Query 035229
Match_columns 70
No_of_seqs 123 out of 1031
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 16:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nij_A Hypothetical protein YJ 99.7 9.7E-17 3.3E-21 105.4 7.1 65 2-67 254-318 (318)
2 4h62_V Mediator of RNA polymer 67.4 2.4 8.3E-05 18.2 1.1 16 52-67 8-23 (31)
3 2lxi_A RNA-binding protein 10; 57.3 12 0.0004 19.3 3.0 22 45-66 2-26 (91)
4 2la6_A RNA-binding protein FUS 56.3 19 0.00065 18.5 4.2 26 41-66 10-38 (99)
5 2cpd_A Apobec-1 stimulating pr 52.7 22 0.00076 18.2 4.3 24 42-65 13-39 (99)
6 2xnq_A Nuclear polyadenylated 51.1 23 0.00078 18.3 3.5 25 41-65 19-47 (97)
7 3r27_A HnRNP L, heterogeneous 46.6 29 0.00099 18.7 3.5 25 42-66 19-46 (100)
8 1wex_A Hypothetical protein (r 43.8 36 0.0012 18.1 3.6 24 42-65 13-39 (104)
9 2bz2_A Negative elongation fac 43.3 30 0.001 18.8 3.3 24 42-65 37-61 (121)
10 2dgp_A Bruno-like 4, RNA bindi 42.6 35 0.0012 17.5 3.8 24 42-65 11-37 (106)
11 1fjc_A Nucleolin RBD2, protein 41.3 35 0.0012 17.2 3.8 25 41-65 13-40 (96)
12 2ytc_A PRE-mRNA-splicing facto 41.2 33 0.0011 16.8 3.1 24 42-65 10-36 (85)
13 2cqc_A Arginine/serine-rich sp 40.5 35 0.0012 17.1 3.2 24 42-65 13-39 (95)
14 2dgs_A DAZ-associated protein 40.4 37 0.0013 17.2 3.7 24 42-65 8-34 (99)
15 2raq_A Conserved protein MTH88 39.4 38 0.0013 18.7 3.2 24 42-65 49-72 (97)
16 2ad9_A Polypyrimidine tract-bi 39.1 37 0.0013 18.8 3.3 25 42-66 29-56 (119)
17 2dgt_A RNA-binding protein 30; 38.6 39 0.0013 16.9 4.1 24 42-65 8-34 (92)
18 2x3d_A SSO6206; unknown functi 38.4 44 0.0015 18.4 3.4 24 42-65 48-71 (96)
19 2l1t_A Uncharacterized protein 38.4 38 0.0013 19.0 3.2 28 2-29 75-102 (109)
20 2cq0_A Eukaryotic translation 37.6 34 0.0012 17.5 2.9 24 42-65 13-39 (103)
21 2cph_A RNA binding motif prote 37.2 44 0.0015 17.1 3.7 24 42-65 13-39 (107)
22 1x4a_A Splicing factor, argini 37.2 45 0.0015 17.3 4.4 24 42-65 20-46 (109)
23 1x5u_A Splicing factor 3B subu 37.0 44 0.0015 17.1 4.1 24 42-65 13-39 (105)
24 2cqi_A Nucleolysin TIAR; RNA r 36.8 44 0.0015 17.1 3.5 24 42-65 13-39 (103)
25 3s8s_A Histone-lysine N-methyl 36.7 47 0.0016 17.7 3.4 22 44-65 6-30 (110)
26 2rs2_A Musashi-1, RNA-binding 35.6 31 0.001 18.2 2.5 25 41-65 22-49 (109)
27 3s7r_A Heterogeneous nuclear r 35.5 43 0.0015 16.5 3.1 23 43-65 10-35 (87)
28 2e5h_A Zinc finger CCHC-type a 35.4 36 0.0012 17.0 2.7 24 42-65 14-40 (94)
29 2khc_A Testis-specific RNP-typ 35.4 51 0.0017 17.3 3.7 24 42-65 38-64 (118)
30 2cq1_A PTB-like protein L; RRM 35.3 34 0.0012 18.1 2.6 24 42-65 13-39 (101)
31 4f25_A Polyadenylate-binding p 35.3 44 0.0015 17.7 3.1 20 47-66 8-30 (115)
32 2cpz_A CUG triplet repeat RNA- 35.2 51 0.0017 17.2 3.4 24 42-65 23-49 (115)
33 2jrs_A RNA-binding protein 39; 34.7 52 0.0018 17.3 3.8 24 42-65 24-50 (108)
34 2fc9_A NCL protein; structure 34.6 42 0.0014 17.1 2.9 24 42-65 13-39 (101)
35 1vcc_A DNA topoisomerase I; DN 34.5 8.3 0.00028 20.3 0.0 12 41-52 52-63 (77)
36 1x4h_A RNA-binding protein 28; 34.0 45 0.0015 17.2 3.0 24 42-65 13-39 (111)
37 2dnz_A Probable RNA-binding pr 33.7 48 0.0016 16.5 3.4 22 44-65 5-29 (95)
38 2ywk_A Putative RNA-binding pr 33.6 48 0.0017 16.5 3.6 24 42-65 14-40 (95)
39 3mdf_A Peptidyl-prolyl CIS-tra 33.4 46 0.0016 16.2 3.5 23 43-65 6-31 (85)
40 2cqd_A RNA-binding region cont 33.3 55 0.0019 17.1 3.6 24 42-65 15-41 (116)
41 2dgw_A Probable RNA-binding pr 33.2 49 0.0017 16.5 3.8 23 43-65 9-34 (91)
42 2cpy_A RNA-binding protein 12; 32.8 58 0.002 17.1 3.3 24 42-65 13-39 (114)
43 2cpf_A RNA binding motif prote 32.6 45 0.0015 16.8 2.8 22 44-65 5-29 (98)
44 2hzc_A Splicing factor U2AF 65 32.1 49 0.0017 16.2 3.4 24 42-65 4-30 (87)
45 2dnp_A RNA-binding protein 14; 32.1 51 0.0018 16.4 3.0 23 43-65 8-33 (90)
46 1wf0_A TDP-43, TAR DNA-binding 32.0 50 0.0017 16.3 2.9 22 44-65 5-29 (88)
47 2dnm_A SRP46 splicing factor; 31.9 55 0.0019 16.7 3.7 24 42-65 11-37 (103)
48 1sjq_A Polypyrimidine tract-bi 31.7 48 0.0016 18.0 2.9 24 42-65 14-40 (105)
49 3lqv_A PRE-mRNA branch site pr 31.5 59 0.002 16.9 3.3 23 43-65 7-32 (115)
50 2err_A Ataxin-2-binding protei 31.5 60 0.002 17.0 3.7 25 42-66 27-54 (109)
51 1u6f_A Tcubp1, RNA-binding pro 31.4 65 0.0022 17.4 4.0 25 41-65 39-66 (139)
52 3v7e_A Ribosome-associated pro 31.4 57 0.002 16.7 3.1 16 43-58 27-42 (82)
53 1why_A Hypothetical protein ri 30.7 51 0.0018 16.6 2.8 22 44-65 17-41 (97)
54 3hid_A Adenylosuccinate synthe 30.6 99 0.0034 21.3 4.8 52 9-65 31-87 (432)
55 1x4e_A RNA binding motif, sing 30.5 39 0.0014 16.5 2.3 22 44-65 5-29 (85)
56 1l3k_A Heterogeneous nuclear r 30.3 75 0.0026 17.8 3.7 25 41-65 10-37 (196)
57 4fxv_A ELAV-like protein 1; RN 30.2 54 0.0018 17.0 2.9 20 46-65 21-43 (99)
58 1p1t_A Cleavage stimulation fa 30.1 35 0.0012 17.4 2.1 24 42-65 6-32 (104)
59 3bpd_A Uncharacterized protein 29.9 37 0.0013 18.8 2.2 24 42-65 49-72 (100)
60 2cpe_A RNA-binding protein EWS 29.9 63 0.0022 16.7 4.3 25 42-66 13-40 (113)
61 2ek1_A RNA-binding protein 12; 29.8 57 0.002 16.2 3.0 24 42-65 13-39 (95)
62 2dng_A Eukaryotic translation 29.8 61 0.0021 16.5 3.7 24 42-65 13-39 (103)
63 2xs2_A Deleted in azoospermia- 29.7 61 0.0021 16.5 3.9 24 42-65 7-33 (102)
64 2cqb_A Peptidyl-prolyl CIS-tra 29.5 61 0.0021 16.4 3.1 23 43-65 11-36 (102)
65 2dgv_A HnRNP M, heterogeneous 29.5 57 0.002 16.1 3.5 23 43-65 7-32 (92)
66 2dgu_A Heterogeneous nuclear r 29.4 59 0.002 16.6 2.9 23 43-65 10-35 (103)
67 1h2v_Z 20 kDa nuclear CAP bind 29.4 77 0.0026 17.5 3.8 24 42-65 37-63 (156)
68 2hgm_A HNRPF protein, heteroge 29.0 60 0.0021 18.0 3.1 24 42-65 40-66 (126)
69 3ff5_A PEX14P, peroxisomal bio 28.8 34 0.0011 16.8 1.7 24 42-65 30-54 (54)
70 3ff1_A Glucose-6-phosphate iso 28.6 52 0.0018 22.6 3.2 26 44-69 109-134 (446)
71 2x1f_A MRNA 3'-END-processing 28.5 63 0.0021 16.2 3.0 21 45-65 3-26 (96)
72 1wg5_A Heterogeneous nuclear r 28.4 67 0.0023 16.6 4.0 25 42-66 13-40 (104)
73 3bs9_A Nucleolysin TIA-1 isofo 28.4 58 0.002 15.8 3.6 22 44-65 6-30 (87)
74 1oo0_B CG8781-PA, drosophila Y 28.3 67 0.0023 16.5 4.2 24 42-65 24-50 (110)
75 2dgo_A Cytotoxic granule-assoc 28.2 69 0.0024 16.6 4.3 25 41-65 12-39 (115)
76 2cq3_A RNA-binding protein 9; 28.2 65 0.0022 16.4 4.2 25 41-65 12-39 (103)
77 2e5j_A Methenyltetrahydrofolat 28.1 64 0.0022 16.3 3.7 25 42-66 17-44 (97)
78 2la4_A Nuclear and cytoplasmic 28.0 65 0.0022 16.3 3.4 23 43-65 26-51 (101)
79 1s79_A Lupus LA protein; RRM, 28.0 71 0.0024 16.7 3.2 24 42-65 9-35 (103)
80 2fy1_A RNA-binding motif prote 27.8 74 0.0025 16.9 3.4 22 44-65 7-31 (116)
81 3qhp_A Type 1 capsular polysac 27.6 70 0.0024 17.3 3.2 23 42-64 31-53 (166)
82 3it4_B Arginine biosynthesis b 27.4 43 0.0015 20.8 2.4 23 45-67 2-26 (205)
83 2jvo_A Nucleolar protein 3; nu 27.3 67 0.0023 16.9 3.0 25 42-66 29-56 (108)
84 2db1_A Heterogeneous nuclear r 27.1 73 0.0025 17.0 3.1 25 42-66 15-42 (118)
85 2do4_A Squamous cell carcinoma 27.1 68 0.0023 16.2 3.1 23 43-65 16-41 (100)
86 1nz0_A Ribonuclease P protein 26.9 77 0.0026 17.3 3.2 25 43-67 82-114 (118)
87 2dnh_A Bruno-like 5, RNA bindi 26.8 70 0.0024 16.3 3.6 24 42-65 13-39 (105)
88 2kxn_B Transformer-2 protein h 26.6 39 0.0013 18.5 1.9 24 42-65 44-70 (129)
89 1vra_B Arginine biosynthesis b 26.6 45 0.0015 20.9 2.4 23 45-67 2-26 (215)
90 2do0_A HnRNP M, heterogeneous 26.4 64 0.0022 16.7 2.8 23 43-65 14-39 (114)
91 1whw_A Hypothetical protein ri 26.3 70 0.0024 16.1 3.6 24 42-65 6-32 (99)
92 1p9b_A Adenylosuccinate synthe 26.2 1.2E+02 0.004 21.1 4.5 52 9-65 43-99 (442)
93 2div_A TRNA selenocysteine ass 26.1 71 0.0024 16.0 3.3 24 43-66 8-34 (99)
94 2mss_A Protein (musashi1); RNA 25.8 62 0.0021 15.3 2.9 19 47-65 2-23 (75)
95 2cq4_A RNA binding motif prote 25.7 50 0.0017 17.2 2.3 24 42-65 23-49 (114)
96 2cpj_A Non-POU domain-containi 25.6 73 0.0025 16.1 3.6 24 42-65 13-39 (99)
97 1x4c_A Splicing factor, argini 25.5 78 0.0027 16.4 4.1 24 43-66 14-40 (108)
98 1fje_B Nucleolin RBD12, protei 25.3 93 0.0032 17.1 5.0 41 25-65 80-123 (175)
99 1fj7_A Nucleolin RBD1, protein 25.3 75 0.0026 16.1 3.5 24 43-66 16-42 (101)
100 2dnq_A RNA-binding protein 4B; 25.3 71 0.0024 15.8 3.9 23 43-65 7-32 (90)
101 3me7_A Putative uncharacterize 25.3 80 0.0027 17.7 3.2 21 48-68 143-163 (170)
102 3ex7_B RNA-binding protein 8A; 25.1 84 0.0029 16.6 4.0 24 42-65 20-46 (126)
103 2cpx_A Hypothetical protein FL 25.0 73 0.0025 16.5 2.9 23 43-65 24-49 (115)
104 3ulh_A THO complex subunit 4; 24.5 79 0.0027 16.1 3.8 24 42-65 27-53 (107)
105 2cqh_A IGF-II mRNA-binding pro 24.2 76 0.0026 15.7 2.8 23 44-66 8-33 (93)
106 1x4g_A Nucleolysin TIAR; struc 24.2 83 0.0028 16.2 3.2 23 43-65 24-49 (109)
107 2v4i_B Glutamate N-acetyltrans 24.0 54 0.0018 20.5 2.4 23 45-67 2-26 (213)
108 1iqt_A AUF1, heterogeneous nuc 24.0 68 0.0023 15.1 2.5 19 47-65 2-23 (75)
109 1x5t_A Splicing factor 3B subu 23.9 77 0.0026 15.7 3.4 22 44-65 5-29 (96)
110 1whx_A Hypothetical protein ri 23.9 88 0.003 16.4 3.8 25 41-65 7-34 (111)
111 2dhg_A TRNA selenocysteine ass 23.8 79 0.0027 16.0 2.8 21 44-64 9-32 (104)
112 3r7t_A Adenylosuccinate synthe 23.8 1.1E+02 0.0037 21.1 4.0 52 9-65 34-90 (419)
113 1x5s_A Cold-inducible RNA-bind 23.7 81 0.0028 15.9 3.4 24 42-65 10-36 (102)
114 2lea_A Serine/arginine-rich sp 23.7 73 0.0025 17.5 2.8 25 41-65 44-71 (135)
115 2lmi_A GRSF-1, G-rich sequence 23.5 71 0.0024 16.6 2.6 25 42-66 9-36 (107)
116 3gf6_A Uncharacterized bacteri 23.3 92 0.0032 18.9 3.2 22 4-27 116-137 (224)
117 1uaw_A Mouse-musashi-1; RNP-ty 22.8 65 0.0022 15.2 2.2 19 47-65 3-24 (77)
118 2ljp_A Ribonuclease P protein 22.8 55 0.0019 18.0 2.1 24 43-66 82-109 (119)
119 2hgl_A HNRPF protein, heteroge 22.7 1E+02 0.0036 17.1 3.3 25 42-66 42-69 (136)
120 4av2_M PILP protein, type IV p 22.7 1.3E+02 0.0045 18.0 5.5 30 3-33 94-123 (181)
121 2apj_A Putative esterase; AT4G 22.3 35 0.0012 21.5 1.3 14 4-17 150-163 (260)
122 2m2b_A RNA-binding protein 10; 22.2 1E+02 0.0035 16.5 3.2 25 42-66 21-48 (131)
123 2dh8_A DAZ-associated protein 22.0 68 0.0023 16.4 2.3 24 42-65 14-40 (105)
124 2d9p_A Polyadenylate-binding p 21.9 90 0.0031 15.8 3.0 23 43-65 14-39 (103)
125 2cq2_A Hypothetical protein LO 21.9 93 0.0032 17.1 2.9 23 44-66 25-52 (114)
126 1p27_B RNA-binding protein 8A; 21.8 92 0.0031 15.8 4.3 24 42-65 21-47 (106)
127 2kl5_A Uncharacterized protein 21.7 22 0.00074 20.1 0.2 9 3-11 57-65 (110)
128 3p5t_L Cleavage and polyadenyl 21.7 73 0.0025 15.8 2.3 20 47-66 4-26 (90)
129 1wez_A HnRNP H', FTP-3, hetero 21.6 68 0.0023 16.7 2.3 24 42-65 13-39 (102)
130 2cqp_A RNA-binding protein 12; 21.5 90 0.0031 15.6 4.2 24 42-65 13-39 (98)
131 2jwn_A Embryonic polyadenylate 21.4 95 0.0032 16.3 2.9 23 43-65 35-60 (124)
132 2d7u_A Adenylosuccinate synthe 21.3 1.5E+02 0.0052 19.8 4.3 23 43-65 64-88 (339)
133 3ns6_A Eukaryotic translation 21.3 45 0.0015 17.2 1.4 22 44-65 6-36 (100)
134 1x4b_A Heterogeneous nuclear r 21.2 93 0.0032 16.2 2.8 24 42-65 25-51 (116)
135 1wi8_A EIF-4B, eukaryotic tran 21.0 96 0.0033 15.7 3.7 23 43-65 14-39 (104)
136 1wel_A RNA-binding protein 12; 20.8 89 0.0031 16.6 2.7 24 43-66 24-50 (124)
137 3ucg_A Polyadenylate-binding p 20.8 88 0.003 15.2 3.1 22 44-65 6-30 (89)
138 2cjk_A Nuclear polyadenylated 20.7 99 0.0034 16.8 2.9 22 44-65 3-27 (167)
139 2cqg_A TDP-43, TAR DNA-binding 20.6 97 0.0033 15.7 4.0 23 43-65 14-39 (103)
140 3d2w_A TAR DNA-binding protein 20.6 96 0.0033 15.6 3.1 23 44-66 11-36 (89)
141 2kt5_A RNA and export factor-b 20.5 1.1E+02 0.0037 16.1 4.0 24 42-65 33-59 (124)
142 4a8x_A RNA-binding protein wit 20.4 88 0.003 15.1 2.9 21 45-65 5-28 (88)
143 2jvr_A Nucleolar protein 3; RN 20.4 1.1E+02 0.0039 16.3 3.4 24 43-66 27-53 (111)
144 2j76_E EIF-4B, EIF4B, eukaryot 20.4 31 0.0011 17.8 0.7 25 41-65 16-43 (100)
145 2hvz_A Splicing factor, argini 20.3 98 0.0034 15.6 2.7 19 47-65 3-24 (101)
No 1
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.68 E-value=9.7e-17 Score=105.44 Aligned_cols=65 Identities=23% Similarity=0.415 Sum_probs=57.4
Q ss_pred ceEEeeEEEEeccCCceEEEEccceEEEeecCCCCCccCCccceEEEEeCCCCHHHHHHHHhhccc
Q 035229 2 DVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDSLRTCTL 67 (70)
Q Consensus 2 ~vlR~KGiv~~~~~~~~~~~q~V~~~~~~~~~~~~~~~~~~~~~lVfIG~~ld~~~l~~~l~~~~~ 67 (70)
+|+|+||++|+++++.+++||+|+..++.....+|+ .+++.++|||||+++|++.|++.|++|+.
T Consensus 254 ~v~R~KG~~~~~~~~~~~~~~gv~~~~~~~~~~~~~-~~~~~~~lv~Ig~~ld~~~l~~~l~~~l~ 318 (318)
T 1nij_A 254 KLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWG-DEKPHSTMVFIGIQLPEEEIRAAFAGLRK 318 (318)
T ss_dssp TEEEEEEEECBTTCSEEEEEEEETTEEEEEEEEECT-TSCCCEEEEEEEESCCHHHHHHHHHTTCC
T ss_pred CEEEeeeEEEeCCCCcEEEEECCccEEeccccccCC-CCCCceEEEEEcCCCCHHHHHHHHHHHhC
Confidence 699999999999888899999999999876556685 34678999999999999999999999973
No 2
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=67.35 E-value=2.4 Score=18.24 Aligned_cols=16 Identities=13% Similarity=0.470 Sum_probs=12.6
Q ss_pred CCCHHHHHHHHhhccc
Q 035229 52 HLNQDILQDSLRTCTL 67 (70)
Q Consensus 52 ~ld~~~l~~~l~~~~~ 67 (70)
..|.++|++.|+.|..
T Consensus 8 rfdekqieelldncie 23 (31)
T 4h62_V 8 RFDEKQIEELLDNCIE 23 (31)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 3789999999999974
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=57.30 E-value=12 Score=19.31 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=17.8
Q ss_pred eEEEEe---CCCCHHHHHHHHhhcc
Q 035229 45 KIVFIG---HHLNQDILQDSLRTCT 66 (70)
Q Consensus 45 ~lVfIG---~~ld~~~l~~~l~~~~ 66 (70)
..|||+ .+.+.++|++.|..+-
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 568887 4689999999998764
No 4
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=56.27 E-value=19 Score=18.47 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=19.8
Q ss_pred CccceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 41 NQMNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 41 ~~~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
++.+.-++||. +.+.++|++.|..+-
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 38 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIG 38 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 34456788884 689999999998764
No 5
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.66 E-value=22 Score=18.19 Aligned_cols=24 Identities=8% Similarity=0.379 Sum_probs=19.5
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-+|||. +++.++|++.|..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~ 39 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNI 39 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTT
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4567899984 68899999999877
No 6
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=51.14 E-value=23 Score=18.33 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=19.4
Q ss_pred CccceEEEEe---C-CCCHHHHHHHHhhc
Q 035229 41 NQMNKIVFIG---H-HLNQDILQDSLRTC 65 (70)
Q Consensus 41 ~~~~~lVfIG---~-~ld~~~l~~~l~~~ 65 (70)
.+.++-|||| . +.+.++|++.|..+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~ 47 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY 47 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc
Confidence 3456778888 2 78889999999876
No 7
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=46.58 E-value=29 Score=18.74 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=20.1
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
+.++.++||. +.+.++|++.|..+-
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG 46 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFG 46 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccC
Confidence 4578999994 688999999998763
No 8
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=43.83 E-value=36 Score=18.11 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=19.0
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+.++.||||. +...++|++.|..+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~f 39 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKF 39 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 4567899985 57889999998765
No 9
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=43.28 E-value=30 Score=18.83 Aligned_cols=24 Identities=4% Similarity=0.271 Sum_probs=18.2
Q ss_pred ccceEEEEeC-CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH-HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~-~ld~~~l~~~l~~~ 65 (70)
..+.-||||. +++.++|++.|..+
T Consensus 37 ~~~~~lfVgnl~~te~~L~~~F~~~ 61 (121)
T 2bz2_A 37 RKGNTLYVYGEDMTPTLLRGAFSPF 61 (121)
T ss_dssp CCCCEEEEECSSCCHHHHHHHHSTT
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHcc
Confidence 3456678874 67889999999876
No 10
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=42.58 E-value=35 Score=17.54 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=18.9
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..+
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 37 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEF 37 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4456789984 68899999999876
No 11
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=41.30 E-value=35 Score=17.18 Aligned_cols=25 Identities=8% Similarity=0.292 Sum_probs=19.5
Q ss_pred CccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 41 NQMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 41 ~~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.+.++-||||. +.+.++|++.|..+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~ 40 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA 40 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC
Confidence 34567789984 68999999999876
No 12
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.17 E-value=33 Score=16.81 Aligned_cols=24 Identities=8% Similarity=0.288 Sum_probs=18.0
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-+|||. +.+.++|++.|..+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~ 36 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQF 36 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTT
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhC
Confidence 3456688873 68889999998776
No 13
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.54 E-value=35 Score=17.06 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=18.3
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +.+.++|++.|..+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~ 39 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKY 39 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 4456788873 67889999999876
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.44 E-value=37 Score=17.23 Aligned_cols=24 Identities=13% Similarity=0.365 Sum_probs=18.4
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 34 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKF 34 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3446788884 68999999998876
No 15
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=39.36 E-value=38 Score=18.68 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.1
Q ss_pred ccceEEEEeCCCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGHHLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~~ld~~~l~~~l~~~ 65 (70)
..-++++=|.|||-+++++.++..
T Consensus 49 e~lkitiEG~~id~d~I~~~IE~~ 72 (97)
T 2raq_A 49 ENIKVTIQGNDLDFDEITRAIESY 72 (97)
T ss_dssp EEEEEEEECSSCCHHHHHHHHHHT
T ss_pred cEEEEEEEecCCCHHHHHHHHHHc
Confidence 345788889999999999998764
No 16
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.14 E-value=37 Score=18.80 Aligned_cols=25 Identities=4% Similarity=0.017 Sum_probs=19.5
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
+.++.||||. +.+.++|++.|..+-
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG 56 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFG 56 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4567899994 678899999988763
No 17
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.63 E-value=39 Score=16.93 Aligned_cols=24 Identities=8% Similarity=0.238 Sum_probs=18.8
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +.+.++|++.|..+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~ 34 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEY 34 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4457788884 68899999998875
No 18
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=38.37 E-value=44 Score=18.35 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=20.0
Q ss_pred ccceEEEEeCCCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGHHLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~~ld~~~l~~~l~~~ 65 (70)
..-++++=|.|+|-+++++.++..
T Consensus 48 e~lkItIEG~~idfd~I~~~IE~~ 71 (96)
T 2x3d_A 48 MGLMIIIEGTSLNFDDIRKMLEEE 71 (96)
T ss_dssp EEEEEEEEESSCCHHHHHHHHHHT
T ss_pred cEEEEEEEecCCCHHHHHHHHHHc
Confidence 345788889999999999998764
No 19
>2l1t_A Uncharacterized protein; putative C-DI-GMP binding, GSU3033, PILZ, structural genomic biology, protein structure initiative; NMR {Geobacter sulfurreducens}
Probab=38.36 E-value=38 Score=19.01 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=19.8
Q ss_pred ceEEeeEEEEeccCCceEEEEccceEEE
Q 035229 2 DVYRCKGVLSVKHSDQLHTLQAVREIYE 29 (70)
Q Consensus 2 ~vlR~KGiv~~~~~~~~~~~q~V~~~~~ 29 (70)
+.||++|+|--...++.+.+-.++....
T Consensus 75 ~~y~C~~iv~~~~~~~~l~iRLvG~v~~ 102 (109)
T 2l1t_A 75 ALCRCDGRVETLRDDRQFAIRLVGRVRE 102 (109)
T ss_dssp EEEEEEEECCSBCSSSCEEEEEEEEEEE
T ss_pred CEEEEEEEEEEecCCcEEEEEEeecccc
Confidence 3689999987665666677777776544
No 20
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.60 E-value=34 Score=17.52 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=18.4
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~ 39 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPF 39 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 4567889984 57888998888765
No 21
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.21 E-value=44 Score=17.12 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=18.7
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 39 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTF 39 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHcc
Confidence 4456788884 68899999999876
No 22
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.20 E-value=45 Score=17.26 Aligned_cols=24 Identities=8% Similarity=0.318 Sum_probs=19.0
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~ 46 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKY 46 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3456788984 68899999999876
No 23
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.01 E-value=44 Score=17.09 Aligned_cols=24 Identities=13% Similarity=0.376 Sum_probs=18.7
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 39 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQA 39 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4456788884 68899999999876
No 24
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.77 E-value=44 Score=17.05 Aligned_cols=24 Identities=4% Similarity=0.307 Sum_probs=18.8
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 39 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQI 39 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhc
Confidence 4457789984 68899999998776
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=36.66 E-value=47 Score=17.67 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=17.4
Q ss_pred ceEEEEeC---CCCHHHHHHHHhhc
Q 035229 44 NKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.+=||||. +.+.++|++.|..+
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~ 30 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKY 30 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc
Confidence 45688884 58899999999876
No 26
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=35.59 E-value=31 Score=18.22 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=17.4
Q ss_pred CccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 41 NQMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 41 ~~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+..++-||||. +.+.++|++.|..+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~ 49 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQF 49 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcc
Confidence 34456688884 68899999999876
No 27
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=35.53 E-value=43 Score=16.48 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=17.8
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.++-||||. +.+.++|++.|..+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~ 35 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKF 35 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 345688874 68889999999776
No 28
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.43 E-value=36 Score=16.99 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=17.9
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+.++-||||. +.+.++|++.|..+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~ 40 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKY 40 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 3445688873 67889999988776
No 29
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=35.40 E-value=51 Score=17.29 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=19.0
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+.++-||||. +.+.++|++.|..+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 64 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPF 64 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4457789984 68999999998876
No 30
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.28 E-value=34 Score=18.12 Aligned_cols=24 Identities=4% Similarity=0.020 Sum_probs=18.3
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+.++.+|||. +.+.++|++.|..+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~f 39 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPF 39 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4467899984 57888999888765
No 31
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=35.26 E-value=44 Score=17.73 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=16.7
Q ss_pred EEEeC---CCCHHHHHHHHhhcc
Q 035229 47 VFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 47 VfIG~---~ld~~~l~~~l~~~~ 66 (70)
||||. +.+.++|++.|..+-
T Consensus 8 lfV~nLp~~~te~~L~~~F~~~G 30 (115)
T 4f25_A 8 IFIKNLDKSIDNKALYDTFSAFG 30 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGS
T ss_pred EEECCCCCCCCHHHHHHHHhccC
Confidence 88884 689999999998763
No 32
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=35.20 E-value=51 Score=17.24 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=18.7
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+.++-||||. +++.++|++.|..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~ 49 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPF 49 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGG
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3446688884 68999999999876
No 33
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=34.67 E-value=52 Score=17.25 Aligned_cols=24 Identities=13% Similarity=0.375 Sum_probs=19.1
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+.++-||||. +.+.++|++.|..+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~ 50 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPF 50 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4456788984 68999999999876
No 34
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.60 E-value=42 Score=17.09 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=18.3
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~ 39 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKA 39 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 3457788984 67889999988765
No 35
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1
Probab=34.53 E-value=8.3 Score=20.32 Aligned_cols=12 Identities=17% Similarity=0.819 Sum_probs=9.3
Q ss_pred CccceEEEEeCC
Q 035229 41 NQMNKIVFIGHH 52 (70)
Q Consensus 41 ~~~~~lVfIG~~ 52 (70)
...+.|+|||.+
T Consensus 52 ea~~~lIfvG~D 63 (77)
T 1vcc_A 52 EALTRLIFVGSD 63 (77)
T ss_dssp HHTTSEEEEEEC
T ss_pred HhhCceEEEeec
Confidence 356789999976
No 36
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.02 E-value=45 Score=17.21 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=18.6
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +.+.++|++.|..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~ 39 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQF 39 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 3456788884 68899999999875
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.70 E-value=48 Score=16.54 Aligned_cols=22 Identities=14% Similarity=0.483 Sum_probs=16.8
Q ss_pred ceEEEEeC---CCCHHHHHHHHhhc
Q 035229 44 NKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
++-||||. +.+.++|++.|..+
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~ 29 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPF 29 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc
Confidence 45688874 57888999988766
No 38
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=33.57 E-value=48 Score=16.53 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=18.5
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +.+.++|++.|..+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~ 40 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQA 40 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 3456788873 67899999999876
No 39
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=33.41 E-value=46 Score=16.19 Aligned_cols=23 Identities=9% Similarity=0.508 Sum_probs=17.9
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.++-||||. +.+.++|++.|..+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~ 31 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPF 31 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhcc
Confidence 346688874 68889999998876
No 40
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.26 E-value=55 Score=17.11 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=18.8
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
...+-||||. +++.++|++.|..+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 41 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGF 41 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 4456788883 68999999999876
No 41
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.24 E-value=49 Score=16.45 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=18.1
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
...-||||. +.+.++|++.|..|
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~ 34 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL 34 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC
Confidence 446788884 68899999999876
No 42
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.77 E-value=58 Score=17.15 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=18.7
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
...+-||||. +.+.++|++.|..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~ 39 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI 39 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC
Confidence 3456799984 67889999999876
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.57 E-value=45 Score=16.82 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=17.1
Q ss_pred ceEEEEeC---CCCHHHHHHHHhhc
Q 035229 44 NKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
++-||||. +.+.++|++.|..+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~ 29 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKV 29 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 35588874 68899999999876
No 44
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=32.14 E-value=49 Score=16.15 Aligned_cols=24 Identities=8% Similarity=0.350 Sum_probs=18.8
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+.++-+|||. +.+.++|++.|..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~ 30 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQ 30 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 3445688884 68899999999877
No 45
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.08 E-value=51 Score=16.37 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=17.5
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.++-||||. +++.++|++.|..+
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~ 33 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERR 33 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 345688874 68889999988775
No 46
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.00 E-value=50 Score=16.32 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=16.9
Q ss_pred ceEEEEeC---CCCHHHHHHHHhhc
Q 035229 44 NKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
++=||||. +++.++|++.|..+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~ 29 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQY 29 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHc
Confidence 35588873 68889999988776
No 47
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.86 E-value=55 Score=16.66 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=18.7
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +.+.++|++.|..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~ 37 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKY 37 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3456788984 67899999999876
No 48
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.68 E-value=48 Score=17.96 Aligned_cols=24 Identities=4% Similarity=0.033 Sum_probs=18.4
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+.+.-+|||. +.+.++|++.|..+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f 40 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF 40 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3456799985 57889999988765
No 49
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=31.53 E-value=59 Score=16.92 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=17.6
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.++-||||. +++.++|++.|..+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~ 32 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKY 32 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 345788884 67889999988776
No 50
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.51 E-value=60 Score=16.96 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=19.5
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
..++-||||. +.+.++|++.|..+-
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G 54 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFG 54 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcC
Confidence 4456789984 689999999998763
No 51
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=31.44 E-value=65 Score=17.38 Aligned_cols=25 Identities=4% Similarity=0.133 Sum_probs=19.2
Q ss_pred CccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 41 NQMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 41 ~~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+..++-||||. +++.++|++.|..+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~ 66 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY 66 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 34456788984 68899999999876
No 52
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=31.39 E-value=57 Score=16.71 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=12.8
Q ss_pred cceEEEEeCCCCHHHH
Q 035229 43 MNKIVFIGHHLNQDIL 58 (70)
Q Consensus 43 ~~~lVfIG~~ld~~~l 58 (70)
..++|||..|.+++-.
T Consensus 27 kaklViiA~D~~~~~~ 42 (82)
T 3v7e_A 27 SVKEVVVAKDADPILT 42 (82)
T ss_dssp CEEEEEEETTSCHHHH
T ss_pred CeeEEEEeCCCCHHHH
Confidence 4589999999999533
No 53
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.70 E-value=51 Score=16.63 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=17.2
Q ss_pred ceEEEEeC---CCCHHHHHHHHhhc
Q 035229 44 NKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
++-||||. +++.++|++.|..+
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~ 41 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRF 41 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 45678873 68899999998876
No 54
>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence associated factor, PURA, purine ribonucleotide biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92} SCOP: c.37.1.10 PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A* 1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A* 1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A* ...
Probab=30.57 E-value=99 Score=21.34 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=29.9
Q ss_pred EEEeccC---CceEEEEccceEEEeecCCCCCccCCccceEEEEeCC--CCHHHHHHHHhhc
Q 035229 9 VLSVKHS---DQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHH--LNQDILQDSLRTC 65 (70)
Q Consensus 9 iv~~~~~---~~~~~~q~V~~~~~~~~~~~~~~~~~~~~~lVfIG~~--ld~~~l~~~l~~~ 65 (70)
++++++. .+.+++.+....++.-|+. --+.+...+||.+ +|...|-+.++.+
T Consensus 31 VvR~qGG~NAGHTVv~~g~k~~lhliPSG-----il~~~~~~vIGnGvVvdp~~l~~Ei~~L 87 (432)
T 3hid_A 31 VVRYQGGHNAGHTLVINGEKTVLHLIPSG-----ILRENVISIIGNGVVLAPDALMKEMTEL 87 (432)
T ss_dssp EEECSBCSCCCEEEEETTEEEEESSSCTT-----TTSTTCEEEECTTBCBCHHHHHHHHHHH
T ss_pred EEEcCCcCCCCCeEEECCEEEEEEecCce-----ecCCCCeEEEcCCEEEcHHHHHHHHHHH
Confidence 4555443 3445554444444444432 1234578999998 7998887776554
No 55
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.55 E-value=39 Score=16.53 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=15.5
Q ss_pred ceEEEEeC---CCCHHHHHHHHhhc
Q 035229 44 NKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
++-||||. +.+.++|++.|..+
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~ 29 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPY 29 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc
Confidence 45677773 57788888877665
No 56
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=30.27 E-value=75 Score=17.83 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=19.7
Q ss_pred CccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 41 NQMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 41 ~~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+..++-||||. +.+.++|++.|..+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~ 37 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQW 37 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 44566789984 68899999999876
No 57
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=30.18 E-value=54 Score=16.98 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=16.7
Q ss_pred EEEEeC---CCCHHHHHHHHhhc
Q 035229 46 IVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 46 lVfIG~---~ld~~~l~~~l~~~ 65 (70)
=+|||. +.+.++|++.|..|
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~~~ 43 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFSSI 43 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhc
Confidence 378884 78999999999876
No 58
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.11 E-value=35 Score=17.43 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=18.2
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~ 32 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEV 32 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTT
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhc
Confidence 3456688884 67889999998776
No 59
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=29.94 E-value=37 Score=18.80 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.0
Q ss_pred ccceEEEEeCCCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGHHLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~~ld~~~l~~~l~~~ 65 (70)
..-++++=|.|||-+++++.++..
T Consensus 49 e~lkItIEG~dIdfd~I~~~IE~~ 72 (100)
T 3bpd_A 49 ENIKITILGNNLDYEQIKGVIEDM 72 (100)
T ss_dssp EEEEEEEEEEEECHHHHHHHHHTT
T ss_pred cEEEEEEEecCCCHHHHHHHHHHc
Confidence 345788889999999999998764
No 60
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.92 E-value=63 Score=16.74 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=19.3
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
..++-||||. +++.++|++.|..+-
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G 40 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCG 40 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcC
Confidence 4456788884 688999999998763
No 61
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=29.84 E-value=57 Score=16.23 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=17.5
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+.+.-||||. +.+.++|++.|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 39 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGY 39 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3446788884 67889999988765
No 62
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.78 E-value=61 Score=16.52 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=18.5
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +.+.++|++.|..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~ 39 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDL 39 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC
Confidence 3456788884 67889999998876
No 63
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=29.73 E-value=61 Score=16.46 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=18.8
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +.+.++|++.|..+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~ 33 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY 33 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 3456788884 68999999999876
No 64
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.51 E-value=61 Score=16.41 Aligned_cols=23 Identities=9% Similarity=0.508 Sum_probs=18.0
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.++-||||. +.+.++|++.|..+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~ 36 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPF 36 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcc
Confidence 456688883 68899999999876
No 65
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=29.48 E-value=57 Score=16.11 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=17.2
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.+.-||||. +.+.++|++.|..+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~ 32 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNEC 32 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc
Confidence 345688873 67889999988875
No 66
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=29.41 E-value=59 Score=16.64 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=17.6
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.++-||||. +.+.++|++.|..+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~ 35 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQF 35 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 346688874 67889999988775
No 67
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=29.40 E-value=77 Score=17.54 Aligned_cols=24 Identities=4% Similarity=0.260 Sum_probs=19.1
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 63 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS 63 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3457789984 68899999999876
No 68
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=28.98 E-value=60 Score=18.01 Aligned_cols=24 Identities=4% Similarity=-0.025 Sum_probs=19.0
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.....||||. +.+.++|++.|..|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~ 66 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL 66 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC
Confidence 3456799985 67889999999887
No 69
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=28.85 E-value=34 Score=16.81 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=17.5
Q ss_pred ccceEEEE-eCCCCHHHHHHHHhhc
Q 035229 42 QMNKIVFI-GHHLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfI-G~~ld~~~l~~~l~~~ 65 (70)
...++-|. .++|..++|+++|..+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 34455565 5789999999998753
No 70
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} SCOP: c.80.1.2 PDB: 3ifs_A*
Probab=28.56 E-value=52 Score=22.65 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=21.0
Q ss_pred ceEEEEeCCCCHHHHHHHHhhccccc
Q 035229 44 NKIVFIGHHLNQDILQDSLRTCTLAT 69 (70)
Q Consensus 44 ~~lVfIG~~ld~~~l~~~l~~~~~~~ 69 (70)
.++.|++.|+|...+.+.|..+-..+
T Consensus 109 ~~~~fv~dnvDp~~i~~~l~~l~~~~ 134 (446)
T 3ff1_A 109 PEIVFVGNHLSSTYTKELVDYLADKD 134 (446)
T ss_dssp CEEEEESSSCCHHHHHHHHHHGGGCC
T ss_pred ceEEEEecCCCHHHHHHHHHhcCccc
Confidence 47889999999999999988775433
No 71
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=28.52 E-value=63 Score=16.24 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=16.3
Q ss_pred eEEEEeC---CCCHHHHHHHHhhc
Q 035229 45 KIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 45 ~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+-||||. +.+.++|++.|..+
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~ 26 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNV 26 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCCHHHHHHHHHhc
Confidence 4578873 67889999988876
No 72
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.44 E-value=67 Score=16.56 Aligned_cols=25 Identities=4% Similarity=-0.020 Sum_probs=18.7
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
....-||||. +...++|++.|..|-
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G 40 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLE 40 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 3456788884 678899999988763
No 73
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=28.36 E-value=58 Score=15.84 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=17.2
Q ss_pred ceEEEEeC---CCCHHHHHHHHhhc
Q 035229 44 NKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+.-||||. +.+.++|++.|..+
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~ 30 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPF 30 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGG
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhc
Confidence 45688873 68889999998876
No 74
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=28.33 E-value=67 Score=16.54 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=19.3
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +.+.++|++.|..+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 50 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDY 50 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4567899984 67889999999876
No 75
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=28.21 E-value=69 Score=16.64 Aligned_cols=25 Identities=12% Similarity=0.309 Sum_probs=19.5
Q ss_pred CccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 41 NQMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 41 ~~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
...++-||||. +++.++|++.|..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~ 39 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPF 39 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGG
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc
Confidence 34567789984 68899999999876
No 76
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.20 E-value=65 Score=16.36 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=19.0
Q ss_pred CccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 41 NQMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 41 ~~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
...++-||||. +++.++|++.|..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~ 39 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF 39 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 34456788884 68889999998876
No 77
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.14 E-value=64 Score=16.26 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.2
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
..+.-||||. +.+.++|++.|..+-
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G 44 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELG 44 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcC
Confidence 3456788884 688999999998763
No 78
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=28.03 E-value=65 Score=16.29 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=18.3
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.++-||||. +.+.++|++.|..+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~ 51 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF 51 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC
Confidence 356789984 68899999998876
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.00 E-value=71 Score=16.72 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=18.1
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
...+-||||. +.+.++|++.|..+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~ 35 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDK 35 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhc
Confidence 3345688884 68889999988776
No 80
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=27.82 E-value=74 Score=16.86 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=17.1
Q ss_pred ceEEEEeC---CCCHHHHHHHHhhc
Q 035229 44 NKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
++-||||. +.+.++|++.|..+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~ 31 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKH 31 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 35688873 68889999998876
No 81
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=27.64 E-value=70 Score=17.32 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=16.3
Q ss_pred ccceEEEEeCCCCHHHHHHHHhh
Q 035229 42 QMNKIVFIGHHLNQDILQDSLRT 64 (70)
Q Consensus 42 ~~~~lVfIG~~ld~~~l~~~l~~ 64 (70)
+.-+++++|.+-+.+.+++....
T Consensus 31 ~~~~l~i~G~g~~~~~~~~~~~~ 53 (166)
T 3qhp_A 31 QDIVLLLKGKGPDEKKIKLLAQK 53 (166)
T ss_dssp GGEEEEEECCSTTHHHHHHHHHH
T ss_pred CCeEEEEEeCCccHHHHHHHHHH
Confidence 35689999988777777665543
No 82
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_B
Probab=27.37 E-value=43 Score=20.82 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=18.9
Q ss_pred eEEEEeCC--CCHHHHHHHHhhccc
Q 035229 45 KIVFIGHH--LNQDILQDSLRTCTL 67 (70)
Q Consensus 45 ~lVfIG~~--ld~~~l~~~l~~~~~ 67 (70)
.|+||-.+ ++++.|++.|..+..
T Consensus 2 ML~fi~TDA~i~~~~Lq~~L~~av~ 26 (205)
T 3it4_B 2 MLCVLTTDAAAEPAALERALRRAAA 26 (205)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHH
T ss_pred EEEEEEecCcCCHHHHHHHHHHHHH
Confidence 58899986 899999999987654
No 83
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=27.30 E-value=67 Score=16.85 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=19.4
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
..++-+|||. +.+.++|++.|..+-
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G 56 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFG 56 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 4457789984 688999999998763
No 84
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.14 E-value=73 Score=16.95 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=19.2
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
....-||||. +...++|++.|..|-
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G 42 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCT 42 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 3456789984 678899999998763
No 85
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.05 E-value=68 Score=16.18 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=17.6
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.++-||||. +.+.++|++.|..+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~ 41 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAH 41 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 345688874 67889999999876
No 86
>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.14.1.2 PDB: 3ok7_A 3okb_A 3q1q_A 3q1r_A
Probab=26.87 E-value=77 Score=17.30 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=20.0
Q ss_pred cceEEEEeC--------CCCHHHHHHHHhhccc
Q 035229 43 MNKIVFIGH--------HLNQDILQDSLRTCTL 67 (70)
Q Consensus 43 ~~~lVfIG~--------~ld~~~l~~~l~~~~~ 67 (70)
...+|||++ +++-++|++.|..++.
T Consensus 82 g~d~Vviar~~~~~~~~~~~~~~l~~~l~~ll~ 114 (118)
T 1nz0_A 82 GFDIVVIPRKKLSEEFERVDFWTVREKLLNLLK 114 (118)
T ss_dssp SEEEEEEECHHHHHHGGGSCHHHHHHHHHHHHT
T ss_pred CcEEEEEecccccccccCCCHHHHHHHHHHHHH
Confidence 457999987 6788899998887764
No 87
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=26.82 E-value=70 Score=16.26 Aligned_cols=24 Identities=8% Similarity=0.265 Sum_probs=18.7
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~ 39 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF 39 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3456788884 68899999999876
No 88
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=26.63 E-value=39 Score=18.54 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=18.7
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~ 70 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKY 70 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3456788884 68899999999876
No 89
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=26.61 E-value=45 Score=20.88 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=18.9
Q ss_pred eEEEEeCC--CCHHHHHHHHhhccc
Q 035229 45 KIVFIGHH--LNQDILQDSLRTCTL 67 (70)
Q Consensus 45 ~lVfIG~~--ld~~~l~~~l~~~~~ 67 (70)
.|+||-.+ ++++.|++.|..+..
T Consensus 2 ML~fi~TDA~i~~~~Lq~~L~~av~ 26 (215)
T 1vra_B 2 MLSFVTTDANIDHGHLQGALSAITN 26 (215)
T ss_dssp CEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred eEEEEeeCCcCCHHHHHHHHHHHHH
Confidence 58899986 899999999887654
No 90
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.37 E-value=64 Score=16.71 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=17.7
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.++-||||. +++.++|++.|..+
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~ 39 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMA 39 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 345688873 67889999999876
No 91
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.28 E-value=70 Score=16.06 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=18.3
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 32 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAY 32 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3456788873 68889999999876
No 92
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A {Plasmodium falciparum} SCOP: c.37.1.10
Probab=26.19 E-value=1.2e+02 Score=21.09 Aligned_cols=52 Identities=10% Similarity=0.184 Sum_probs=29.6
Q ss_pred EEEeccC---CceEEEEccceEEEeecCCCCCccCCccceEEEEeCC--CCHHHHHHHHhhc
Q 035229 9 VLSVKHS---DQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHH--LNQDILQDSLRTC 65 (70)
Q Consensus 9 iv~~~~~---~~~~~~q~V~~~~~~~~~~~~~~~~~~~~~lVfIG~~--ld~~~l~~~l~~~ 65 (70)
++++++. ++.+++.+....++.-|+. --..+...+||.+ +|+..|-+.++.+
T Consensus 43 VvR~qGG~NAGHTVv~~g~k~~lhliPSG-----il~~~~~~vIGnGvVvdp~~L~~Ei~~L 99 (442)
T 1p9b_A 43 TCRFNGGANAGHTISVNDKKYALHLLPCG-----VLYDNNISVLGNGMVIHVKSLMEEIESV 99 (442)
T ss_dssp EEECSCCTTCCEEEEETTEEEEESSSCTT-----TTSTTCEEEECTTCEECHHHHHHHHHHH
T ss_pred EEEcCccCCCCcEEEECCEEEEEEecCcc-----ccCCCceEEECCcEEEcHHHHHHHHHHH
Confidence 4555543 3345554333333333432 1234578999998 7998887776654
No 93
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.11 E-value=71 Score=16.04 Aligned_cols=24 Identities=13% Similarity=0.419 Sum_probs=18.3
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
.++-||||. +.+.++|++.|..+-
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G 34 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMG 34 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 345688884 688999999988763
No 94
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=25.77 E-value=62 Score=15.30 Aligned_cols=19 Identities=11% Similarity=0.335 Sum_probs=14.3
Q ss_pred EEEe---CCCCHHHHHHHHhhc
Q 035229 47 VFIG---HHLNQDILQDSLRTC 65 (70)
Q Consensus 47 VfIG---~~ld~~~l~~~l~~~ 65 (70)
|||| .+.+.++|++.|..+
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~ 23 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQF 23 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTT
T ss_pred EEEecCCCCCCHHHHHHHHHhc
Confidence 4565 357889999988876
No 95
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.66 E-value=50 Score=17.23 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=19.2
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +.+.++|++.|..|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 49 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAV 49 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 4456789984 68899999999876
No 96
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.64 E-value=73 Score=16.07 Aligned_cols=24 Identities=8% Similarity=0.373 Sum_probs=18.0
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+.++-||||. +++.++|++.|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 39 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKY 39 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhc
Confidence 3445688874 68889999988776
No 97
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.50 E-value=78 Score=16.36 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=18.6
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
.+.-||||. +.+.++|++.|..|-
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G 40 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAG 40 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 345688884 689999999998763
No 98
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=25.32 E-value=93 Score=17.14 Aligned_cols=41 Identities=5% Similarity=0.195 Sum_probs=25.1
Q ss_pred ceEEEeecCCCCCccCCccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 25 REIYEIVPARKWRTEENQMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
+..+.+....+........+.-+||+. +.+.++|++.|..+
T Consensus 80 g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~ 123 (175)
T 1fje_B 80 GNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA 123 (175)
T ss_dssp TEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTC
T ss_pred CeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 344455444322222334567788884 68889999998775
No 99
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=25.27 E-value=75 Score=16.05 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=18.7
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
.+.-||||. +.+.++|++.|..+-
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G 42 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELF 42 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 456789984 688999999988763
No 100
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.27 E-value=71 Score=15.79 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=17.6
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.++=||||. +.+.++|++.|..+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~ 32 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQY 32 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhC
Confidence 446688874 67889999988776
No 101
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=25.25 E-value=80 Score=17.71 Aligned_cols=21 Identities=19% Similarity=0.138 Sum_probs=16.9
Q ss_pred EEeCCCCHHHHHHHHhhcccc
Q 035229 48 FIGHHLNQDILQDSLRTCTLA 68 (70)
Q Consensus 48 fIG~~ld~~~l~~~l~~~~~~ 68 (70)
+.|.+.+.+++.+.|.+...+
T Consensus 143 ~~g~~~~~~~i~~~l~~~~~~ 163 (170)
T 3me7_A 143 IYGVNYNYLEFVNALRLARGE 163 (170)
T ss_dssp EESSSCCHHHHHHHHHHHTTC
T ss_pred EeCCCCCHHHHHHHHHHhhcc
Confidence 577788999999999887643
No 102
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=25.11 E-value=84 Score=16.58 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=19.1
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..+.-||||. +.+.++|++.|..+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 46 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEY 46 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4467899984 67899999999876
No 103
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.97 E-value=73 Score=16.48 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=17.8
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.+.-||||. +.+.++|++.|..+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~ 49 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARF 49 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh
Confidence 456788984 67889999988765
No 104
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=24.53 E-value=79 Score=16.10 Aligned_cols=24 Identities=4% Similarity=0.162 Sum_probs=18.8
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..+.-||||. +++.++|++.|..+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 53 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEF 53 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4457789984 67889999998876
No 105
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.23 E-value=76 Score=15.75 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=17.2
Q ss_pred ceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 44 NKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
++=||||. +.+.++|++.|..+-
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G 33 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRK 33 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 34578874 688899999988764
No 106
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.21 E-value=83 Score=16.20 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=17.8
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.++-||||. +++.++|++.|..+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~ 49 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPF 49 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc
Confidence 345688884 68899999998775
No 107
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2yep_B* 2vzk_B* 2w4n_B* 2yep_F*
Probab=24.05 E-value=54 Score=20.51 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=18.9
Q ss_pred eEEEEeCC--CCHHHHHHHHhhccc
Q 035229 45 KIVFIGHH--LNQDILQDSLRTCTL 67 (70)
Q Consensus 45 ~lVfIG~~--ld~~~l~~~l~~~~~ 67 (70)
.|+||-.+ ++++.|++.|..+..
T Consensus 2 ML~fi~TDA~i~~~~Lq~~L~~av~ 26 (213)
T 2v4i_B 2 LLTFFATDARLDPAEQDRLFRRVMD 26 (213)
T ss_dssp CEEEEEECCBCCHHHHHHHHHHHHH
T ss_pred eEEEEecCCcCCHHHHHHHHHHHHH
Confidence 48899986 899999999987654
No 108
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=23.96 E-value=68 Score=15.11 Aligned_cols=19 Identities=11% Similarity=0.412 Sum_probs=14.1
Q ss_pred EEEe---CCCCHHHHHHHHhhc
Q 035229 47 VFIG---HHLNQDILQDSLRTC 65 (70)
Q Consensus 47 VfIG---~~ld~~~l~~~l~~~ 65 (70)
|||| .+.+.++|++.|..+
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhc
Confidence 4565 357888999888776
No 109
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.93 E-value=77 Score=15.74 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=16.9
Q ss_pred ceEEEEeC---CCCHHHHHHHHhhc
Q 035229 44 NKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
++-||||. +.+.++|++.|..+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~ 29 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAF 29 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 45688873 67889999998876
No 110
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.92 E-value=88 Score=16.40 Aligned_cols=25 Identities=4% Similarity=0.142 Sum_probs=19.0
Q ss_pred CccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 41 NQMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 41 ~~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.+.+.-+|||. +...++|++.|..+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~ 34 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRF 34 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 34567888884 57888999998775
No 111
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.85 E-value=79 Score=16.02 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=16.5
Q ss_pred ceEEEEeC---CCCHHHHHHHHhh
Q 035229 44 NKIVFIGH---HLNQDILQDSLRT 64 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~ 64 (70)
+.-||||. +++.++|++.|..
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~ 32 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVK 32 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHH
Confidence 34578874 6889999999987
No 112
>3r7t_A Adenylosuccinate synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol; HET: CIT PGE; 2.30A {Campylobacter jejuni} SCOP: c.37.1.0
Probab=23.79 E-value=1.1e+02 Score=21.09 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=30.0
Q ss_pred EEEeccC---CceEEEEccceEEEeecCCCCCccCCccceEEEEeCC--CCHHHHHHHHhhc
Q 035229 9 VLSVKHS---DQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHH--LNQDILQDSLRTC 65 (70)
Q Consensus 9 iv~~~~~---~~~~~~q~V~~~~~~~~~~~~~~~~~~~~~lVfIG~~--ld~~~l~~~l~~~ 65 (70)
++++++. .+.+++.+....++.-|+. --......+||.+ +|...|-+.++.+
T Consensus 34 VvR~qGG~NAGHTVv~~g~k~~lhliPSG-----il~~~~~~vIGnGvVvdp~~l~~Ei~~L 90 (419)
T 3r7t_A 34 VCRSAGGHNAGHTIWVNGVRYALHLMPSG-----VLHPRCINIIGNGVVVSPEVLIAEMAQF 90 (419)
T ss_dssp EEECSBCTTSSEEEEETTEEEEESSSCGG-----GGSTTCEEEECTTBEECHHHHHHHHTTS
T ss_pred EEEcCCcCCCCcEEEECCEEEEEEecCce-----EcCCCCeEEECCCEEEcHHHHHHHHHHH
Confidence 4455443 2344444433334444432 1233578999998 7999888887664
No 113
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.68 E-value=81 Score=15.90 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=18.3
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +++.++|++.|..+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~ 36 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKY 36 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 3456788884 68889999998876
No 114
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=23.68 E-value=73 Score=17.47 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=18.9
Q ss_pred CccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 41 NQMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 41 ~~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
...++-||||. +.+.++|++.|..+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~ 71 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKY 71 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 34556788984 67889999998876
No 115
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=23.49 E-value=71 Score=16.55 Aligned_cols=25 Identities=4% Similarity=0.020 Sum_probs=18.7
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
....-||||. +.+.++|++.|..|-
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g 36 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCR 36 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 3456788884 578889999988763
No 116
>3gf6_A Uncharacterized bacterial lipoprotein; all-beta fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.69A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.28 E-value=92 Score=18.94 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=15.5
Q ss_pred EEeeEEEEeccCCceEEEEccceE
Q 035229 4 YRCKGVLSVKHSDQLHTLQAVREI 27 (70)
Q Consensus 4 lR~KGiv~~~~~~~~~~~q~V~~~ 27 (70)
||+||-+.+.+++.. +.+|.-.
T Consensus 116 lrlkgel~l~gdewm--idyiyaq 137 (224)
T 3gf6_A 116 LRLKGELLVSGDEWM--IDYVYAQ 137 (224)
T ss_dssp EEEEEEEECCSSSEE--EEEEEEE
T ss_pred eEecceEEecCchHh--HHHHHHH
Confidence 899999999987543 4555433
No 117
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.83 E-value=65 Score=15.22 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=14.2
Q ss_pred EEEe---CCCCHHHHHHHHhhc
Q 035229 47 VFIG---HHLNQDILQDSLRTC 65 (70)
Q Consensus 47 VfIG---~~ld~~~l~~~l~~~ 65 (70)
|||| .+.+.++|++.|..+
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~~ 24 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQF 24 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhc
Confidence 5666 357888899888776
No 118
>2ljp_A Ribonuclease P protein component; rnasep, ribozyme, hydrolase; NMR {Escherichia coli}
Probab=22.75 E-value=55 Score=17.95 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=18.7
Q ss_pred cceEEEEeC----CCCHHHHHHHHhhcc
Q 035229 43 MNKIVFIGH----HLNQDILQDSLRTCT 66 (70)
Q Consensus 43 ~~~lVfIG~----~ld~~~l~~~l~~~~ 66 (70)
..-+|||++ +++-++|++.|..++
T Consensus 82 ~~d~Vviar~~~~~~~~~~l~~~l~~ll 109 (119)
T 2ljp_A 82 AMDFVVVAKKGVADLDNRALSEALEKLW 109 (119)
T ss_dssp SSEECEEECTTGGGSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCcccCCHHHHHHHHHHHH
Confidence 357999997 478888888887665
No 119
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=22.71 E-value=1e+02 Score=17.12 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=19.6
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
....-||||. +.+.++|++.|..|-
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G 69 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCT 69 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 3456799985 678899999998874
No 120
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=22.68 E-value=1.3e+02 Score=17.98 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=18.9
Q ss_pred eEEeeEEEEeccCCceEEEEccceEEEeecC
Q 035229 3 VYRCKGVLSVKHSDQLHTLQAVREIYEIVPA 33 (70)
Q Consensus 3 vlR~KGiv~~~~~~~~~~~q~V~~~~~~~~~ 33 (70)
=|+++|++.-. .....+++.=+..|.+..+
T Consensus 94 ~L~mvG~l~~~-~~~~alv~~dg~v~~V~~G 123 (181)
T 4av2_M 94 NMRYVGILKSG-QKVSGFIEAEGYVYTVGVG 123 (181)
T ss_dssp TEEEEEEECSS-SCCEEEEEETTEEEEECSS
T ss_pred heEEEEEEEeC-CEEEEEEecCCCEEEEccC
Confidence 37999999643 3444566765555655554
No 121
>2apj_A Putative esterase; AT4G34215, CAR esterase family 6, structural genomics, protein structure initiative, CESG; HET: SEB; 1.60A {Arabidopsis thaliana} SCOP: c.23.10.7
Probab=22.29 E-value=35 Score=21.49 Aligned_cols=14 Identities=21% Similarity=0.090 Sum_probs=11.7
Q ss_pred EEeeEEEEeccCCc
Q 035229 4 YRCKGVLSVKHSDQ 17 (70)
Q Consensus 4 lR~KGiv~~~~~~~ 17 (70)
+.+||++|.+|+..
T Consensus 150 ~~ikGvlWyQGEsn 163 (260)
T 2apj_A 150 GEIKAVLWYQGESD 163 (260)
T ss_dssp CEEEEEEEECCGGG
T ss_pred CceEEEEEecCCCC
Confidence 68999999998754
No 122
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=22.22 E-value=1e+02 Score=16.54 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=19.2
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
..++=+|||. +.+.++|++.|..+-
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G 48 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYA 48 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 3456689985 578899999998773
No 123
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.01 E-value=68 Score=16.36 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=18.3
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
...+-||||. +.+.++|++.|..+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 40 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQY 40 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3446688873 68899999999876
No 124
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.94 E-value=90 Score=15.78 Aligned_cols=23 Identities=4% Similarity=0.225 Sum_probs=17.2
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.++-||||. +++.++|++.|..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~ 39 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPF 39 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 445688873 68888999888765
No 125
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.86 E-value=93 Score=17.05 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=17.1
Q ss_pred ceEEEE--e---CCCCHHHHHHHHhhcc
Q 035229 44 NKIVFI--G---HHLNQDILQDSLRTCT 66 (70)
Q Consensus 44 ~~lVfI--G---~~ld~~~l~~~l~~~~ 66 (70)
++-+|| | .+.+.++|++.|..+-
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG 52 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCG 52 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcC
Confidence 456888 4 3578999999997653
No 126
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=21.79 E-value=92 Score=15.81 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=18.9
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..++-||||. +.+.++|++.|..+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~ 47 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEY 47 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc
Confidence 3457799984 67889999999876
No 127
>2kl5_A Uncharacterized protein YUTD; structural genomics, protein northeast structural genom consortium (NESG), target SR232, PSI-2; NMR {Bacillus subtilis}
Probab=21.70 E-value=22 Score=20.09 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=7.3
Q ss_pred eEEeeEEEE
Q 035229 3 VYRCKGVLS 11 (70)
Q Consensus 3 vlR~KGiv~ 11 (70)
=||+||+..
T Consensus 57 QLRLKGFy~ 65 (110)
T 2kl5_A 57 QLRLKGFFD 65 (110)
T ss_dssp SCEEEECCC
T ss_pred eeeeccccc
Confidence 379999985
No 128
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=21.66 E-value=73 Score=15.83 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=15.1
Q ss_pred EEEeC---CCCHHHHHHHHhhcc
Q 035229 47 VFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 47 VfIG~---~ld~~~l~~~l~~~~ 66 (70)
+|||. +.+.++|++.|..+-
T Consensus 4 l~V~nL~~~~t~~~l~~~F~~~G 26 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVHSLG 26 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHHTTT
T ss_pred EEEeCCCCCCCHHHHHHHHHHhC
Confidence 56763 578899999988764
No 129
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.63 E-value=68 Score=16.66 Aligned_cols=24 Identities=4% Similarity=0.052 Sum_probs=17.9
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
....-||||. +.+.++|++.|..|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~ 39 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPL 39 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc
Confidence 3456789984 57888999888765
No 130
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.46 E-value=90 Score=15.58 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=18.4
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..+.-||||. +.+.++|++.|..+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~ 39 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGY 39 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc
Confidence 3456788884 67889999998776
No 131
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=21.40 E-value=95 Score=16.31 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=18.6
Q ss_pred cceEEEEe---CCCCHHHHHHHHhhc
Q 035229 43 MNKIVFIG---HHLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG---~~ld~~~l~~~l~~~ 65 (70)
.++-|||| .+.+.++|++.|..+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~ 60 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSC 60 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 35678888 478999999999876
No 132
>2d7u_A Adenylosuccinate synthetase; structural genomics, conserved hypothetical protein, NPPSFA; 2.50A {Pyrococcus horikoshii}
Probab=21.29 E-value=1.5e+02 Score=19.76 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=18.2
Q ss_pred cceEEEEeCC--CCHHHHHHHHhhc
Q 035229 43 MNKIVFIGHH--LNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~~--ld~~~l~~~l~~~ 65 (70)
.+...+||.+ +|...|.+.++.+
T Consensus 64 ~~~~~vIGnGvVvdp~~l~~Ei~~L 88 (339)
T 2d7u_A 64 TKARLLIGAGVLVDPEVFFHELEQL 88 (339)
T ss_dssp SSSBEEECTTSCBCHHHHHHHHHHT
T ss_pred CCceEEECCcEEEcHHHHHHHHHHH
Confidence 3568999987 7999888877665
No 133
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=21.27 E-value=45 Score=17.20 Aligned_cols=22 Identities=5% Similarity=0.184 Sum_probs=13.2
Q ss_pred ceEEEEeC---------CCCHHHHHHHHhhc
Q 035229 44 NKIVFIGH---------HLNQDILQDSLRTC 65 (70)
Q Consensus 44 ~~lVfIG~---------~ld~~~l~~~l~~~ 65 (70)
++.||||. +...++|++.|..+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~ 36 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKA 36 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhc
Confidence 46788874 22335666666654
No 134
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.21 E-value=93 Score=16.17 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=18.6
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
...+-||||. +.+.++|++.|..+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~ 51 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQW 51 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3456788883 68899999999876
No 135
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.95 E-value=96 Score=15.74 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=18.1
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.+.-||||. +.+.++|++.|..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~ 39 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGL 39 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTS
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHC
Confidence 446788884 68899999998876
No 136
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.85 E-value=89 Score=16.58 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=18.5
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
...-||||. +.+.++|++.|..|-
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G 50 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLD 50 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 346789984 688899999988763
No 137
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=20.78 E-value=88 Score=15.21 Aligned_cols=22 Identities=14% Similarity=0.540 Sum_probs=17.3
Q ss_pred ceEEEEeC---CCCHHHHHHHHhhc
Q 035229 44 NKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
++-||||. +.+.++|++.|..+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~ 30 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC 30 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 45688874 57889999999876
No 138
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=20.68 E-value=99 Score=16.77 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=17.1
Q ss_pred ceEEEEeC---CCCHHHHHHHHhhc
Q 035229 44 NKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
++-||||. +.+.++|++.|..+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~ 27 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKY 27 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhC
Confidence 35588874 67889999999876
No 139
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.62 E-value=97 Score=15.65 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=17.7
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.++-||||. +++.++|++.|..+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~ 39 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTF 39 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGG
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhc
Confidence 345578873 68899999999876
No 140
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=20.59 E-value=96 Score=15.56 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=17.9
Q ss_pred ceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 44 NKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 44 ~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
..-+|||. +.+.++|++.|..+-
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G 36 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYG 36 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccC
Confidence 35688884 689999999998763
No 141
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=20.46 E-value=1.1e+02 Score=16.14 Aligned_cols=24 Identities=4% Similarity=0.171 Sum_probs=19.0
Q ss_pred ccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 42 QMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 42 ~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
..+.-||||. +.+.++|++.|..+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 59 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEF 59 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4457788884 68899999999876
No 142
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=20.45 E-value=88 Score=15.11 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=16.3
Q ss_pred eEEEEeC---CCCHHHHHHHHhhc
Q 035229 45 KIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 45 ~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
.-||||. +.+.++|++.|..+
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~ 28 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTY 28 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhC
Confidence 3477874 68899999998876
No 143
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=20.36 E-value=1.1e+02 Score=16.33 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=18.5
Q ss_pred cceEEEEeC---CCCHHHHHHHHhhcc
Q 035229 43 MNKIVFIGH---HLNQDILQDSLRTCT 66 (70)
Q Consensus 43 ~~~lVfIG~---~ld~~~l~~~l~~~~ 66 (70)
...-||||. +.+.++|++.|..|-
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G 53 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENS 53 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhC
Confidence 345688884 688999999998764
No 144
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=20.35 E-value=31 Score=17.75 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=16.4
Q ss_pred CccceEEEEeC---CCCHHHHHHHHhhc
Q 035229 41 NQMNKIVFIGH---HLNQDILQDSLRTC 65 (70)
Q Consensus 41 ~~~~~lVfIG~---~ld~~~l~~~l~~~ 65 (70)
....+-||||. +.+.++|++.|..+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~ 43 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGL 43 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc
Confidence 34557788984 57888898888765
No 145
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=20.27 E-value=98 Score=15.57 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=14.4
Q ss_pred EEEe---CCCCHHHHHHHHhhc
Q 035229 47 VFIG---HHLNQDILQDSLRTC 65 (70)
Q Consensus 47 VfIG---~~ld~~~l~~~l~~~ 65 (70)
|||| .+.+.++|++.|..+
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~~ 24 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSYY 24 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhc
Confidence 5666 367889999988776
Done!