BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035231
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q20591|VA0E_CAEEL V-type proton ATPase subunit e OS=Caenorhabditis elegans
GN=vha-17 PE=3 SV=2
Length = 86
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 27 RGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLIVP 64
+GP+ ++ L +++TA V CWM W +V+L Q+ PLI P
Sbjct: 27 KGPNRGIIQLMIIMTA-VCCWMFWIMVFLHQLNPLIGP 63
>sp|Q9BDP4|VA0E1_CANFA V-type proton ATPase subunit e 1 OS=Canis familiaris GN=ATP6V0E1
PE=3 SV=3
Length = 81
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 2 GFLVTTLVFLVIGIIASLCTRICCNRGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPL 61
G V +V V C +GP+ ++ +T+++T +V C++ W I LAQ+ PL
Sbjct: 5 GLTVPLIVMSVFWGFVGFCVPWFIPKGPNRGVI-ITMLVTCSVCCYLFWLIAILAQLNPL 63
Query: 62 IVPILSEE 69
P L E
Sbjct: 64 FGPQLKNE 71
>sp|Q5RAV0|VA0E1_PONAB V-type proton ATPase subunit e 1 OS=Pongo abelii GN=ATP6V0E1 PE=3
SV=3
Length = 81
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 27 RGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLIVPILSEE 69
+GP+ ++ +T+++T +V C++ W I LAQ+ PL P L E
Sbjct: 30 KGPNRGVI-ITMLVTCSVCCYLFWLIAILAQLNPLFGPQLKNE 71
>sp|O15342|VA0E1_HUMAN V-type proton ATPase subunit e 1 OS=Homo sapiens GN=ATP6V0E1 PE=2
SV=2
Length = 81
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 27 RGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLIVPILSEE 69
+GP+ ++ +T+++T +V C++ W I LAQ+ PL P L E
Sbjct: 30 KGPNRGVI-ITMLVTCSVCCYLFWLIAILAQLNPLFGPQLKNE 71
>sp|Q794C0|VA0E1_RAT V-type proton ATPase subunit e 1 OS=Rattus norvegicus GN=Atp6v0e1
PE=3 SV=3
Length = 81
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 27 RGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLIVPILSEE 69
+GP+ ++ +T+++T +V C++ W I LAQ+ PL P L E
Sbjct: 30 KGPNRGVI-ITMLVTCSVCCYLFWLIAILAQLNPLFGPQLKNE 71
>sp|Q9CQD8|VA0E1_MOUSE V-type proton ATPase subunit e 1 OS=Mus musculus GN=Atp6v0e1 PE=2
SV=3
Length = 81
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 27 RGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLIVPILSEE 69
+GP+ ++ +T+++T +V C++ W I LAQ+ PL P L E
Sbjct: 30 KGPNRGVI-ITMLVTCSVCCYLFWLIAILAQLNPLFGPQLKNE 71
>sp|P81103|VA0E1_BOVIN V-type proton ATPase subunit e 1 OS=Bos taurus GN=ATP6V0E1 PE=1
SV=3
Length = 81
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 27 RGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLIVPILSEE 69
+GP+ ++ +T+++T +V C++ W I LAQ+ PL P L E
Sbjct: 30 KGPNRGVI-ITMLVTCSVCCYLFWLIAILAQLNPLFGPQLKNE 71
>sp|Q69Z14|VA0E_SCHPO V-type proton ATPase subunit e OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=vma9 PE=3 SV=2
Length = 67
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 27 RGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLIVP 64
+G +T+ ++L++T + C+++WAI YLAQ+ PL P
Sbjct: 26 KGNNTSTWQMSLILTFSC-CYLLWAITYLAQLHPLEAP 62
>sp|Q5EB76|VA0E2_RAT V-type proton ATPase subunit e 2 OS=Rattus norvegicus GN=Atp6v0e2
PE=3 SV=1
Length = 81
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 27 RGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLIVPILSEE 69
+GP+ ++ +T+++ V C++ W I LAQ+ PL P L E
Sbjct: 30 KGPNRGVI-ITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNE 71
>sp|Q91XE7|VA0E2_MOUSE V-type proton ATPase subunit e 2 OS=Mus musculus GN=Atp6v0e2 PE=2
SV=1
Length = 81
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 27 RGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLIVPILSEE 69
+GP+ ++ +T+++ V C++ W I LAQ+ PL P L E
Sbjct: 30 KGPNRGVI-ITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNE 71
>sp|Q8NHE4|VA0E2_HUMAN V-type proton ATPase subunit e 2 OS=Homo sapiens GN=ATP6V0E2 PE=2
SV=1
Length = 81
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 27 RGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLIVPILSEE 69
+GP+ ++ +T+++ V C++ W I LAQ+ PL P L E
Sbjct: 30 KGPNRGVI-ITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNE 71
>sp|Q2KIB5|VA0E2_BOVIN V-type proton ATPase subunit e 2 OS=Bos taurus GN=ATP6V0E2 PE=3
SV=1
Length = 81
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 27 RGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLIVPILSEE 69
+GP+ ++ +T+++ V C++ W I LAQ+ PL P L E
Sbjct: 30 KGPNRGVI-ITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNE 71
>sp|P08005|OPPB_SALTY Oligopeptide transport system permease protein OppB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=oppB PE=1 SV=1
Length = 306
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 3 FLVTTLVFLVIGIIASLCTRICCNRGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLI 62
F++ +V L + IAS+ RI RG +LH + TA M I++ +KP +
Sbjct: 173 FMILPMVALSLAYIASIA-RIT--RGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPAL 229
Query: 63 VPILS 67
+P+LS
Sbjct: 230 LPVLS 234
>sp|Q75EU0|VA0E_ASHGO V-type proton ATPase subunit e OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=VMA9
PE=3 SV=1
Length = 72
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 48 MMWAIVYLAQMKPLIVPILSE 68
+MWA+ YL+Q+ PL+VP S+
Sbjct: 45 LMWAVTYLSQLHPLVVPRRSD 65
>sp|P0AFH5|OPPB_SHIFL Oligopeptide transport system permease protein OppB OS=Shigella
flexneri GN=oppB PE=3 SV=1
Length = 306
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 3 FLVTTLVFLVIGIIASLCTRICCNRGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLI 62
F++ +V L + IAS+ RI RG +LH + TA M I+ +KP +
Sbjct: 173 FMILPMVALSLAYIASIA-RIT--RGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPAL 229
Query: 63 VPILS 67
+P+LS
Sbjct: 230 LPVLS 234
>sp|P0AFH2|OPPB_ECOLI Oligopeptide transport system permease protein OppB OS=Escherichia
coli (strain K12) GN=oppB PE=1 SV=1
Length = 306
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 3 FLVTTLVFLVIGIIASLCTRICCNRGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLI 62
F++ +V L + IAS+ RI RG +LH + TA M I+ +KP +
Sbjct: 173 FMILPMVALSLAYIASIA-RIT--RGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPAL 229
Query: 63 VPILS 67
+P+LS
Sbjct: 230 LPVLS 234
>sp|P0AFH3|OPPB_ECOL6 Oligopeptide transport system permease protein OppB OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=oppB
PE=3 SV=1
Length = 306
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 3 FLVTTLVFLVIGIIASLCTRICCNRGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLI 62
F++ +V L + IAS+ RI RG +LH + TA M I+ +KP +
Sbjct: 173 FMILPMVALSLAYIASIA-RIT--RGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPAL 229
Query: 63 VPILS 67
+P+LS
Sbjct: 230 LPVLS 234
>sp|P0AFH4|OPPB_ECO57 Oligopeptide transport system permease protein OppB OS=Escherichia
coli O157:H7 GN=oppB PE=3 SV=1
Length = 306
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 3 FLVTTLVFLVIGIIASLCTRICCNRGPSTNLLHLTLVITATVSCWMMWAIVYLAQMKPLI 62
F++ +V L + IAS+ RI RG +LH + TA M I+ +KP +
Sbjct: 173 FMILPMVALSLAYIASIA-RIT--RGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPAL 229
Query: 63 VPILS 67
+P+LS
Sbjct: 230 LPVLS 234
>sp|Q5K8S8|VA0E_CRYNJ V-type proton ATPase subunit e OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=VMA9 PE=3 SV=2
Length = 71
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 49 MWAIVYLAQMKPLIVPILSE 68
MWAI YL Q+ PLI P S+
Sbjct: 47 MWAITYLCQLHPLITPRRSD 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.141 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,827,439
Number of Sequences: 539616
Number of extensions: 687022
Number of successful extensions: 1955
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1939
Number of HSP's gapped (non-prelim): 21
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)