Query 035240
Match_columns 69
No_of_seqs 101 out of 255
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 16:59:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_B SEC61gamma, protein tra 100.0 7E-39 2.4E-43 194.7 5.8 68 1-68 1-68 (68)
2 2ww9_B Protein transport prote 100.0 3.8E-36 1.3E-40 187.6 6.8 66 1-66 15-80 (80)
3 1rh5_B Preprotein translocase 100.0 4E-33 1.4E-37 171.6 5.3 66 2-67 3-68 (74)
4 3mp7_B Preprotein translocase 99.9 1.1E-28 3.8E-33 147.0 4.6 58 5-62 2-59 (61)
5 3bo0_B Preprotein translocase 99.6 1.9E-16 6.6E-21 93.0 4.2 61 5-65 4-64 (65)
6 3dl8_C SECE; RECA-type ATPase 93.9 0.04 1.4E-06 31.8 2.6 50 9-58 2-51 (65)
7 3hd7_A Vesicle-associated memb 93.5 0.26 8.9E-06 29.9 5.9 49 2-50 33-81 (91)
8 3din_D Preprotein translocase 87.3 0.04 1.4E-06 31.8 -2.0 50 9-58 2-51 (65)
9 2zjs_E Preprotein translocase 85.0 0.12 4E-06 29.3 -0.7 50 9-58 3-52 (60)
10 3bo0_B Preprotein translocase 81.4 4.3 0.00015 22.6 5.0 50 10-59 5-55 (65)
11 3j01_B Preprotein translocase 79.9 0.19 6.6E-06 32.1 -1.3 49 11-59 57-105 (116)
12 2da7_A Zinc finger homeobox pr 66.2 4.8 0.00016 23.9 2.6 24 19-42 21-44 (71)
13 2kog_A Vesicle-associated memb 64.9 0.31 1.1E-05 31.1 -3.0 26 17-42 76-101 (119)
14 3kb9_A EPI-isozizaene synthase 61.0 38 0.0013 24.1 7.1 46 5-50 180-228 (382)
15 3hd7_B Syntaxin-1A; membrane p 60.7 26 0.00088 21.4 5.7 31 2-32 52-82 (109)
16 1ysm_A Calcyclin-binding prote 54.0 32 0.0011 20.3 4.9 31 8-38 5-35 (77)
17 1pp9_D Cytochrome C-1, cytochr 52.0 59 0.002 22.9 6.7 46 10-55 178-223 (241)
18 2a26_A Calcyclin-binding prote 49.7 19 0.00065 19.7 3.1 31 8-38 6-36 (50)
19 1s0p_A CAP, adenylyl cyclase-a 49.7 23 0.0008 23.8 4.1 22 17-38 43-64 (176)
20 3nau_A Zinc fingers and homeob 49.0 23 0.0008 20.4 3.6 27 16-42 17-43 (66)
21 3cx5_D Cytochrome C1, heme pro 47.5 72 0.0025 22.6 6.7 46 10-55 182-227 (248)
22 2hz8_A De novo designed DIIRON 47.1 24 0.00083 22.5 3.7 43 1-43 1-43 (115)
23 2qjy_B Cytochrome C1; cytochro 46.6 79 0.0027 22.7 6.7 46 10-55 203-248 (269)
24 2yiu_B Cytochrome C1, heme pro 46.0 79 0.0027 22.6 6.7 46 10-55 204-249 (263)
25 4dnd_A Syntaxin-10, SYN10; str 45.8 15 0.00053 23.4 2.7 32 4-35 36-67 (130)
26 1zrt_D Cytochrome C1; cytochro 45.4 80 0.0027 22.5 6.7 47 9-55 200-246 (258)
27 3v1v_A 2-MIB synthase, 2-methy 45.2 14 0.00048 27.5 2.7 49 4-53 257-308 (433)
28 3cx5_E Cytochrome B-C1 complex 40.4 53 0.0018 21.6 4.7 36 25-60 17-52 (185)
29 3arc_J Photosystem II reaction 40.0 39 0.0013 18.0 3.3 18 38-55 13-30 (40)
30 3n0f_A Isoprene synthase; terp 39.1 84 0.0029 24.4 6.3 18 26-43 391-408 (555)
31 3io1_A Aminobenzoyl-glutamate 36.7 25 0.00086 25.2 2.9 40 2-41 3-42 (445)
32 3l9k_W Dynein intermediate cha 36.2 35 0.0012 17.8 2.7 18 8-25 12-29 (38)
33 3kpe_B Fusion glycoprotein F0; 34.9 45 0.0015 17.7 3.0 22 2-23 12-33 (39)
34 2ecc_A Homeobox and leucine zi 34.7 28 0.00097 20.3 2.4 23 20-42 20-42 (76)
35 1sfc_A VAMP 2, protein (synapt 34.1 18 0.00063 21.8 1.5 37 2-38 58-94 (96)
36 3m00_A Aristolochene synthase; 33.0 89 0.003 24.2 5.6 18 26-43 389-406 (550)
37 1gl2_A Endobrevin; membrane pr 31.3 60 0.002 17.9 3.3 25 3-27 38-62 (65)
38 1g2c_B Fusion protein (F); mem 30.7 57 0.0019 17.6 3.0 22 2-23 17-38 (43)
39 2nps_A VAMP-4, vesicle-associa 29.7 17 0.00057 20.8 0.8 34 3-36 37-70 (74)
40 2q67_A Potassium channel prote 29.2 67 0.0023 19.2 3.6 19 35-53 25-43 (114)
41 2kog_A Vesicle-associated memb 28.7 92 0.0031 19.3 4.2 40 6-48 72-111 (119)
42 2nwv_A XISI protein-like; YP_3 28.6 44 0.0015 21.2 2.7 21 1-21 2-22 (114)
43 3g4d_A (+)-delta-cadinene synt 28.3 69 0.0024 24.9 4.2 16 26-41 393-408 (554)
44 1n7s_A Vesicle-associated memb 28.0 51 0.0017 18.0 2.6 25 3-27 33-57 (63)
45 2ong_A 4S-limonene synthase; m 27.3 1.9E+02 0.0064 22.0 6.4 17 25-41 381-397 (543)
46 3b5n_A Synaptobrevin homolog 1 26.6 55 0.0019 17.8 2.6 25 3-27 31-55 (61)
47 3d7q_A XISI protein-like; stru 25.9 42 0.0014 21.2 2.2 21 1-21 2-22 (112)
48 1ps1_A Pentalenene synthase; a 24.6 1.7E+02 0.0057 19.8 6.1 25 26-50 161-186 (337)
49 2oo2_A Hypothetical protein AF 24.3 67 0.0023 19.3 2.8 20 6-25 6-25 (86)
50 3k6q_A Putative ligand binding 24.0 38 0.0013 22.3 1.8 30 3-32 83-113 (139)
51 1n1b_A (+)-bornyl diphosphate 23.8 2.5E+02 0.0084 21.5 6.6 17 25-41 387-403 (549)
52 2v52_M MKL/myocardin-like prot 23.8 53 0.0018 16.6 2.0 13 23-35 11-23 (32)
53 2nvm_A FDXN element excision c 23.4 62 0.0021 21.0 2.7 22 1-22 2-23 (126)
54 4fa8_E Macrophage colony-stimu 23.2 64 0.0022 21.5 2.8 25 6-30 111-136 (147)
55 1dtc_A Acetyl-delta-toxin; NMR 23.1 62 0.0021 15.7 2.0 15 46-60 5-19 (26)
56 2kmu_A ATP-dependent DNA helic 22.6 80 0.0028 17.5 2.8 25 11-35 9-35 (56)
57 2pq4_B Periplasmic nitrate red 22.6 85 0.0029 15.7 2.7 17 27-43 2-18 (35)
58 2nlv_A XISI protein-like; XISI 22.4 42 0.0014 21.2 1.7 20 1-20 2-21 (112)
59 3p5p_A Taxadiene synthase; cla 22.2 1.5E+02 0.0052 23.8 5.2 16 26-41 593-608 (764)
60 1gl2_B Syntaxin 7; membrane pr 22.0 99 0.0034 16.9 3.1 26 2-27 40-65 (65)
61 1di1_A Aristolochene synthase; 21.6 1.8E+02 0.0062 19.1 6.9 25 26-50 150-174 (300)
62 3sdr_A Alpha-bisabolene syntha 21.4 1.6E+02 0.0055 23.9 5.2 16 26-41 652-667 (817)
63 3s9v_A Abietadiene synthase, c 21.2 1.7E+02 0.0058 23.6 5.3 16 26-41 624-639 (785)
64 2da3_A Alpha-fetoprotein enhan 21.0 1.1E+02 0.0038 16.7 3.2 23 20-42 34-56 (80)
65 3a03_A T-cell leukemia homeobo 20.8 1E+02 0.0034 15.9 3.1 23 20-42 14-36 (56)
66 2e19_A Transcription factor 8; 20.0 85 0.0029 17.0 2.5 23 20-42 20-42 (64)
No 1
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=7e-39 Score=194.71 Aligned_cols=68 Identities=69% Similarity=1.184 Sum_probs=67.1
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 035240 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGS 68 (69)
Q Consensus 1 m~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~niivg~ 68 (69)
||+++++.|++++|++||+|++++|+|||||||+++++++++||++||+|||+|||||+||||++|||
T Consensus 1 ~~~~~~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~IklI~ipinniivg~ 68 (68)
T 2wwb_B 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG 68 (68)
T ss_dssp CCSSSSSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHHHHHGGGTSCSSCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999997
No 2
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=100.00 E-value=3.8e-36 Score=187.63 Aligned_cols=66 Identities=33% Similarity=0.775 Sum_probs=59.4
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 035240 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIV 66 (69)
Q Consensus 1 m~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~niiv 66 (69)
||+++++.|++++|++||+|++++|+|||||||+++++++++||++||+|||+|||||+||||+||
T Consensus 15 ~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIkLI~iPInnIiv 80 (80)
T 2ww9_B 15 NNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIHIPIRYVIV 80 (80)
T ss_dssp ------CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 589999999999999999999999999999999999999999999999999999999999999986
No 3
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=99.98 E-value=4e-33 Score=171.62 Aligned_cols=66 Identities=23% Similarity=0.461 Sum_probs=55.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 035240 2 DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVG 67 (69)
Q Consensus 2 ~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~niivg 67 (69)
|.++++.|++++|++||+|++++|+|||||||+++++++++||++||+|||+||++|+||||+|..
T Consensus 3 ~~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIkli~ipIn~ii~~ 68 (74)
T 1rh5_B 3 TDFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGILKP 68 (74)
T ss_dssp ---------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 578889999999999999999999999999999999999999999999999999999999999863
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=99.95 E-value=1.1e-28 Score=146.97 Aligned_cols=58 Identities=24% Similarity=0.495 Sum_probs=50.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035240 5 DNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPIN 62 (69)
Q Consensus 5 ~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~ 62 (69)
.++.|++++|++||+|++++|+|||||||+++++++++||++||++||+||++|+-++
T Consensus 2 ~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikli~~~l~ 59 (61)
T 3mp7_B 2 AELQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLIRIVGILIL 59 (61)
T ss_dssp ------CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999999999999999999999998765
No 5
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=99.63 E-value=1.9e-16 Score=92.95 Aligned_cols=61 Identities=21% Similarity=0.412 Sum_probs=58.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035240 5 DNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNII 65 (69)
Q Consensus 5 ~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~nii 65 (69)
.++.+.++|+.+|++|+...|+||||+||.++++.+++|++++|++||+++++++++++++
T Consensus 4 ~~~~~f~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~lid~~i~~~l 64 (65)
T 3bo0_B 4 KATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHC
T ss_pred chHHHHHHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4578889999999999999999999999999999999999999999999999999999865
No 6
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=93.92 E-value=0.04 Score=31.84 Aligned_cols=50 Identities=24% Similarity=0.352 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240 9 DPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIF 58 (69)
Q Consensus 9 e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ 58 (69)
+.+.+|++|.+.=+|+.+=|+|+|-.+...++.+-.+++++.=+.+-.++
T Consensus 2 ~k~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~v~i~~~~i~~vD~~~ 51 (65)
T 3dl8_C 2 EKLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTF 51 (65)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999888888777777766555544433
No 7
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=93.54 E-value=0.26 Score=29.91 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=39.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 035240 2 DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFV 50 (69)
Q Consensus 2 ~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~I 50 (69)
|+++.+.+...+.-.++..|-+.++|=.|+-+.+..|...+-.+++-++
T Consensus 33 ekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~i 81 (91)
T 3hd7_A 33 QKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII 81 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888899999999999999999999999999876544433333
No 8
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=87.27 E-value=0.04 Score=31.83 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240 9 DPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIF 58 (69)
Q Consensus 9 e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ 58 (69)
+.+.+|++|.+.=+|+.+=|+|+|-.+...++.+-.++++++=+.+-.++
T Consensus 2 ~~~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~~~i~~~~i~~vD~~~ 51 (65)
T 3din_D 2 EKLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIF 51 (65)
T ss_dssp --------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888999889999999999988887777777666666555444433
No 9
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=85.01 E-value=0.12 Score=29.27 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240 9 DPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIF 58 (69)
Q Consensus 9 e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ 58 (69)
+.+.+|++|.+.=+|+.+=|+|+|-.+...++.+-.++++++=+.+-.++
T Consensus 3 ~~~~~f~~~v~~ElkKV~WPtr~e~~~~t~vViv~v~i~~~~~~~vD~~~ 52 (60)
T 2zjs_E 3 ARLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVF 52 (60)
T ss_dssp ---------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999889999999999999988888887777777666655544
No 10
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=81.43 E-value=4.3 Score=22.61 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035240 10 PLRDFAKDSLRLVKRCHKPDRKE-FTKVAFRTAIGFVVMGFVGFFVKLIFI 59 (69)
Q Consensus 10 ~~~~f~~~~~r~lk~~~KPd~~E-f~~~~k~~~lG~~i~G~IGfiIklI~i 59 (69)
.+.+|++|.+.=+++...|+|++ .....+++-.-.+.+.++|++-.++..
T Consensus 5 ~~~~f~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~l 55 (65)
T 3bo0_B 5 ATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHV 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 46799999999999999999965 466677788888888889988766653
No 11
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Probab=79.91 E-value=0.19 Score=32.13 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035240 11 LRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFI 59 (69)
Q Consensus 11 ~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~i 59 (69)
+.+|++|.+.=+|+.+=|+|+|-.+...++.+-.++++++=+.+-.++.
T Consensus 57 ~~~F~kev~~ElkKV~WPtr~E~~~~T~vViv~vii~al~l~~vD~~~~ 105 (116)
T 3j01_B 57 TVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILV 105 (116)
T ss_dssp TTTCSSSHHHHHHHHHTTTTTSCHHHHHHHHTTHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhheeeCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888899999999999999888887777777665555544443
No 12
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.22 E-value=4.8 Score=23.94 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH
Q 035240 19 LRLVKRCHKPDRKEFTKVAFRTAI 42 (69)
Q Consensus 19 ~r~lk~~~KPd~~Ef~~~~k~~~l 42 (69)
+.-.....+|+.+|..++|..+++
T Consensus 21 k~yF~~n~~Ps~eei~~LA~~lgL 44 (71)
T 2da7_A 21 KAYYAMNMEPNSDELLKISIAVGL 44 (71)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHTC
T ss_pred HHHHHhCCCCCHHHHHHHHHHhCC
Confidence 334566799999999999988765
No 13
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=64.87 E-value=0.31 Score=31.09 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035240 17 DSLRLVKRCHKPDRKEFTKVAFRTAI 42 (69)
Q Consensus 17 ~~~r~lk~~~KPd~~Ef~~~~k~~~l 42 (69)
++..|-+.++|=.++-+++-.|..++
T Consensus 76 ~S~~F~k~A~kl~rkmwwkn~K~~ii 101 (119)
T 2kog_A 76 GASQFETSAAKLKRKYWWKNLKMMII 101 (119)
T ss_dssp SSHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555443
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=60.95 E-value=38 Score=24.15 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=27.5
Q ss_pred hhhhhhHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 035240 5 DNVFDPLRDFAKDSLRLVK---RCHKPDRKEFTKVAFRTAIGFVVMGFV 50 (69)
Q Consensus 5 ~~~~e~~~~f~~~~~r~lk---~~~KPd~~Ef~~~~k~~~lG~~i~G~I 50 (69)
+.+.+..+++++.+..=.+ .-..|+-+||......+.-.-.++.++
T Consensus 180 ~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~ 228 (382)
T 3kb9_A 180 ARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLL 228 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHH
Confidence 3445555555555544322 234799999999998876554444443
No 15
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=60.70 E-value=26 Score=21.35 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=23.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCHHH
Q 035240 2 DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKE 32 (69)
Q Consensus 2 ~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~E 32 (69)
|.+|+-++...+.+++..+=++++.|--++-
T Consensus 52 d~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~ 82 (109)
T 3hd7_B 52 DRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 82 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667778888899999999888886544433
No 16
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=53.97 E-value=32 Score=20.33 Aligned_cols=31 Identities=6% Similarity=0.111 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 035240 8 FDPLRDFAKDSLRLVKRCHKPDRKEFTKVAF 38 (69)
Q Consensus 8 ~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k 38 (69)
++.++.-+++.++++..|+.|.-+++...-+
T Consensus 5 ~eeL~~DLeEl~~Ll~~AkR~rVk~~L~~ei 35 (77)
T 1ysm_A 5 LEELQKDLEEVKVLLEKSTRKRLRDTLTSEK 35 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 6778889999999999999999999876543
No 17
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=51.99 E-value=59 Score=22.88 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240 10 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVK 55 (69)
Q Consensus 10 ~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIk 55 (69)
...+..+|-..||.-+..|..+|=+++-.-+.+-++++.++.|..|
T Consensus 178 ~~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~y~~k 223 (241)
T 1pp9_D 178 TMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMK 223 (241)
T ss_dssp CHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999988888777777777777665
No 18
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=49.67 E-value=19 Score=19.74 Aligned_cols=31 Identities=6% Similarity=0.076 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 035240 8 FDPLRDFAKDSLRLVKRCHKPDRKEFTKVAF 38 (69)
Q Consensus 8 ~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k 38 (69)
++.++.-+.+.++++..|+.|.-+++.+.-+
T Consensus 6 ~eeL~~DL~El~~Ll~~AkR~rVk~~L~~ei 36 (50)
T 2a26_A 6 SEELQKDLEEVKVLLEKATRKRVRDALTAEK 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4668888999999999999999988876543
No 19
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=49.66 E-value=23 Score=23.81 Aligned_cols=22 Identities=9% Similarity=0.234 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH
Q 035240 17 DSLRLVKRCHKPDRKEFTKVAF 38 (69)
Q Consensus 17 ~~~r~lk~~~KPd~~Ef~~~~k 38 (69)
+...+-..|+|||.++|...++
T Consensus 43 ~~L~~as~~kKP~~~~~~~lL~ 64 (176)
T 1s0p_A 43 ALINTASQSKKPSQETLLELIK 64 (176)
T ss_dssp HHHHHHHHEECCCHHHHHHHTH
T ss_pred HHHHHHHhcCCCCchhHHHHHH
Confidence 3344556789999888775544
No 20
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=48.98 E-value=23 Score=20.37 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035240 16 KDSLRLVKRCHKPDRKEFTKVAFRTAI 42 (69)
Q Consensus 16 ~~~~r~lk~~~KPd~~Ef~~~~k~~~l 42 (69)
..-.+....+..||.+|...+|..+++
T Consensus 17 ~~LE~~F~~~~YPs~~er~eLA~~tgL 43 (66)
T 3nau_A 17 AHLKASFLQSQFPDDAEVYRLIEVTGL 43 (66)
T ss_dssp HHHHHHHHGGGSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCc
Confidence 344556778999999999999998875
No 21
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=47.54 E-value=72 Score=22.56 Aligned_cols=46 Identities=22% Similarity=0.448 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240 10 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVK 55 (69)
Q Consensus 10 ~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIk 55 (69)
...+..+|-..||.-+..|..+|=+++-.-+.+-++++.++.|..|
T Consensus 182 ~~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~y~~k 227 (248)
T 3cx5_D 182 TTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVK 227 (248)
T ss_dssp CHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999988888777777777777664
No 22
>2hz8_A De novo designed DIIRON protein; four-helix bundle, de novo protein; NMR {Escherichia coli} PDB: 2lfd_A 2lff_A
Probab=47.11 E-value=24 Score=22.51 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=36.2
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 035240 1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIG 43 (69)
Q Consensus 1 m~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG 43 (69)
||.+..++..-++-++-++.++++.++=+.+|+.+..+..--+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~lIr~~ika 43 (115)
T 2hz8_A 1 MDELRELLKAEQQAIKIYKEVLKKAKEGDEQELARLIQEIVKA 43 (115)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHTTTHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 7888888888889999999999999999999988877655433
No 23
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=46.56 E-value=79 Score=22.71 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240 10 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVK 55 (69)
Q Consensus 10 ~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIk 55 (69)
...+..+|-..||.-+..|..+|=+++-..+.+-++++.++.|..|
T Consensus 203 t~~q~a~DVvaFL~waaEP~~~~Rk~lG~~Vl~fL~il~~l~y~~k 248 (269)
T 2qjy_B 203 SVHAMAEDVSAFLMWAAEPKLMARKQAGFTAVMFLTVLSVLLYLTN 248 (269)
T ss_dssp CHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999988877777777777777655
No 24
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=46.01 E-value=79 Score=22.60 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240 10 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVK 55 (69)
Q Consensus 10 ~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIk 55 (69)
...+..+|-..||.-+..|..+|=+++-.-+.+-++++.++.|..|
T Consensus 204 t~~q~a~DVvaFL~waaEP~~~~Rk~lG~~vl~fL~il~~l~y~~k 249 (263)
T 2yiu_B 204 TVDQMATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLYLTN 249 (263)
T ss_dssp CHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999988777766666666666666654
No 25
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=45.79 E-value=15 Score=23.37 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=18.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 035240 4 IDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTK 35 (69)
Q Consensus 4 ~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~ 35 (69)
+++-++.++..+..|.|+..-.+-|+.+||..
T Consensus 36 Vq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~ 67 (130)
T 4dnd_A 36 VQKAVNTARGLYQRWCELLQESAAVGREELDW 67 (130)
T ss_dssp HHHHHHHHHHHHHHHHHC---------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcchHHHHH
Confidence 45567778899999999999888888888843
No 26
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=45.38 E-value=80 Score=22.48 Aligned_cols=47 Identities=6% Similarity=0.169 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240 9 DPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVK 55 (69)
Q Consensus 9 e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIk 55 (69)
+...+..+|-..||.-+.-|..+|=+++-..+.+-++++.++.|..|
T Consensus 200 at~~q~a~DVv~FL~waaEP~~~~Rk~~G~~vl~fL~il~~l~y~~k 246 (258)
T 1zrt_D 200 ATVDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVMLYLTN 246 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999888877777777777777655
No 27
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=45.16 E-value=14 Score=27.53 Aligned_cols=49 Identities=10% Similarity=-0.027 Sum_probs=28.3
Q ss_pred hhhhhhhHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240 4 IDNVFDPLRDFAKDSLRLVK---RCHKPDRKEFTKVAFRTAIGFVVMGFVGFF 53 (69)
Q Consensus 4 ~~~~~e~~~~f~~~~~r~lk---~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfi 53 (69)
.+.+.+..+++++.|.+=.+ .-..|+-+||....+.++.+.. +.++.|+
T Consensus 257 ~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~sg~~p~-~~l~e~~ 308 (433)
T 3v1v_A 257 SDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNNFRPC-PTITDTV 308 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSSSTTT-GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhHHHH-HHHHHHH
Confidence 34445555555554443222 2457999999999998854422 2344443
No 28
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=40.44 E-value=53 Score=21.59 Aligned_cols=36 Identities=6% Similarity=-0.086 Sum_probs=26.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035240 25 CHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60 (69)
Q Consensus 25 ~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ip 60 (69)
...++|..|+..+-.++.+...+|..+-+..++..+
T Consensus 17 ~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (185)
T 3cx5_E 17 NDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSM 52 (185)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 345679999998877776667777777777776653
No 29
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=39.98 E-value=39 Score=18.04 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035240 38 FRTAIGFVVMGFVGFFVK 55 (69)
Q Consensus 38 k~~~lG~~i~G~IGfiIk 55 (69)
-.+..|++++|++|-+.+
T Consensus 13 vgtv~G~~vi~~~giFfy 30 (40)
T 3arc_J 13 VATVAGMGVIVIVGLFFY 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhhhhheeeEEEe
Confidence 356678889999998865
No 30
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=39.07 E-value=84 Score=24.36 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=14.8
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 035240 26 HKPDRKEFTKVAFRTAIG 43 (69)
Q Consensus 26 ~KPd~~Ef~~~~k~~~lG 43 (69)
..|+-|||+..+.++.-+
T Consensus 391 yvPT~EEYl~na~vSsg~ 408 (555)
T 3n0f_A 391 STPTFDDYFGNAWKSSSG 408 (555)
T ss_dssp CCCCHHHHHHHHHHHTSH
T ss_pred CCCCHHHHHHhcccchhH
Confidence 479999999999986543
No 31
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}
Probab=36.73 E-value=25 Score=25.24 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=33.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035240 2 DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTA 41 (69)
Q Consensus 2 ~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~ 41 (69)
+++++.++..++.+-+++|=|-+.--++.+||.....+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lh~~Pe~~~~E~~t~~~i~~ 42 (445)
T 3io1_A 3 LQLDEYLRQLAPSMTQWRRDFHLHAESGWLEFRTASKVAD 42 (445)
T ss_dssp CCHHHHHHTTHHHHHHHHHHHHHTCCCTTCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 4577788888899999999999999999999998776643
No 32
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=36.17 E-value=35 Score=17.83 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 035240 8 FDPLRDFAKDSLRLVKRC 25 (69)
Q Consensus 8 ~e~~~~f~~~~~r~lk~~ 25 (69)
.+...+|+..+.|++.|+
T Consensus 12 S~~F~~F~~rsskviERA 29 (38)
T 3l9k_W 12 SENFQRFVVRAGRVIERA 29 (38)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 455789999999999887
No 33
>3kpe_B Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus}
Probab=34.89 E-value=45 Score=17.69 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=15.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH
Q 035240 2 DAIDNVFDPLRDFAKDSLRLVK 23 (69)
Q Consensus 2 ~~~~~~~e~~~~f~~~~~r~lk 23 (69)
|++..-++..+.|++.|-++|.
T Consensus 12 ~qV~e~InqS~~~i~~Sd~lL~ 33 (39)
T 3kpe_B 12 SQVNEKINQSLAFIRKSDELLH 33 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666777788888888774
No 34
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=34.70 E-value=28 Score=20.29 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=18.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Q 035240 20 RLVKRCHKPDRKEFTKVAFRTAI 42 (69)
Q Consensus 20 r~lk~~~KPd~~Ef~~~~k~~~l 42 (69)
+.+..+.-||.+|...+|+.++|
T Consensus 20 ~~F~~~~YPs~~er~~LA~~tgL 42 (76)
T 2ecc_A 20 SFFLQCQWARREDYQKLEQITGL 42 (76)
T ss_dssp HHHHHCSSCCHHHHHHHHHHTCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHCc
Confidence 33458899999999999988765
No 35
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=34.08 E-value=18 Score=21.81 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=25.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 035240 2 DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAF 38 (69)
Q Consensus 2 ~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k 38 (69)
|+++.+.+...+.-.++..|-+.++|=.++-+++-.|
T Consensus 58 EkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K 94 (96)
T 1sfc_A 58 QKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567777777777778888888777766666655444
No 36
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=33.03 E-value=89 Score=24.23 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=15.0
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 035240 26 HKPDRKEFTKVAFRTAIG 43 (69)
Q Consensus 26 ~KPd~~Ef~~~~k~~~lG 43 (69)
..|+-|||++.+.++.-.
T Consensus 389 yvPT~EEYl~na~vSsg~ 406 (550)
T 3m00_A 389 YTPPVSEYLSNALATTTY 406 (550)
T ss_dssp CCCCHHHHHHHHTGGGSH
T ss_pred CCCCHHHHHHhccccchH
Confidence 479999999999987643
No 37
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=31.30 E-value=60 Score=17.93 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=17.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhcC
Q 035240 3 AIDNVFDPLRDFAKDSLRLVKRCHK 27 (69)
Q Consensus 3 ~~~~~~e~~~~f~~~~~r~lk~~~K 27 (69)
+++.+.+...+.-.++..|-+.++|
T Consensus 38 kLd~L~~ks~~L~~~s~~F~k~A~~ 62 (65)
T 1gl2_A 38 NLDHLRNKTEDLEATSEHFKTTSQK 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677667777777777777665
No 38
>1g2c_B Fusion protein (F); membrane fusion, pneumovirus, HRSV, viral protein; 2.30A {Human respiratory syncytial virus} SCOP: h.3.2.1
Probab=30.66 E-value=57 Score=17.63 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=14.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH
Q 035240 2 DAIDNVFDPLRDFAKDSLRLVK 23 (69)
Q Consensus 2 ~~~~~~~e~~~~f~~~~~r~lk 23 (69)
|++..-++..+.|++.|-++|.
T Consensus 17 ~qV~esI~qS~~~i~~Sd~lL~ 38 (43)
T 1g2c_B 17 SQVNEKINQSLAFIRKSDELLH 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666777777777764
No 39
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=29.73 E-value=17 Score=20.78 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=20.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 035240 3 AIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKV 36 (69)
Q Consensus 3 ~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~ 36 (69)
+++.+.+...+.-.++..|-+.++|=.++-+++-
T Consensus 37 kLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n 70 (74)
T 2nps_A 37 RLDELQDKSESLSDNATAFSNRSKQLRRQMWWRG 70 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666667777777777777766555544443
No 40
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=29.25 E-value=67 Score=19.19 Aligned_cols=19 Identities=21% Similarity=0.238 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035240 35 KVAFRTAIGFVVMGFVGFF 53 (69)
Q Consensus 35 ~~~k~~~lG~~i~G~IGfi 53 (69)
..+-...+.+++.|.++|.
T Consensus 25 ~~~~~~~~~~~~~g~~~~~ 43 (114)
T 2q67_A 25 QVLFVLTILTLISGTIFYS 43 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566667777887775
No 41
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=28.67 E-value=92 Score=19.35 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=25.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 035240 6 NVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMG 48 (69)
Q Consensus 6 ~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G 48 (69)
.+.+..++|-+.++++=++.- |+.++..+.+.++.++++-
T Consensus 72 ~L~~~S~~F~k~A~kl~rkmw---wkn~K~~iii~~iv~iii~ 111 (119)
T 2kog_A 72 ALQAGASQFETSAAKLKRKYW---WKNLKMMIILGVICAIILI 111 (119)
T ss_dssp CCCSSSHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 445556788888887765554 6777777666665555443
No 42
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=28.56 E-value=44 Score=21.22 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=17.8
Q ss_pred ChhhhhhhhhHHHHHHHHHHH
Q 035240 1 MDAIDNVFDPLRDFAKDSLRL 21 (69)
Q Consensus 1 m~~~~~~~e~~~~f~~~~~r~ 21 (69)
||++++.-+.+++.+.++.++
T Consensus 2 MDkl~~Yr~iI~~iL~~ya~~ 22 (114)
T 2nwv_A 2 MDNVAEYRKLIKQVLTEYDNL 22 (114)
T ss_dssp -CTHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcC
Confidence 899999999999999998874
No 43
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=28.32 E-value=69 Score=24.85 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=13.8
Q ss_pred cCCCHHHHHHHHHHHH
Q 035240 26 HKPDRKEFTKVAFRTA 41 (69)
Q Consensus 26 ~KPd~~Ef~~~~k~~~ 41 (69)
..|+-|||+..+.++.
T Consensus 393 yvPT~EEYl~na~vSs 408 (554)
T 3g4d_A 393 YKPSFEEFKANALPTC 408 (554)
T ss_dssp CCCCHHHHHHHHGGGS
T ss_pred CCCCHHHHHhccceee
Confidence 3799999999998864
No 44
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=27.98 E-value=51 Score=17.99 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=14.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhcC
Q 035240 3 AIDNVFDPLRDFAKDSLRLVKRCHK 27 (69)
Q Consensus 3 ~~~~~~e~~~~f~~~~~r~lk~~~K 27 (69)
+++.+.+...+.-.++..|-+.++|
T Consensus 33 kLd~L~~ks~~L~~~s~~F~~~a~~ 57 (63)
T 1n7s_A 33 KLSELDDRADALQAGASQFETSAAK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666556666666666665544
No 45
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=27.27 E-value=1.9e+02 Score=22.03 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=14.4
Q ss_pred hcCCCHHHHHHHHHHHH
Q 035240 25 CHKPDRKEFTKVAFRTA 41 (69)
Q Consensus 25 ~~KPd~~Ef~~~~k~~~ 41 (69)
-..|+-|||...+.++.
T Consensus 381 g~vPt~eEYl~~~~vS~ 397 (543)
T 2ong_A 381 GHKPSLEEYLENSWQSI 397 (543)
T ss_dssp TCCCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHhcccccc
Confidence 35799999999998884
No 46
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=26.64 E-value=55 Score=17.80 Aligned_cols=25 Identities=8% Similarity=0.204 Sum_probs=14.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhcC
Q 035240 3 AIDNVFDPLRDFAKDSLRLVKRCHK 27 (69)
Q Consensus 3 ~~~~~~e~~~~f~~~~~r~lk~~~K 27 (69)
+++.+.+...+.-.++..|-+.+++
T Consensus 31 kLd~L~~ks~~L~~~s~~F~~~a~~ 55 (61)
T 3b5n_A 31 RLTSIEDKADNLAVSAQGFKRGANR 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555566666555544
No 47
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=25.93 E-value=42 Score=21.19 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=17.7
Q ss_pred ChhhhhhhhhHHHHHHHHHHH
Q 035240 1 MDAIDNVFDPLRDFAKDSLRL 21 (69)
Q Consensus 1 m~~~~~~~e~~~~f~~~~~r~ 21 (69)
||++++.-+.+++.+.++.++
T Consensus 2 Mdkl~~Yr~iI~~iL~~ya~~ 22 (112)
T 3d7q_A 2 MDKLNEYRTKVRQLLTKHLQY 22 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcC
Confidence 788888888889998888764
No 48
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=24.62 E-value=1.7e+02 Score=19.81 Aligned_cols=25 Identities=4% Similarity=-0.106 Sum_probs=16.0
Q ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHH
Q 035240 26 HKP-DRKEFTKVAFRTAIGFVVMGFV 50 (69)
Q Consensus 26 ~KP-d~~Ef~~~~k~~~lG~~i~G~I 50 (69)
..| +-+||......+.-.-.++...
T Consensus 161 ~~P~s~eEYl~~r~~s~g~~~~~~~~ 186 (337)
T 1ps1_A 161 APCDSAAQYLAMRRHTIGVQPTVDLA 186 (337)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCCHHHHHHHcccccchhhHHHHH
Confidence 469 9999999998877554444433
No 49
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=24.27 E-value=67 Score=19.27 Aligned_cols=20 Identities=10% Similarity=-0.022 Sum_probs=7.7
Q ss_pred hhhhhHHHHHHHHHHHHHHh
Q 035240 6 NVFDPLRDFAKDSLRLVKRC 25 (69)
Q Consensus 6 ~~~e~~~~f~~~~~r~lk~~ 25 (69)
.+-|.+..+++-..+-++.+
T Consensus 6 ~L~Eki~kYi~~l~eaL~~i 25 (86)
T 2oo2_A 6 ELRRETLKWLERIEERVKEI 25 (86)
T ss_dssp HHHHHHHHHHHHHHHHGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333
No 50
>3k6q_A Putative ligand binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Probab=24.03 E-value=38 Score=22.31 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=18.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH-hcCCCHHH
Q 035240 3 AIDNVFDPLRDFAKDSLRLVKR-CHKPDRKE 32 (69)
Q Consensus 3 ~~~~~~e~~~~f~~~~~r~lk~-~~KPd~~E 32 (69)
.++.+++.++++.+||..=+.. ..-|+|++
T Consensus 83 A~~~li~~l~eYAedY~n~~~~~~~apNRr~ 113 (139)
T 3k6q_A 83 VIQKLAEDLLEYAQDYMNDFKLFYNAPNRKT 113 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHSTTCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4667888888888877654221 12277754
No 51
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=23.80 E-value=2.5e+02 Score=21.48 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.4
Q ss_pred hcCCCHHHHHHHHHHHH
Q 035240 25 CHKPDRKEFTKVAFRTA 41 (69)
Q Consensus 25 ~~KPd~~Ef~~~~k~~~ 41 (69)
-..|+-|||+..+.++.
T Consensus 387 g~vPt~eEYl~~~~vS~ 403 (549)
T 1n1b_A 387 GYTPSLDEYLNIAKISV 403 (549)
T ss_dssp TCCCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHhcccch
Confidence 34799999999998874
No 52
>2v52_M MKL/myocardin-like protein 1; structural protein/contractIle protein, structural protein, contractIle protein, nucleotide-binding; HET: LAB ATP; 1.45A {Mus musculus}
Probab=23.78 E-value=53 Score=16.60 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=9.8
Q ss_pred HHhcCCCHHHHHH
Q 035240 23 KRCHKPDRKEFTK 35 (69)
Q Consensus 23 k~~~KPd~~Ef~~ 35 (69)
+....|||+|.-+
T Consensus 11 kl~~RPdR~eLV~ 23 (32)
T 2v52_M 11 KIRSRPERAELVR 23 (32)
T ss_dssp HHHTCCCHHHHHH
T ss_pred HHHcCCCHHHHHH
Confidence 4568999999743
No 53
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=23.40 E-value=62 Score=20.98 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=18.5
Q ss_pred ChhhhhhhhhHHHHHHHHHHHH
Q 035240 1 MDAIDNVFDPLRDFAKDSLRLV 22 (69)
Q Consensus 1 m~~~~~~~e~~~~f~~~~~r~l 22 (69)
||++++.-+.+++.++++.++-
T Consensus 2 MDkl~~Yr~iI~~iL~~ya~~~ 23 (126)
T 2nvm_A 2 MDKLTHYRHTIQEIIKKYYDLS 23 (126)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999999998853
No 54
>4fa8_E Macrophage colony-stimulating factor 1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3uf2_A 3uez_E 4adf_G* 1hmc_A 3ejj_A* 3uf5_A 4adq_E*
Probab=23.19 E-value=64 Score=21.48 Aligned_cols=25 Identities=4% Similarity=0.250 Sum_probs=18.8
Q ss_pred hhhhhHHHHHHHHHHHHHHh-cCCCH
Q 035240 6 NVFDPLRDFAKDSLRLVKRC-HKPDR 30 (69)
Q Consensus 6 ~~~e~~~~f~~~~~r~lk~~-~KPd~ 30 (69)
+++|.+++++++++++++.- ..+||
T Consensus 111 ~~Lekvk~v~~~~k~Ll~k~~~~~~~ 136 (147)
T 4fa8_E 111 QLLEKVKNVFNETKNLLDKDWNIFSK 136 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 47888999999999999543 33343
No 55
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=23.14 E-value=62 Score=15.71 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhh
Q 035240 46 VMGFVGFFVKLIFIP 60 (69)
Q Consensus 46 i~G~IGfiIklI~ip 60 (69)
+++.||=++|+|.-.
T Consensus 5 IisTIgdfvKlI~~T 19 (26)
T 1dtc_A 5 IISTIGDLVKWIIDT 19 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 678899999988643
No 56
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=22.59 E-value=80 Score=17.53 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHH--hcCCCHHHHHH
Q 035240 11 LRDFAKDSLRLVKR--CHKPDRKEFTK 35 (69)
Q Consensus 11 ~~~f~~~~~r~lk~--~~KPd~~Ef~~ 35 (69)
++.-++.|-+=+.. =+||++++-..
T Consensus 9 lk~~LK~WE~~F~~~~GRkP~k~DIk~ 35 (56)
T 2kmu_A 9 VRERLQAWERAFRRQRGRRPSQDDVEA 35 (56)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHc
Confidence 56667777665544 58999987543
No 57
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=22.57 E-value=85 Score=15.72 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHHHHHHH
Q 035240 27 KPDRKEFTKVAFRTAIG 43 (69)
Q Consensus 27 KPd~~Ef~~~~k~~~lG 43 (69)
+.+|.+|.|..-+++..
T Consensus 2 ~lsRR~FLK~~aaa~Aa 18 (35)
T 2pq4_B 2 KLSRRSFMKANAVAAAA 18 (35)
T ss_dssp CCCSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 56899999976655544
No 58
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=22.37 E-value=42 Score=21.19 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=17.1
Q ss_pred ChhhhhhhhhHHHHHHHHHH
Q 035240 1 MDAIDNVFDPLRDFAKDSLR 20 (69)
Q Consensus 1 m~~~~~~~e~~~~f~~~~~r 20 (69)
||++++.-+.+++.+.++.+
T Consensus 2 Mdkl~~Yr~iI~~iL~~ya~ 21 (112)
T 2nlv_A 2 MDKLVKYQELVKKLLTNYAS 21 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhc
Confidence 78888888888888888875
No 59
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=22.21 E-value=1.5e+02 Score=23.83 Aligned_cols=16 Identities=19% Similarity=0.139 Sum_probs=13.9
Q ss_pred cCCCHHHHHHHHHHHH
Q 035240 26 HKPDRKEFTKVAFRTA 41 (69)
Q Consensus 26 ~KPd~~Ef~~~~k~~~ 41 (69)
..|+-|||+..+.++.
T Consensus 593 yvPT~eEYl~na~vSs 608 (764)
T 3p5p_A 593 YIPTFEEYLKTYAISV 608 (764)
T ss_dssp CCCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHhcchhc
Confidence 4799999999999864
No 60
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=22.04 E-value=99 Score=16.88 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=18.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcC
Q 035240 2 DAIDNVFDPLRDFAKDSLRLVKRCHK 27 (69)
Q Consensus 2 ~~~~~~~e~~~~f~~~~~r~lk~~~K 27 (69)
|.++.-++...+.++...+=|+++.|
T Consensus 40 d~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 40 DSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45666677778888888888877765
No 61
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=21.62 E-value=1.8e+02 Score=19.15 Aligned_cols=25 Identities=0% Similarity=-0.037 Sum_probs=18.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Q 035240 26 HKPDRKEFTKVAFRTAIGFVVMGFV 50 (69)
Q Consensus 26 ~KPd~~Ef~~~~k~~~lG~~i~G~I 50 (69)
..|+-+||....+.+.-.-.++..+
T Consensus 150 ~~Ps~eeYl~~r~~s~g~~~~~~~~ 174 (300)
T 1di1_A 150 SIHELGHYLEYREKDVGKALLSALM 174 (300)
T ss_dssp CCCSHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHH
Confidence 5699999999988776555554444
No 62
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=21.43 E-value=1.6e+02 Score=23.91 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=14.0
Q ss_pred cCCCHHHHHHHHHHHH
Q 035240 26 HKPDRKEFTKVAFRTA 41 (69)
Q Consensus 26 ~KPd~~Ef~~~~k~~~ 41 (69)
..|+-|||+..+.++.
T Consensus 652 yvPt~eEYl~na~vS~ 667 (817)
T 3sdr_A 652 YVPTLDEYIKNGITSI 667 (817)
T ss_dssp CCCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHhccccc
Confidence 4899999999999864
No 63
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=21.21 E-value=1.7e+02 Score=23.63 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.7
Q ss_pred cCCCHHHHHHHHHHHH
Q 035240 26 HKPDRKEFTKVAFRTA 41 (69)
Q Consensus 26 ~KPd~~Ef~~~~k~~~ 41 (69)
..|+-|||+..+.++.
T Consensus 624 yvPT~eEYl~na~vS~ 639 (785)
T 3s9v_A 624 YVPSFNEYIENASVSI 639 (785)
T ss_dssp CCCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHhccccc
Confidence 3799999999998764
No 64
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=21.01 E-value=1.1e+02 Score=16.67 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=18.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Q 035240 20 RLVKRCHKPDRKEFTKVAFRTAI 42 (69)
Q Consensus 20 r~lk~~~KPd~~Ef~~~~k~~~l 42 (69)
+....+..|+.+|-..+|.-+++
T Consensus 34 ~~f~~~~yp~~~~r~~La~~l~l 56 (80)
T 2da3_A 34 QKYLLDSNPTRKMLDHIAHEVGL 56 (80)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHTS
T ss_pred HHHHhcCCCCHHHHHHHHHHHCc
Confidence 34567899999999888887654
No 65
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=20.75 E-value=1e+02 Score=15.88 Aligned_cols=23 Identities=17% Similarity=-0.003 Sum_probs=18.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Q 035240 20 RLVKRCHKPDRKEFTKVAFRTAI 42 (69)
Q Consensus 20 r~lk~~~KPd~~Ef~~~~k~~~l 42 (69)
+....+..||.+|=..+|.-+++
T Consensus 14 ~~F~~~~yp~~~~r~~LA~~l~l 36 (56)
T 3a03_A 14 RRFLRQKYLASAERAALAKALRM 36 (56)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHTC
T ss_pred HHHHhcCCcCHHHHHHHHHHhCc
Confidence 34467899999999888887764
No 66
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.04 E-value=85 Score=17.04 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=18.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Q 035240 20 RLVKRCHKPDRKEFTKVAFRTAI 42 (69)
Q Consensus 20 r~lk~~~KPd~~Ef~~~~k~~~l 42 (69)
+....+..||.+|-..+|+-+++
T Consensus 20 ~~F~~~~yp~~~~r~~LA~~l~L 42 (64)
T 2e19_A 20 AYYALNAQPSAEELSKIADSVNL 42 (64)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHTC
T ss_pred HHHhcCCCcCHHHHHHHHHHhCc
Confidence 34567999999999888887664
Done!