BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035243
         (69 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9VAZ3|OR98A_DROME Putative odorant receptor 98a OS=Drosophila melanogaster GN=Or98a
          PE=3 SV=2
          Length = 397

 Score = 29.6 bits (65), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 18 SPGLLIQVPGRNRFFEFGNFQTSGASILVHSILYFALMCIFLLAIGVHMYLG 69
          +P  L+  P   R+FE+G F     +   H I+Y+   C+      V++ +G
Sbjct: 10 NPTNLLTSPDSFRYFEYGMFCMGWHTPATHKIIYYITSCLIFAWCAVYLPIG 61


>sp|Q7VAP7|SYY_PROMA Tyrosine--tRNA ligase OS=Prochlorococcus marinus (strain SARG /
           CCMP1375 / SS120) GN=tyrS PE=3 SV=1
          Length = 416

 Score = 28.9 bits (63), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 2   SDWGPVFVGVVLFILLSPGLLIQVPGRNRFFEFGNFQTSGASILVHSILY 51
           S+W   F  V +  LLS   + Q+  +    EF N  TSG SI +H  LY
Sbjct: 146 SEWLEGFDMVQIIDLLSKSTVGQMLAKE---EFANRYTSGTSIALHEFLY 192


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.336    0.153    0.489 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,911,888
Number of Sequences: 539616
Number of extensions: 814913
Number of successful extensions: 3679
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3678
Number of HSP's gapped (non-prelim): 6
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)