 71
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MVN +KG+ I CD M QF++ ++ + +KFII +D TH+FV + +++ + E
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDEANALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60
Query: 61 RDQNSY 66
DQN++
Sbjct: 61 MDQNAF 66
>sp|Q55CT8|TF2H5_DICDI General transcription factor IIH subunit 5 OS=Dictyostelium
discoideum GN=gtf2h5 PE=3 SV=1
Length = 72
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRS---AI 57
MV+ KGLF+ CD P QF+ + + + F + +LD THLF+Q ++I S I
Sbjct: 1 MVHVYKGLFLECDPPTKQFV----EYISKQEHFEVIVLDETHLFLQGGDEKVINSIQRRI 56
Query: 58 AEFRDQNSY 66
+ ++QN+Y
Sbjct: 57 DDLQNQNTY 65
>sp|Q6C1B5|TFB5_YARLI RNA polymerase II transcription factor B subunit 5 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB5 PE=3 SV=1
Length = 75
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A +G+ I CD + I+N+++S I+ LD THL + P+M E+++ + +
Sbjct: 1 MPKATRGVLIECDPSIKALIVNIDSS---QHNIILDELDDTHLMIHPSMVEVVKQKLNKM 57
Query: 61 RDQNSY 66
+N+Y
Sbjct: 58 LAENTY 63
>sp|Q4P985|TFB5_USTMA RNA polymerase II transcription factor B subunit 5 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=TFB5 PE=3 SV=2
Length = 62
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 2 VNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAI 57
+ A KG+ ++CD + Q I+ S+ + +FII LD THL + P+ + +R+ +
Sbjct: 1 MKAYKGMLLTCDAAVKQLIL----SLDERNRFIIMDLDETHLLISPDRIDWLRAEL 52
>sp|Q6FM86|TFB5_CANGA RNA polymerase II transcription factor B subunit 5 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB5 PE=3 SV=1
Length = 73
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
MV A +G+ + CD + I+ +++ + I+ LD THL V P E I+ +
Sbjct: 1 MVRARRGVLLKCDPSIKALIVQIDS---ERHDIILEELDETHLLVHPTKVEFIKMELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>sp|Q3E7C1|TFB5_YEAST RNA polymerase II transcription factor B subunit 5
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TFB5 PE=1 SV=1
Length = 72
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A KG + CD + I+ ++A M ++ LD THL V P+ E ++ +
Sbjct: 1 MARARKGALVQCDPSIKALILQIDAKMSD---IVLEELDDTHLLVNPSKVEFVKHELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>sp|Q6CTL5|TFB5_KLULA RNA polymerase II transcription factor B subunit 5
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TFB5
PE=3 SV=2
Length = 72
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A KG + CD + I+ M+A I LD THL V P+ E I+ +
Sbjct: 1 MTRARKGTLVQCDPSIRALILRMDAD---RNDIIYEELDDTHLLVDPSKVEFIKYELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSENIY 63
>sp|P0C0X3|TFB5_CANAL RNA polymerase II transcription factor B subunit 5 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=TFB5 PE=3
SV=1
Length = 69
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M+ A KG+ + CD + II +++S S I+ LD THL +Q + ++S +
Sbjct: 1 MLVASKGVLVQCDPSIKALIIQIDSS---SSGIILEELDETHLLIQHDKVNFVKSELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>sp|Q9HDW3|TFB5_SCHPO RNA polymerase II transcription factor B subunit 5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb5 PE=3 SV=1
Length = 68
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 1 MVNAIKGLF-ISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAE 59
M A KGL + CD + Q I+NM+ QS +I +D L V + E +++ +
Sbjct: 1 MPRAQKGLLLVECDPTVKQLILNMDE---QSPGIVIEEIDEERLLVNESRLEQVKAELER 57
Query: 60 FRDQNSYE 67
++N+Y+
Sbjct: 58 RLEENTYQ 65
>sp|Q4HYI0|TFB5_GIBZE RNA polymerase II transcription factor B subunit 5 OS=Gibberella
zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL
31084) GN=TFB5 PE=3 SV=3
Length = 71
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M AI+G+ I CD + I++++++ + +II LD + V+ NM M+++ + +
Sbjct: 1 MPRAIRGVLIECDPSIKSIIVSIDSA---NHDYIIEDLDDERVVVKENMVSMLKAKLEDR 57
Query: 61 RDQN 64
+N
Sbjct: 58 LKEN 61
>sp|Q6BVH4|TFB5_DEBHA RNA polymerase II transcription factor B subunit 5
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=TFB5 PE=3 SV=2
Length = 69
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M +AIKG+ + CD + I+ +++ + +I LD THL + N + +++ +
Sbjct: 1 MPSAIKGVMVQCDPSIKALILKIDS---ERHDIVIEELDETHLVIDSNKVQAVKNELNRL 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>sp|Q74ZQ0|TFB5_ASHGO RNA polymerase II transcription factor B subunit 5 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB5 PE=3 SV=1
Length = 72
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M A KG + CD + I+ +++ + I LD THL V P I+ + F
Sbjct: 1 MPRARKGALVQCDPSIRALILQIDSG---THDIIWEELDETHLLVDPAKVSYIKEKLNWF 57
Query: 61 RDQNSY 66
+N Y
Sbjct: 58 LSKNIY 63
>sp|Q8X0V0|TFB5_NEUCR RNA polymerase II transcription factor B subunit 5 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=tfb-5 PE=3 SV=1
Length = 72
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
M AI+G+ I C+ + I+++++ + II LD L V+ NM ++++ + E
Sbjct: 1 MPRAIRGVLIQCEPAIKSIIVHLDSV---NNDIIIEDLDEQTLVVKENMVQLLKQKL-ED 56
Query: 61 RDQNSY--EKP 69
R + +Y E+P
Sbjct: 57 RLKETYRPEEP 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,482,930
Number of Sequences: 539616
Number of extensions: 583983
Number of successful extensions: 1544
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1531
Number of HSP's gapped (non-prelim): 16
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)