BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035233
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96253|ATP5E_ARATH ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis
thaliana GN=At1g51650 PE=1 SV=3
Length = 70
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/69 (89%), Positives = 66/69 (95%)
Query: 1 MASNAAVPFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQK 60
MASNAAVPFWRAAGMTYISYSNICAN+VRNCLKEP+K EALTREKVHFS+SKW DGKPQK
Sbjct: 1 MASNAAVPFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKPQK 60
Query: 61 PTIRSDTPE 69
P +RSDTPE
Sbjct: 61 PVLRSDTPE 69
>sp|Q06450|ATP5E_IPOBA ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas
PE=1 SV=2
Length = 70
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/70 (85%), Positives = 65/70 (92%)
Query: 1 MASNAAVPFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQK 60
MASNAAVPFWRAAGMTYI+YSN+CAN+VRNCLKEPY+ EAL+REKVHFS SKW DGKPQK
Sbjct: 1 MASNAAVPFWRAAGMTYITYSNLCANMVRNCLKEPYRAEALSREKVHFSFSKWVDGKPQK 60
Query: 61 PTIRSDTPEE 70
P IRSDT EE
Sbjct: 61 PAIRSDTGEE 70
>sp|Q41898|ATP5E_MAIZE ATP synthase subunit epsilon, mitochondrial OS=Zea mays PE=3 SV=1
Length = 70
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 62/68 (91%)
Query: 2 ASNAAVPFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQKP 61
A+ AAVPFWRAAGMTYI YSNICA LVRNCLKEP+K+EA +REKVHFSISKWTDGK +KP
Sbjct: 3 ATTAAVPFWRAAGMTYIGYSNICAALVRNCLKEPFKSEAASREKVHFSISKWTDGKQEKP 62
Query: 62 TIRSDTPE 69
T+R+++ +
Sbjct: 63 TVRTESDD 70
>sp|Q75JK6|ATP5E_DICDI ATP synthase subunit epsilon, mitochondrial OS=Dictyostelium
discoideum GN=atp5e PE=3 SV=1
Length = 74
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 6 AVPFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQKPTI 63
A +WRAAG+TY+ Y+NIC VRNCLKEP++ A RE + + +GK I
Sbjct: 2 AGQYWRAAGITYLQYANICGTHVRNCLKEPFRAAAKNREGFISNTVMYQNGKESSTII 59
>sp|Q5VTU8|AT5EL_HUMAN ATP synthase subunit epsilon-like protein, mitochondrial OS=Homo
sapiens GN=ATP5EP2 PE=3 SV=1
Length = 51
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 7 VPFWRAAGMTYISYSNICANLVRNCLKEPYKTEA 40
V +WR AG++YI YS ICA +VR+ LK +K A
Sbjct: 2 VAYWRQAGLSYIRYSQICAKVVRDALKTEFKANA 35
>sp|P05632|ATP5E_BOVIN ATP synthase subunit epsilon, mitochondrial OS=Bos taurus
GN=ATP5E PE=1 SV=4
Length = 51
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 7 VPFWRAAGMTYISYSNICANLVRNCLKEPYKTEAL 41
V +WR AG++YI YS ICA VR+ LK +K A+
Sbjct: 2 VAYWRQAGLSYIRYSQICAKAVRDALKTEFKANAM 36
>sp|P56381|ATP5E_HUMAN ATP synthase subunit epsilon, mitochondrial OS=Homo sapiens
GN=ATP5E PE=1 SV=2
Length = 51
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 7 VPFWRAAGMTYISYSNICANLVRNCLKEPYKTEA 40
V +WR AG++YI YS ICA VR+ LK +K A
Sbjct: 2 VAYWRQAGLSYIRYSQICAKAVRDALKTEFKANA 35
>sp|P56382|ATP5E_MOUSE ATP synthase subunit epsilon, mitochondrial OS=Mus musculus
GN=Atp5e PE=3 SV=2
Length = 52
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 7 VPFWRAAGMTYISYSNICANLVRNCLKEPYKTEA 40
V +WR AG++YI +S ICA VR+ LK +K A
Sbjct: 2 VAYWRQAGLSYIRFSQICAKAVRDALKTEFKANA 35
>sp|P29418|ATP5E_RAT ATP synthase subunit epsilon, mitochondrial OS=Rattus norvegicus
GN=Atp5e PE=1 SV=2
Length = 51
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 7 VPFWRAAGMTYISYSNICANLVRNCLKEPYKTEA 40
V +WR AG++YI +S ICA VR+ LK +K A
Sbjct: 2 VAYWRQAGLSYIRFSQICAKAVRDALKTEFKANA 35
>sp|P34539|ATP5E_CAEEL Putative ATP synthase subunit epsilon, mitochondrial
OS=Caenorhabditis elegans GN=R05D3.6 PE=3 SV=1
Length = 54
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 10 WRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGK 57
WRAAG+ Y+ YS I A +VR C K + + + + W +GK
Sbjct: 4 WRAAGLNYVRYSQIAAQVVRQCTKGGANVK---KPQATLKTTAWENGK 48
>sp|P87316|ATP5E_SCHPO Putative ATP synthase subunit epsilon, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=atp15 PE=3 SV=1
Length = 67
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 15 MTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQK 60
+Y Y++IC+ VR LK K E T F ++W +G +K
Sbjct: 9 FSYSKYASICSQTVRQALKPEIKNEVKTHGDAEFLYTRWKNGAQEK 54
>sp|P21306|ATP5E_YEAST ATP synthase subunit epsilon, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ATP15 PE=1
SV=2
Length = 62
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 10 WRAAGMTYISYSNICANLVRNCLKEPYKTEA-LTREKVHFSISKWTDG 56
WR AG++Y +Y N+ A +R+ LK +T + L R + +++ +G
Sbjct: 4 WRKAGISYAAYLNVAAQAIRSSLKTELQTASVLNRSQTDAFYTQYKNG 51
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.127 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,746,505
Number of Sequences: 539616
Number of extensions: 802486
Number of successful extensions: 1454
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1442
Number of HSP's gapped (non-prelim): 15
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)