Query 035243
Match_columns 69
No_of_seqs 105 out of 115
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 17:02:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kv5_A FST, putative uncharact 31.2 20 0.00068 19.2 1.2 10 5-14 10-19 (33)
2 3arc_L Photosystem II reaction 20.1 1E+02 0.0034 16.9 2.7 17 48-64 15-31 (37)
3 3lti_A DNA-directed RNA polyme 14.6 79 0.0027 23.4 1.9 8 17-24 4-11 (296)
4 1e6y_B Methyl-coenzyme M reduc 13.0 37 0.0013 26.9 -0.3 29 21-50 108-139 (433)
5 1hbn_B Methyl-coenzyme M reduc 12.1 41 0.0014 26.7 -0.3 29 21-50 111-142 (442)
6 1cse_I Eglin C; complex(serine 11.5 50 0.0017 19.1 -0.0 8 33-40 2-9 (70)
7 1xd7_A YWNA; structural genomi 11.2 1.4E+02 0.0049 18.3 2.1 18 36-53 2-19 (145)
8 4eai_A 5'-AMP-activated protei 11.1 1E+02 0.0036 19.4 1.4 41 22-62 63-104 (106)
9 1v54_D Cytochrome C oxidase su 11.0 91 0.0031 21.0 1.2 18 2-19 76-93 (147)
10 2y69_D Cytochrome C oxidase su 8.7 1.3E+02 0.0043 20.8 1.2 18 2-19 98-115 (169)
No 1
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=31.16 E-value=20 Score=19.24 Aligned_cols=10 Identities=60% Similarity=1.115 Sum_probs=8.4
Q ss_pred chHHHHHHHH
Q 035243 5 GPVFVGVVLF 14 (69)
Q Consensus 5 gPV~i~vvLF 14 (69)
||+++|++|=
T Consensus 10 aPivVGvvl~ 19 (33)
T 2kv5_A 10 APIFVGLVLE 19 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7999999874
No 2
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=20.08 E-value=1e+02 Score=16.86 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 035243 48 SILYFALMCIFLLAIGV 64 (69)
Q Consensus 48 a~ifF~l~~if~vai~v 64 (69)
|-+|.+++.||++|+-.
T Consensus 15 TSLy~GLLlifvlavlF 31 (37)
T 3arc_L 15 TSLYLGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 44788888888888643
No 3
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=14.62 E-value=79 Score=23.38 Aligned_cols=8 Identities=38% Similarity=1.036 Sum_probs=7.0
Q ss_pred hccceeEE
Q 035243 17 LSPGLLIQ 24 (69)
Q Consensus 17 LsPGLLfQ 24 (69)
+|||.-|+
T Consensus 4 ~SPGv~f~ 11 (296)
T 3lti_A 4 MSPGVFFD 11 (296)
T ss_dssp CCCEEEEE
T ss_pred CCCEEEEe
Confidence 69999997
No 4
>1e6y_B Methyl-coenzyme M reductase I beta subunit; biological methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP: a.89.1.1 d.58.31.2
Probab=12.95 E-value=37 Score=26.90 Aligned_cols=29 Identities=38% Similarity=0.579 Sum_probs=23.9
Q ss_pred eeEEecCCCce---eEeecccchHHHHHHHHHH
Q 035243 21 LLIQVPGRNRF---FEFGNFQTSGASILVHSIL 50 (69)
Q Consensus 21 LLfQ~PG~~r~---veFgn~~Tsg~si~VHa~i 50 (69)
+|.|+|-+ |. -||-.--|+..+.++|++|
T Consensus 108 llvqvPs~-R~~~aa~y~~~~~~~a~A~~~aIi 139 (433)
T 1e6y_B 108 LLIQSPKS-RIIAGADFMSATTVGAAAVTQTIM 139 (433)
T ss_dssp EEEECCHH-HHHTSSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HhhhhhhhhHHHHHHHHHHHHHHH
Confidence 78999944 54 6888888999999999987
No 5
>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} SCOP: a.89.1.1 d.58.31.2 PDB: 1hbm_B* 1hbo_B* 1hbu_B* 1mro_B* 3m1v_B* 3m2r_B* 3m2u_B* 3m2v_B* 3m30_B* 3m32_B* 3pot_B* 1e6v_B*
Probab=12.08 E-value=41 Score=26.72 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=23.8
Q ss_pred eeEEecCCCce---eEeecccchHHHHHHHHHH
Q 035243 21 LLIQVPGRNRF---FEFGNFQTSGASILVHSIL 50 (69)
Q Consensus 21 LLfQ~PG~~r~---veFgn~~Tsg~si~VHa~i 50 (69)
+|.|+|-+ |. -||----|+..+-++|++|
T Consensus 111 llvqvPs~-R~~~aa~y~~~~~~~a~A~~~aii 142 (442)
T 1hbn_B 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (442)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HhhhhcchhHHHHHHHHHHHHHHH
Confidence 78999954 54 6888888999999999987
No 6
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=11.51 E-value=50 Score=19.12 Aligned_cols=8 Identities=50% Similarity=0.621 Sum_probs=1.4
Q ss_pred Eeecccch
Q 035243 33 EFGNFQTS 40 (69)
Q Consensus 33 eFgn~~Ts 40 (69)
|||+.|||
T Consensus 2 ~~~~~k~s 9 (70)
T 1cse_I 2 EFGSELKS 9 (70)
T ss_dssp ------CB
T ss_pred CcCCCCCc
Confidence 78888876
No 7
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=11.20 E-value=1.4e+02 Score=18.25 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=11.6
Q ss_pred cccchHHHHHHHHHHHHH
Q 035243 36 NFQTSGASILVHSILYFA 53 (69)
Q Consensus 36 n~~Tsg~si~VHa~ifF~ 53 (69)
.|+|+....-+|+++|.+
T Consensus 2 ~M~s~~~~yAl~~L~~La 19 (145)
T 1xd7_A 2 SLINSRLAVAIHILSLIS 19 (145)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 467777888899988865
No 8
>4eai_A 5'-AMP-activated protein kinase catalytic subunit linker, 5'-AMP-activated protein...; AMPK, transferase; HET: AMP; 2.29A {Rattus norvegicus} PDB: 4eaj_A* 4eak_A* 4eal_A*
Probab=11.15 E-value=1e+02 Score=19.45 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=29.1
Q ss_pred eEEecCCCceeEeecccchHH-HHHHHHHHHHHHHHHHHHHH
Q 035243 22 LIQVPGRNRFFEFGNFQTSGA-SILVHSILYFALMCIFLLAI 62 (69)
Q Consensus 22 LfQ~PG~~r~veFgn~~Tsg~-si~VHa~ifF~l~~if~vai 62 (69)
|+|++-++--+||-++..+.. +--=|+.+||=+++-++..+
T Consensus 63 LYkv~~~~YLLDfq~i~g~~~~~~~~~~~~F~d~ca~li~~l 104 (106)
T 4eai_A 63 LYQVDSRTYLLDFRSIDDGGGGGGGSHTIEFFEMCANLIKIL 104 (106)
T ss_dssp EEECSSSCEEEEEEECCSSCCCSSSCHHHHHHHHHHHHHHHC
T ss_pred EEEecCCcEEEEEEeccCCCCCCCCcCcEeHHHHHHHHHHHH
Confidence 788987777999988887310 01136899999988877653
No 9
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=11.04 E-value=91 Score=20.97 Aligned_cols=18 Identities=22% Similarity=0.586 Sum_probs=12.1
Q ss_pred CCcchHHHHHHHHHHhcc
Q 035243 2 SDWGPVFVGVVLFILLSP 19 (69)
Q Consensus 2 ~DWgPV~i~vvLFvlLsP 19 (69)
.+|.+|+-++.+|+-+|=
T Consensus 76 gewK~v~g~v~~~i~~s~ 93 (147)
T 1v54_D 76 NEWKTVVGAAMFFIGFTA 93 (147)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 467777777776666553
No 10
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=8.66 E-value=1.3e+02 Score=20.78 Aligned_cols=18 Identities=22% Similarity=0.586 Sum_probs=12.1
Q ss_pred CCcchHHHHHHHHHHhcc
Q 035243 2 SDWGPVFVGVVLFILLSP 19 (69)
Q Consensus 2 ~DWgPV~i~vvLFvlLsP 19 (69)
.+|.+|+-++.+|+-+|=
T Consensus 98 gEWK~V~ggv~~~i~~s~ 115 (169)
T 2y69_D 98 NEWKTVVGAAMFFIGFTA 115 (169)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 467887777777666553
Done!