BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035240
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38385|SC61G_ORYSJ Protein transport protein Sec61 subunit gamma OS=Oryza sativa
subsp. japonica GN=Os02g0178400 PE=3 SV=1
Length = 69
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 67/69 (97%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MDA+D+V DPLR+FAKDS+RLVKRCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1 MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIP 60
Query: 61 INNIIVGSG 69
INNIIVGSG
Sbjct: 61 INNIIVGSG 69
>sp|P0DI75|S61G2_ARATH Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis
thaliana GN=SEC61G2 PE=3 SV=1
Length = 69
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/68 (92%), Positives = 66/68 (97%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MDAID+V DPLRDFAKDS+RLVKRCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1 MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60
Query: 61 INNIIVGS 68
INNIIVG+
Sbjct: 61 INNIIVGA 68
>sp|P0DI74|S61G1_ARATH Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis
thaliana GN=SEC61G1 PE=3 SV=1
Length = 69
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/68 (92%), Positives = 66/68 (97%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MDAID+V DPLRDFAKDS+RLVKRCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1 MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60
Query: 61 INNIIVGS 68
INNIIVG+
Sbjct: 61 INNIIVGA 68
>sp|Q9SMP2|S61G3_ARATH Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis
thaliana GN=SEC61G3 PE=3 SV=1
Length = 69
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 64/69 (92%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
M+AID+ DPLRDFAK S+RLV+RCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKL+FIP
Sbjct: 1 MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIP 60
Query: 61 INNIIVGSG 69
INNIIVGS
Sbjct: 61 INNIIVGSS 69
>sp|Q962X7|SC61G_BRABE Protein transport protein Sec61 subunit gamma OS=Branchiostoma
belcheri GN=SEC61G PE=3 SV=1
Length = 68
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 54/68 (79%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD + +P R FAKDS RLVKRC KPDRKEF K+A TAIGF +MGF+GFFVKLI IP
Sbjct: 1 MDQLVQFVEPARQFAKDSYRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNIIVGS
Sbjct: 61 INNIIVGS 68
>sp|Q7Z1B8|S61G1_GRYOR Protein transport protein Sec61 subunit gamma OS=Gryllotalpa
orientalis GN=SEC61G PE=3 SV=1
Length = 68
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 55/68 (80%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD + +P R FAKDS+RLVKRC KPDRKEF K+A TAIGF +MGF+GFFVKLI IP
Sbjct: 1 MDQVTKFIEPGRQFAKDSIRLVKRCTKPDRKEFQKIAVATAIGFCIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNIIVGS
Sbjct: 61 INNIIVGS 68
>sp|Q66KU2|SC61G_XENLA Protein transport protein Sec61 subunit gamma OS=Xenopus laevis
GN=sec61g PE=3 SV=1
Length = 68
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 54/68 (79%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD + +P R F KDS+RLVKRC KPDRKEF K+A TAIGF +MGF+GFFVKLI IP
Sbjct: 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNIIVGS
Sbjct: 61 INNIIVGS 68
>sp|Q19967|SC61G_CAEEL Protein transport protein Sec61 subunit gamma OS=Caenorhabditis
elegans GN=emo-1 PE=2 SV=1
Length = 68
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 54/68 (79%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD + +P R F+KDS RLVKRC KPDRKE+ K+A TAIGF +MGF+GFFVKLI IP
Sbjct: 1 MDQFQALIEPARQFSKDSYRLVKRCTKPDRKEYQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNIIVG+
Sbjct: 61 INNIIVGA 68
>sp|Q8I7D9|SC61G_CIOIN Protein transport protein Sec61 subunit gamma OS=Ciona
intestinalis GN=SEC61G PE=3 SV=1
Length = 68
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 55/68 (80%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD + +P + FAKDS+RLVKRC KPDRKEF K+A TAIGF +MGF+GFFVKLI IP
Sbjct: 1 MDQVMAWVEPGKQFAKDSIRLVKRCTKPDRKEFQKIAVATAIGFAIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNIIVGS
Sbjct: 61 INNIIVGS 68
>sp|Q7T207|SC61G_HARAN Protein transport protein Sec61 subunit gamma OS=Harpagifer
antarcticus GN=sec61g PE=3 SV=1
Length = 68
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 53/68 (77%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD + +P R F KDS+RLVKRC KPDRKEF KVA TAIGF +MGF+GFFVKLI IP
Sbjct: 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKVAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNIIVG
Sbjct: 61 INNIIVGG 68
>sp|Q7SZU9|SC61G_GADMO Protein transport protein Sec61 subunit gamma OS=Gadus morhua
GN=sec61g PE=3 SV=1
Length = 68
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 53/68 (77%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD I +P R F KDS+RLVKRC KPDRKEF K+A TAIGF +MGF+GFFVKLI IP
Sbjct: 1 MDQIMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNIIVG
Sbjct: 61 INNIIVGG 68
>sp|Q9V668|S61G1_DROME Protein transport protein Sec61 gamma-1 subunit OS=Drosophila
melanogaster GN=SEC61G1 PE=3 SV=1
Length = 68
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 55/68 (80%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD + +P R FAKDS+RLVKRC KPDRKEF K+A TA+GF +MGF+GFFVKLI IP
Sbjct: 1 MDKVVKFAEPGRAFAKDSIRLVKRCTKPDRKEFQKIAIATAVGFAIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNIIVGS
Sbjct: 61 INNIIVGS 68
>sp|P60060|SC61G_MOUSE Protein transport protein Sec61 subunit gamma OS=Mus musculus
GN=Sec61g PE=2 SV=1
Length = 68
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 53/68 (77%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD + +P R F KDS+RLVKRC KPDRKEF K+A TAIGF +MGF+GFFVKLI IP
Sbjct: 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNIIVG
Sbjct: 61 INNIIVGG 68
>sp|P60059|SC61G_HUMAN Protein transport protein Sec61 subunit gamma OS=Homo sapiens
GN=SEC61G PE=2 SV=1
Length = 68
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 53/68 (77%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD + +P R F KDS+RLVKRC KPDRKEF K+A TAIGF +MGF+GFFVKLI IP
Sbjct: 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNIIVG
Sbjct: 61 INNIIVGG 68
>sp|P60058|SC61G_CANFA Protein transport protein Sec61 subunit gamma OS=Canis familiaris
GN=SEC61G PE=1 SV=1
Length = 68
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 53/68 (77%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD + +P R F KDS+RLVKRC KPDRKEF K+A TAIGF +MGF+GFFVKLI IP
Sbjct: 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNIIVG
Sbjct: 61 INNIIVGG 68
>sp|Q3T104|SC61G_BOVIN Protein transport protein Sec61 subunit gamma OS=Bos taurus
GN=SEC61G PE=3 SV=1
Length = 68
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 53/68 (77%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD + +P R F KDS+RLVKRC KPDRKEF K+A TAIGF +MGF+GFFVKLI IP
Sbjct: 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNIIVG
Sbjct: 61 INNIIVGG 68
>sp|Q9VWE9|S61G2_DROME Protein transport protein Sec61 gamma-2 subunit OS=Drosophila
melanogaster GN=Sec61gamma PE=3 SV=1
Length = 68
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 55/68 (80%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD + +P R FAKDS+RLVKRC KPDRKEF K+A TA+GF +MGF+GFFVKLI IP
Sbjct: 1 MDKVVKFAEPGRAFAKDSIRLVKRCTKPDRKEFQKIAIATAVGFCIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNIIVGS
Sbjct: 61 INNIIVGS 68
>sp|Q54JV6|SC61G_DICDI Protein transport protein Sec61 subunit gamma OS=Dictyostelium
discoideum GN=sec61g PE=3 SV=1
Length = 69
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
MD ++ PL+DFAK+S+RL K+C KPD +EF K+A T IGF +MGF+GFFVKLI IP
Sbjct: 1 MDILEETAAPLKDFAKNSIRLFKKCTKPDAQEFQKIALATLIGFAIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
INNI+VG
Sbjct: 61 INNILVGG 68
>sp|Q9C2D4|SC61G_NEUCR Probable protein transport protein Sec61 subunit gamma
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=9G6.310 PE=3 SV=2
Length = 70
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 2 DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPI 61
D I + D R+F KD ++ +K+C KPDR+EF K++ GF++MG VG+ VKLI IP+
Sbjct: 3 DQIQEILDVPREFLKDGIQFIKKCQKPDRREFIKISQAVGTGFLIMGAVGYLVKLIHIPL 62
Query: 62 NNIIVGS 68
N ++VG
Sbjct: 63 NQVLVGG 69
>sp|Q09827|SC61G_SCHPO Probable protein transport protein Sec61 subunit gamma
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sss1 PE=3 SV=1
Length = 70
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 2 DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPI 61
D D++F ++F K+ +KRC KPDRKEF ++ A GFV+MG +G+ +KLI IPI
Sbjct: 3 DNADDLFQIPKNFYKEGSHFIKRCVKPDRKEFLSISKAVATGFVLMGLIGYIIKLIHIPI 62
Query: 62 NNIIVGSG 69
N ++VG
Sbjct: 63 NKVLVGGA 70
>sp|P35179|SC61G_YEAST Protein transport protein SSS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSS1 PE=1 SV=2
Length = 80
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 2 DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPI 61
+ ++ + + +F ++ + + +C KPD KE+TK+ IGF+ +G +G+ +KLI IPI
Sbjct: 16 NQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIHIPI 75
Query: 62 NNIIV 66
+IV
Sbjct: 76 RYVIV 80
>sp|Q8SRW9|SC61G_ENCCU Probable protein transport protein Sec61 subunit gamma
OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU05_0885 PE=3 SV=1
Length = 72
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 18 SLRL-VKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGS 68
S+RL K+C +P KE + R AIG +G +G+ +KLI IPINNIIV S
Sbjct: 17 SIRLFSKKCVRPSGKELSMSIKRHAIGIGFLGILGYAIKLIHIPINNIIVSS 68
>sp|Q6LXB7|SECE_METMP Preprotein translocase subunit SecE OS=Methanococcus maripaludis
(strain S2 / LL) GN=secE PE=3 SV=2
Length = 69
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPI 61
++ + L+DF R++ KP R+E+ ++ T +G ++GFVGF +I +PI
Sbjct: 4 SKLNTTLNGLKDFLHQCRRVLMISRKPTRQEYITISKVTGLGICLLGFVGF---VIHVPI 60
Query: 62 N 62
Sbjct: 61 T 61
>sp|Q12UQ2|SECE_METBU Preprotein translocase subunit SecE OS=Methanococcoides burtonii
(strain DSM 6242) GN=secE PE=3 SV=1
Length = 69
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 16 KDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPI 61
K LR++K KP R+EF ++ G +V+GFVGF + ++ +
Sbjct: 20 KSYLRVLKLSKKPSREEFLMISKVAGAGILVIGFVGFLIYVLLTEV 65
>sp|P58199|SECE_PYRHO Preprotein translocase subunit SecE OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC
100139 / OT-3) GN=secE PE=3 SV=1
Length = 61
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 9 DPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFI 59
+ +R+F K+S R+ KP +E+ K A T +G +V+G VG +++I I
Sbjct: 6 ERVRNFFKESKRVFLVTKKPGWEEYKKAAKITGLGILVIGLVGMLIRIIGI 56
>sp|Q46EU5|SECE_METBF Preprotein translocase subunit SecE OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=secE PE=3 SV=1
Length = 71
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 4 IDNVFDP------LRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGF--FVK 55
+++ F+P + + LR++K KP R+EF +A +G + +G +GF +V
Sbjct: 2 VESTFEPKITAESVGQVIRAHLRVLKLTRKPSREEFLTIAKVAGVGILAVGAIGFIIYVL 61
Query: 56 LIFIP 60
L +P
Sbjct: 62 LTMLP 66
>sp|P58198|SECE_AERPE Preprotein translocase subunit SecE OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=secE PE=3 SV=2
Length = 60
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 6 NVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINN 63
+ D R++ R++ KPD +E++ + +GF ++G +G+ + L +I + +
Sbjct: 2 GIVDIAREYIVAWRRILTLARKPDEEEYSLLLKLNLLGFALVGGIGYLIHLGYIILTS 59
>sp|Q5JH32|SECE_PYRKO Preprotein translocase subunit SecE OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=secE PE=3
SV=1
Length = 61
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 9 DPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLI 57
+ ++ F +S R++ KP KEF A T IG +++G +G +++I
Sbjct: 6 EKVKSFLAESKRVLLVTKKPGMKEFKLAAKITGIGMILIGTIGMIIRII 54
>sp|Q3ITN6|SECE_NATPD Preprotein translocase subunit SecE OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=secE PE=3 SV=1
Length = 57
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 19 LRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGF--FVKLIFIP 60
+R++K P EF+KVA +G +++GF+GF F + F+P
Sbjct: 11 IRVLKLASTPTWDEFSKVATIAGLGILLVGFIGFVIFSIMTFVP 54
>sp|B6YSX5|SECE_THEON Preprotein translocase subunit SecE OS=Thermococcus onnurineus
(strain NA1) GN=secE PE=3 SV=1
Length = 61
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 9 DPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLI 57
+ L++F + R++ KP KEF A T IG +++G +G +++I
Sbjct: 6 EKLKNFFAELRRVLLVTKKPGWKEFKMAAKITGIGMILIGLIGLVIRMI 54
>sp|Q8TI84|SECE_METAC Preprotein translocase subunit SecE OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=secE PE=3 SV=1
Length = 71
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 4 IDNVFDP------LRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGF--FVK 55
+++ F+P + + LR++K KP R+EF +A G + +G +GF +V
Sbjct: 2 VESTFEPNITTKSVGQAIRAHLRVLKLTKKPSREEFLTIAKVAGAGILAVGAIGFIIYVL 61
Query: 56 LIFIP 60
L +P
Sbjct: 62 LTMLP 66
>sp|Q8TX54|SECE_METKA Preprotein translocase subunit SecE OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=secE PE=3 SV=1
Length = 61
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 6 NVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLI 57
+ ++ L +D R+++ KP E+ + A +G +++G VGF +++I
Sbjct: 2 STYEELISLLRDCKRVLRAARKPTWDEYIESAKIAGLGILIVGGVGFLIRVI 53
>sp|Q8PY55|SECE_METMA Preprotein translocase subunit SecE OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=secE PE=3 SV=1
Length = 71
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 16 KDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGF--FVKLIFIP 60
+ LR++K KP R+EF +A G + +G VGF +V L +P
Sbjct: 20 RAHLRVLKLTKKPSREEFLTIAKVAGAGILAVGAVGFIIYVLLTMLP 66
>sp|Q57817|SECE_METJA Preprotein translocase subunit SecE OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=secE PE=1 SV=1
Length = 74
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 5 DNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFV 54
+ + L++F ++ R+ KP + E+ VA TA+G ++G +G+ +
Sbjct: 6 NQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYII 55
>sp|Q9HS72|SECE_HALSA Preprotein translocase subunit SecE OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=secE PE=3
SV=1
Length = 57
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 20 RLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNII 65
R+++ P +EF+++A G +++G +GF V LI I ++I
Sbjct: 12 RVLRLASTPSWEEFSQIAKIAGAGILLIGAIGFLVFLIMGGIVSVI 57
>sp|B0R382|SECE_HALS3 Preprotein translocase subunit SecE OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=secE PE=3 SV=1
Length = 57
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 20 RLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNII 65
R+++ P +EF+++A G +++G +GF V LI I ++I
Sbjct: 12 RVLRLASTPSWEEFSQIAKIAGAGILLIGAIGFLVFLIMGGIVSVI 57
>sp|Q18KS3|SECE_HALWD Preprotein translocase subunit SecE OS=Haloquadratum walsbyi
(strain DSM 16790) GN=secE PE=3 SV=1
Length = 57
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 16 KDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFV 54
+R++K P EF+++ G V +GF+GF +
Sbjct: 8 SSYVRVLKLASTPSWNEFSQIGLIAGAGIVFVGFLGFLI 46
>sp|Q5V456|SECE_HALMA Preprotein translocase subunit SecE OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=secE PE=3 SV=1
Length = 59
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 19 LRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGF--FVKLIFIP 60
+R++K P +EF+++A G ++G +GF F + F+P
Sbjct: 11 IRVLKLASTPSWEEFSQIAKIAGAGIALVGLLGFIIFAVMTFVP 54
>sp|O29714|SECE_ARCFU Preprotein translocase subunit SecE OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=secE PE=3 SV=1
Length = 66
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVA-FRTAIGFVVMGFVGFFVKLI 57
MD + ++ K+ ++K KPD +EF+ A A+ F+V GFVGF + ++
Sbjct: 1 MDISGMQINEVQSKLKEYYNVLKMARKPDWEEFSMTAKVALAVMFIV-GFVGFVIYIL 57
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.334 0.151 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,233,989
Number of Sequences: 539616
Number of extensions: 664017
Number of successful extensions: 1922
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1878
Number of HSP's gapped (non-prelim): 45
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)