Query 035231
Match_columns 70
No_of_seqs 100 out of 203
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:53:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u7d_B Protein HEG homolog 1; 38.4 4.5 0.00015 19.2 -0.6 12 52-63 5-16 (26)
2 3f1i_S STAM-1, signal transduc 24.7 8.5 0.00029 22.7 -1.2 12 56-67 37-48 (77)
3 2lly_A Neuronal acetylcholine 19.8 1.7E+02 0.0057 18.0 5.8 58 5-69 75-137 (137)
4 3cn5_A Aquaporin; membrane pro 19.6 1.5E+02 0.0053 20.8 4.3 17 4-20 68-84 (304)
5 1nkz_B Light-harvesting protei 14.8 1.5E+02 0.0051 15.2 2.6 21 4-24 16-36 (41)
6 1vla_A Hydroperoxide resistanc 13.9 2.4E+02 0.0082 17.2 3.8 27 38-64 53-79 (150)
7 3iyz_A Aquaporin-4; water tran 13.5 2.8E+02 0.0096 20.0 4.5 16 4-19 59-74 (340)
8 1lgh_B LH II, B800/850, light 13.2 1.8E+02 0.006 15.3 2.6 21 4-24 21-41 (45)
9 1wrg_A LH-1, light-harvesting 12.0 1.8E+02 0.0061 15.8 2.4 23 4-26 24-46 (55)
10 3llq_A Aquaporin Z 2; aquapori 11.0 4E+02 0.014 18.1 6.1 16 4-19 37-52 (256)
No 1
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=38.45 E-value=4.5 Score=19.23 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=9.8
Q ss_pred HHHHHhhccccc
Q 035231 52 IVYLAQMKPLIV 63 (70)
Q Consensus 52 ~~YmaQm~PLi~ 63 (70)
|.|=+|.||=.-
T Consensus 5 ciypgqynpsfi 16 (26)
T 3u7d_B 5 CIFPGQYNPSFI 16 (26)
T ss_pred ccccCccCcccc
Confidence 789999999653
No 2
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=24.75 E-value=8.5 Score=22.72 Aligned_cols=12 Identities=50% Similarity=0.540 Sum_probs=9.6
Q ss_pred HhhccccccccC
Q 035231 56 AQMKPLIVPILS 67 (70)
Q Consensus 56 aQm~PLi~P~~~ 67 (70)
+||+|||.+++.
T Consensus 37 ~~MgplId~kLE 48 (77)
T 3f1i_S 37 HQMGPLIDEKLE 48 (77)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 699999987653
No 3
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=19.80 E-value=1.7e+02 Score=18.03 Aligned_cols=58 Identities=21% Similarity=0.431 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccCCCc-----eehhhHHHHHHHHHHHHHHHHHHHHhhccccccccCCC
Q 035231 5 VTTLVFLVIGIIASLCTRICCNRGPST-----NLLHLTLVITATVSCWMMWAIVYLAQMKPLIVPILSEE 69 (70)
Q Consensus 5 ~~T~~~~~v~~~~~~~~~~~~~kg~~~-----~l~~~~lv~~a~~ccwL~W~~~YmaQm~PLi~P~~~~~ 69 (70)
..+.++...+.+...++..+..|++++ ..+.. +|.|++-+.+-+...-=+..|-..||
T Consensus 75 ~~~~~~v~~sl~~tv~V~~~~~r~~~~~~mp~~~~dr-------~~lwif~~~~~~gt~~i~~~p~~~~~ 137 (137)
T 2lly_A 75 LFTMIFVTLSIVITVFVLNVHHRSPETHTGGGGGIDR-------IFLWMFIIVCLLGTVGLFLPPWLAGE 137 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSCSSCCSSCSSSHHH-------HHHHHHHHHHHHHHHHHHCCSTTTCC
T ss_pred HHHHHHHHHHhhhhhhhhhHHhcCCccCccchHHHHH-------HHHHHHHHHHHHhhhhheecccccCC
Confidence 344555555555555554333344432 23333 46777777666665544444544443
No 4
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=19.57 E-value=1.5e+02 Score=20.79 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHhhhh
Q 035231 4 LVTTLVFLVIGIIASLC 20 (70)
Q Consensus 4 ~~~T~~~~~v~~~~~~~ 20 (70)
+++|.+++.+|......
T Consensus 68 fiGT~lLv~~g~gsv~~ 84 (304)
T 3cn5_A 68 FIATLLFLYITVATVIG 84 (304)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHeE
Confidence 46888888887765544
No 5
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=14.76 E-value=1.5e+02 Score=15.23 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHhhhhhhhh
Q 035231 4 LVTTLVFLVIGIIASLCTRIC 24 (70)
Q Consensus 4 ~~~T~~~~~v~~~~~~~~~~~ 24 (70)
..++..|.++++++=+.++..
T Consensus 16 ~~~~~~F~~iA~vAH~l~w~w 36 (41)
T 1nkz_B 16 IDGTRVFLGLALVAHFLAFSA 36 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 346677888888887777744
No 6
>1vla_A Hydroperoxide resistance protein OSMC; TM0919, structural GE JCSG, protein structure initiative, PSI, joint center for S genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: d.227.1.2
Probab=13.86 E-value=2.4e+02 Score=17.16 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Q 035231 38 LVITATVSCWMMWAIVYLAQMKPLIVP 64 (70)
Q Consensus 38 lv~~a~~ccwL~W~~~YmaQm~PLi~P 64 (70)
++..|...|..+++-.|+.|.++++.+
T Consensus 53 LllaAlaaC~~~~~~~~a~~~g~~~~~ 79 (150)
T 1vla_A 53 LVLTGLMGCTGMDVVSILRKMKVIDQM 79 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCcce
Confidence 566777899999999999999855443
No 7
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=13.52 E-value=2.8e+02 Score=19.98 Aligned_cols=16 Identities=13% Similarity=0.598 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHhhh
Q 035231 4 LVTTLVFLVIGIIASL 19 (70)
Q Consensus 4 ~~~T~~~~~v~~~~~~ 19 (70)
+++|.+++++|.....
T Consensus 59 flGT~lLV~~G~Gs~a 74 (340)
T 3iyz_A 59 FLAMLIFVLLSVGSTI 74 (340)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888888876554
No 8
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=13.23 E-value=1.8e+02 Score=15.26 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHhhhhhhhh
Q 035231 4 LVTTLVFLVIGIIASLCTRIC 24 (70)
Q Consensus 4 ~~~T~~~~~v~~~~~~~~~~~ 24 (70)
..++..|.++++++=+.++..
T Consensus 21 ~~~~~~F~~iA~vAH~L~~~w 41 (45)
T 1lgh_B 21 KTTFSAFIILAAVAHVLVWVW 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 346677888888887777643
No 9
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=11.95 E-value=1.8e+02 Score=15.82 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcc
Q 035231 4 LVTTLVFLVIGIIASLCTRICCN 26 (70)
Q Consensus 4 ~~~T~~~~~v~~~~~~~~~~~~~ 26 (70)
..++.+|.++++++=+.++...|
T Consensus 24 ~~~~~~F~~iAvvAH~L~~~wrP 46 (55)
T 1wrg_A 24 TSSILVFFGVAAFAHLLVWIWRP 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677888888888888875433
No 10
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=11.01 E-value=4e+02 Score=18.11 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHhhh
Q 035231 4 LVTTLVFLVIGIIASL 19 (70)
Q Consensus 4 ~~~T~~~~~v~~~~~~ 19 (70)
+++|.++.++|.....
T Consensus 37 flGT~lLv~~G~G~~~ 52 (256)
T 3llq_A 37 FFGTFWLVFGGCGSAV 52 (256)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888877766554
Done!