Query 035231
Match_columns 70
No_of_seqs 100 out of 203
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 16:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035231.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035231hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 36.0 14 0.00098 16.4 2.1 10 43-52 4-13 (26)
2 d1jdla_ a.3.1.1 (A:) Cytochrom 22.5 17 0.0012 20.4 1.4 10 51-60 109-118 (118)
3 d1v54j_ f.23.4.1 (J:) Mitochon 17.3 40 0.0029 17.4 2.1 34 24-57 21-55 (58)
4 d1ijdb_ f.3.1.1 (B:) Light-har 15.4 67 0.0049 15.3 2.6 22 5-26 18-39 (40)
5 d1nkzb_ f.3.1.1 (B:) Light-har 15.3 68 0.005 15.4 2.5 22 5-26 17-38 (41)
6 d1vhra_ c.45.1.1 (A:) VH1-rela 13.9 76 0.0055 18.2 3.0 23 42-65 126-156 (178)
7 d2i9wa2 g.74.1.1 (A:1-39) Hypo 10.8 31 0.0023 16.4 0.3 7 56-62 10-16 (39)
8 d2j9ua1 a.24.28.1 (A:148-241) 10.7 17 0.0013 20.6 -0.8 8 56-63 28-35 (94)
9 d1wffa_ g.80.1.1 (A:) ANUBL1 ( 10.0 21 0.0015 19.9 -0.6 10 56-65 74-83 (85)
10 d1eysh2 f.23.10.1 (H:7-43) Pho 9.8 1E+02 0.0073 14.4 2.1 8 44-51 8-15 (37)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=35.98 E-value=14 Score=16.42 Aligned_cols=10 Identities=10% Similarity=0.734 Sum_probs=7.2
Q ss_pred HHHHHHHHHH
Q 035231 43 TVSCWMMWAI 52 (70)
Q Consensus 43 ~~ccwL~W~~ 52 (70)
....|+||..
T Consensus 4 slaiw~fw~f 13 (26)
T d1rzhh2 4 SLAIYSFWIF 13 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3568999964
No 2
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}
Probab=22.50 E-value=17 Score=20.43 Aligned_cols=10 Identities=40% Similarity=0.889 Sum_probs=7.9
Q ss_pred HHHHHHhhcc
Q 035231 51 AIVYLAQMKP 60 (70)
Q Consensus 51 ~~~YmaQm~P 60 (70)
++.||.+++|
T Consensus 109 liaYL~sl~p 118 (118)
T d1jdla_ 109 VVAYLKQFSP 118 (118)
T ss_dssp HHHHHGGGCC
T ss_pred HHHHHHHhCc
Confidence 4678888888
No 3
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.35 E-value=40 Score=17.42 Aligned_cols=34 Identities=9% Similarity=0.211 Sum_probs=19.7
Q ss_pred hcccC-CCceehhhHHHHHHHHHHHHHHHHHHHHh
Q 035231 24 CCNRG-PSTNLLHLTLVITATVSCWMMWAIVYLAQ 57 (70)
Q Consensus 24 ~~~kg-~~~~l~~~~lv~~a~~ccwL~W~~~YmaQ 57 (70)
..+.| .|+-+.|.+..++.+=-.|-++.+-.++|
T Consensus 21 hLKGG~~D~~LYr~Tm~L~~~G~~~s~~~l~~a~~ 55 (58)
T d1v54j_ 21 HLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASF 55 (58)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344 56677777666555555666665555554
No 4
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=15.44 E-value=67 Score=15.35 Aligned_cols=22 Identities=36% Similarity=0.280 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHhhhhhhhhcc
Q 035231 5 VTTLVFLVIGIIASLCTRICCN 26 (70)
Q Consensus 5 ~~T~~~~~v~~~~~~~~~~~~~ 26 (70)
-||=+|.++++++=+.+..++|
T Consensus 18 dGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 18 DGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC
T ss_pred cchhHHHHHHHHHHHHHHhcCC
Confidence 4677888888888877765443
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=15.32 E-value=68 Score=15.39 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHhhhhhhhhcc
Q 035231 5 VTTLVFLVIGIIASLCTRICCN 26 (70)
Q Consensus 5 ~~T~~~~~v~~~~~~~~~~~~~ 26 (70)
-||=+|.++++++=+.+..++|
T Consensus 17 dGtRvF~~iA~~AH~La~~~tP 38 (41)
T d1nkzb_ 17 DGTRVFLGLALVAHFLAFSATP 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSS
T ss_pred cchHHHHHHHHHHHHHHHHhCc
Confidence 4677888888888877775543
No 6
>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.87 E-value=76 Score=18.16 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=17.4
Q ss_pred HHHHHHHHH--------HHHHHHhhccccccc
Q 035231 42 ATVSCWMMW--------AIVYLAQMKPLIVPI 65 (70)
Q Consensus 42 a~~ccwL~W--------~~~YmaQm~PLi~P~ 65 (70)
+++++|||+ ++-|+.+-.| |.|.
T Consensus 126 ~vv~aYLm~~~~~s~~~A~~~vr~~R~-i~pn 156 (178)
T d1vhra_ 126 TLVIAYLMMRQKMDVKSALSIVRQNRE-IGPN 156 (178)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHSC-CCCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhCCC-CCCC
Confidence 356889998 4778888888 6773
No 7
>d2i9wa2 g.74.1.1 (A:1-39) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=10.82 E-value=31 Score=16.42 Aligned_cols=7 Identities=29% Similarity=0.748 Sum_probs=4.8
Q ss_pred Hhhcccc
Q 035231 56 AQMKPLI 62 (70)
Q Consensus 56 aQm~PLi 62 (70)
.||||=.
T Consensus 10 cq~np~~ 16 (39)
T d2i9wa2 10 CQINPAL 16 (39)
T ss_dssp GGCCTTC
T ss_pred cccCccc
Confidence 4888843
No 8
>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.74 E-value=17 Score=20.56 Aligned_cols=8 Identities=38% Similarity=0.845 Sum_probs=5.8
Q ss_pred Hhhccccc
Q 035231 56 AQMKPLIV 63 (70)
Q Consensus 56 aQm~PLi~ 63 (70)
-|+||+++
T Consensus 28 DqLhPlL~ 35 (94)
T d2j9ua1 28 DQLHPLLA 35 (94)
T ss_dssp HHHHHHHH
T ss_pred hhhchhHH
Confidence 48888764
No 9
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.96 E-value=21 Score=19.86 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=6.8
Q ss_pred Hhhccccccc
Q 035231 56 AQMKPLIVPI 65 (70)
Q Consensus 56 aQm~PLi~P~ 65 (70)
.+=||+|+|.
T Consensus 74 ~k~NP~i~p~ 83 (85)
T d1wffa_ 74 EEANPVSGPS 83 (85)
T ss_dssp CCCCCCCCTT
T ss_pred HHHCCccCCC
Confidence 4567887774
No 10
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=9.79 E-value=1e+02 Score=14.44 Aligned_cols=8 Identities=25% Similarity=1.315 Sum_probs=5.1
Q ss_pred HHHHHHHH
Q 035231 44 VSCWMMWA 51 (70)
Q Consensus 44 ~ccwL~W~ 51 (70)
+..|+||+
T Consensus 8 l~ly~Fw~ 15 (37)
T d1eysh2 8 ITIWAFWL 15 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45677775
Done!