BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035229
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2
SV=2
Length = 394
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPAR-KWRTEENQMNKIVFIGHHLNQDILQ 59
M+V R KG++S+K Q +Q + E+YE+ +R W+ + + ++VFIG +L++DILQ
Sbjct: 309 MEVIRLKGLVSIKDKPQQMIVQGIHELYELEESRVNWKDDAERACQLVFIGKNLDKDILQ 368
Query: 60 DSLRTCTLAT 69
T T
Sbjct: 369 QLFITAVAET 378
>sp|Q5RIA9|CBWD5_HUMAN COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1
Length = 395
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEI--VPARKWRTEENQMNKIVFIGHHLNQDIL 58
M+V R KG++S+K Q +Q V E+Y++ P W+ + + N++V IG +L++DIL
Sbjct: 311 MEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPV-SWKDDTERTNRLVLIGRNLDKDIL 369
Query: 59 Q 59
+
Sbjct: 370 K 370
>sp|Q5JTY5|CBWD3_HUMAN COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1
Length = 395
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEI--VPARKWRTEENQMNKIVFIGHHLNQDIL 58
M+V R KG++S+K Q +Q V E+Y++ P W+ + + N++V IG +L++DIL
Sbjct: 311 MEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPV-SWKDDTERTNRLVLIGRNLDKDIL 369
Query: 59 Q 59
+
Sbjct: 370 K 370
>sp|A6NM15|CBWD7_HUMAN Putative COBW domain-containing protein 7 OS=Homo sapiens GN=CBWD7
PE=5 SV=3
Length = 247
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEI--VPARKWRTEENQMNKIVFIGHHLNQDIL 58
M+V R KG++S+K Q +Q V E+Y++ P W+ + + N++V IG +L++DIL
Sbjct: 163 MEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPV-SWKDDTERTNRLVLIGRNLDKDIL 221
Query: 59 Q 59
+
Sbjct: 222 K 222
>sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1
Length = 393
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPAR-KWRTEENQMNKIVFIGHHLNQDILQ 59
M+V R KG++S+K Q +Q + E+Y++ + W+ + + ++VFIG +L++D+LQ
Sbjct: 308 MEVIRLKGLVSIKDKPQQMIVQGIHELYDLEESLVNWKDDAERACQLVFIGRNLDKDVLQ 367
>sp|Q9BRT8|CBWD1_HUMAN COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1
Length = 395
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEI--VPARKWRTEENQMNKIVFIGHHLNQDIL 58
M+V R KG++S+K Q +Q V E+Y++ P W+ + + N++V +G +L++DIL
Sbjct: 311 MEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPV-SWKDDTERTNRLVLLGRNLDKDIL 369
Query: 59 Q 59
+
Sbjct: 370 K 370
>sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1
Length = 395
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEI--VPARKWRTEENQMNKIVFIGHHLNQDIL 58
M+V R KG++S+K Q +Q V E+Y++ P W+ + + N++V +G +L++DIL
Sbjct: 311 MEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPV-SWKDDTERTNRLVLLGRNLDKDIL 369
Query: 59 Q 59
+
Sbjct: 370 K 370
>sp|Q4V339|CBWD6_HUMAN COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1
Length = 395
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1 MDVYRCKGVLSVKHSDQLHTLQAVREI--YEIVPARKWRTEENQMNKIVFIGHHLNQDIL 58
M+V R KG++S+K Q +Q V E+ E P W+ + + N++V IG +L++DIL
Sbjct: 311 MEVIRLKGLVSIKDKSQQVIVQGVHELCDLEETPV-SWKDDTERTNRLVLIGRNLDKDIL 369
Query: 59 Q 59
+
Sbjct: 370 K 370
>sp|Q9HZQ2|COBW_PSEAE Protein CobW OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 /
1C / PRS 101 / LMG 12228) GN=cobW PE=3 SV=1
Length = 375
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 2 DVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDS 61
D+ R KG ++ +Q V + ++ RKW +E + ++V IG L+Q + +
Sbjct: 310 DILRIKGFAAIPGKPMRLLVQGVGKRFDRHFDRKWLADEARSTRLVVIGQELDQAAIANQ 369
Query: 62 LRT 64
LRT
Sbjct: 370 LRT 372
>sp|O74310|YOG5_SCHPO COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC15D4.05 PE=3 SV=1
Length = 411
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 3 VYRCKGVLSVKHSDQLHTLQAVREIYEIVP-ARKWRT--EENQMNKIVFIGHHLNQ 55
+YR KG+ + K + Q VRE++EI+P + K R E++ +I+ IG +L++
Sbjct: 348 IYRSKGIFN-KDDGSWYIFQGVREVFEIMPLSEKPRAFLEKDIHPEIILIGRNLHR 402
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,100,413
Number of Sequences: 539616
Number of extensions: 710376
Number of successful extensions: 1855
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1839
Number of HSP's gapped (non-prelim): 10
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)