BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035233
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W6I|I Chain I, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration
State 4b.
pdb|2W6J|I Chain I, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration
State 5.
pdb|2W6H|I Chain I, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration
State 4a
Length = 51
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 7 VPFWRAAGMTYISYSNICANLVRNCLKEPYKTEAL 41
V +WR AG++YI YS ICA VR+ LK +K A+
Sbjct: 2 VAYWRQAGLSYIRYSQICAKAVRDALKTEFKANAM 36
>pdb|1E79|I Chain I, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8E|I Chain I, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three
Catalytic Sites Occupied)
pdb|2CK3|I Chain I, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|I Chain I, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2V7Q|I Chain I, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|I Chain I, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|R Chain R, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|I Chain I, F1-Atpase In Which All Three Catalytic Sites Contain
Bound Nucleotide, With Magnesium Ion Released In The
Empty Site
Length = 50
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 7 VPFWRAAGMTYISYSNICANLVRNCLKEPYKTEAL 41
V +WR AG++YI YS ICA VR+ LK +K A+
Sbjct: 1 VAYWRQAGLSYIRYSQICAKAVRDALKTEFKANAM 35
>pdb|2XND|I Chain I, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 47
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 7 VPFWRAAGMTYISYSNICANLVRNCLKEPYKTEAL 41
V +WR AG++YI YS ICA VR+ LK +K A+
Sbjct: 1 VAYWRQAGLSYIRYSQICAKAVRDALKTEFKANAM 35
>pdb|2XOK|I Chain I, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|3ZRY|I Chain I, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
Length = 61
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 10 WRAAGMTYISYSNICANLVRNCLKEPYKTEALT-REKVHFSISKWTDG 56
WR AGM+Y +Y N+ A +R+ LK +T ++T R + +++ +G
Sbjct: 3 WRKAGMSYAAYLNVAAQAIRSSLKTELQTASVTNRSQTDAFYTQYKNG 50
>pdb|2HLD|I Chain I, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|R Chain R, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|1 Chain 1, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|I Chain I, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|R Chain R, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|1 Chain 1, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|I Chain I, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp
Synthase
pdb|3OE7|I Chain I, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|R Chain R, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|1 Chain 1, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|I Chain I, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|R Chain R, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|1 Chain 1, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEH|I Chain I, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|R Chain R, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|1 Chain 1, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OFN|I Chain I, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|R Chain R, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3ZIA|I Chain I, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|S Chain S, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 61
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 10 WRAAGMTYISYSNICANLVRNCLKEPYKTEA-LTREKVHFSISKWTDG 56
WR AG++Y +Y N+ A +R+ LK +T + L R + +++ +G
Sbjct: 3 WRKAGISYAAYLNVAAQAIRSSLKTELQTASVLNRSQTDAFYTQYKNG 50
>pdb|4B2Q|I Chain I, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|II Chain i, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 59
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 10 WRAAGMTYISYSNICANLVRNCLKEPYKTEA-LTREKVHFSISKWTDG 56
WR AG++Y +Y N+ A +R+ LK +T + L R + +++ +G
Sbjct: 3 WRKAGISYAAYLNVAAQAIRSSLKTELQTASVLNRSQTDAFYTQYKNG 50
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 12 AAGMTYISYSNICAN-LVRN---CLKEPYKTEALTREKV 46
A G++Y ++SN+C N LVRN KE Y + ++ E +
Sbjct: 92 AVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYI 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.127 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,198,776
Number of Sequences: 62578
Number of extensions: 66792
Number of successful extensions: 120
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 8
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)