Query 035243
Match_columns 69
No_of_seqs 105 out of 115
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 17:02:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035243.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035243hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 35.4 17 0.0012 18.7 2.7 18 47-64 14-31 (37)
2 d1hbnb2 d.58.31.2 (B:2-188) Be 26.5 6.4 0.00046 26.5 -0.0 29 21-50 111-142 (187)
3 d1uf3a_ d.159.1.6 (A:) Hypothe 20.4 20 0.0014 20.2 1.3 15 22-38 214-228 (228)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 16.8 54 0.0039 15.8 2.4 15 48-62 7-21 (30)
5 d1tmka_ c.37.1.1 (A:) Thymidyl 13.3 65 0.0048 19.3 2.6 23 27-49 1-23 (214)
6 d1rqpa1 b.141.1.1 (A:193-298) 11.4 17 0.0012 20.9 -0.7 16 27-42 12-29 (106)
7 d1jb0m_ f.23.19.1 (M:) Subunit 10.9 27 0.0019 17.2 0.1 12 11-22 10-21 (31)
8 d1e6yb2 d.58.31.2 (B:2002-2185 10.6 17 0.0013 24.2 -0.9 29 21-50 108-139 (184)
9 d1e6vb2 d.58.31.2 (B:7-189) Be 10.3 24 0.0018 23.4 -0.3 30 21-50 107-138 (183)
10 d1r59o2 c.55.1.4 (O:257-491) G 9.2 52 0.0038 20.5 1.1 23 22-44 36-58 (235)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=35.39 E-value=17 Score=18.67 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 035243 47 HSILYFALMCIFLLAIGV 64 (69)
Q Consensus 47 Ha~ifF~l~~if~vai~v 64 (69)
+|-+|.+++.||++++-.
T Consensus 14 rtsLy~GlLlifvl~vLF 31 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 466889999898888644
No 2
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.46 E-value=6.4 Score=26.47 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=24.3
Q ss_pred eeEEecCCCc---eeEeecccchHHHHHHHHHH
Q 035243 21 LLIQVPGRNR---FFEFGNFQTSGASILVHSIL 50 (69)
Q Consensus 21 LLfQ~PG~~r---~veFgn~~Tsg~si~VHa~i 50 (69)
+|.|+|-+ | --||..--|+..+.++||+|
T Consensus 111 llvqvPs~-Ri~~aa~Y~v~~t~~~~A~~~aIi 142 (187)
T d1hbnb2 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (187)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HHhhhhhhhHHHHHHHHHHHHHHH
Confidence 78999954 5 56888888999999999987
No 3
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=20.37 E-value=20 Score=20.19 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=10.5
Q ss_pred eEEecCCCceeEeeccc
Q 035243 22 LIQVPGRNRFFEFGNFQ 38 (69)
Q Consensus 22 LfQ~PG~~r~veFgn~~ 38 (69)
+.++.++. +||||.+
T Consensus 214 ~i~~~~~~--ie~~~~~ 228 (228)
T d1uf3a_ 214 LLDLRARK--LETGNVR 228 (228)
T ss_dssp EEETTTTE--EEEEECC
T ss_pred EEEccCCE--EEEEeeC
Confidence 55666654 9999864
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.78 E-value=54 Score=15.84 Aligned_cols=15 Identities=20% Similarity=0.713 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHH
Q 035243 48 SILYFALMCIFLLAI 62 (69)
Q Consensus 48 a~ifF~l~~if~vai 62 (69)
.+||-+++.+|..|+
T Consensus 7 v~ifac~i~lfffai 21 (30)
T d2axtt1 7 VFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777777775
No 5
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.34 E-value=65 Score=19.26 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=18.8
Q ss_pred CCCceeEeecccchHHHHHHHHH
Q 035243 27 GRNRFFEFGNFQTSGASILVHSI 49 (69)
Q Consensus 27 G~~r~veFgn~~Tsg~si~VHa~ 49 (69)
||++.+-|=...-||+|-.++.+
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L 23 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNIL 23 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEECCCCCcHHHHHHHH
Confidence 78888888888888888887754
No 6
>d1rqpa1 b.141.1.1 (A:193-298) 5'-fluoro-5'-deoxyadenosine synthase {Streptomyces cattleya [TaxId: 29303]}
Probab=11.41 E-value=17 Score=20.89 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=11.0
Q ss_pred CCCceeE--eecccchHH
Q 035243 27 GRNRFFE--FGNFQTSGA 42 (69)
Q Consensus 27 G~~r~ve--Fgn~~Tsg~ 42 (69)
|.-..+| |||..||..
T Consensus 12 G~V~~iDh~FGN~iTNI~ 29 (106)
T d1rqpa1 12 GVVSAIDHPFGNVWTNIH 29 (106)
T ss_dssp EEEEEEETTTTEEEEEEE
T ss_pred EEEEEEecCCCcEEEecC
Confidence 3334677 999999853
No 7
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=10.91 E-value=27 Score=17.24 Aligned_cols=12 Identities=50% Similarity=0.728 Sum_probs=8.0
Q ss_pred HHHHHHhcccee
Q 035243 11 VVLFILLSPGLL 22 (69)
Q Consensus 11 vvLFvlLsPGLL 22 (69)
++|-+.|.||.|
T Consensus 10 valvial~pg~l 21 (31)
T d1jb0m_ 10 VALVIALLPAVL 21 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455677788865
No 8
>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=10.63 E-value=17 Score=24.15 Aligned_cols=29 Identities=38% Similarity=0.579 Sum_probs=23.5
Q ss_pred eeEEecCCCce---eEeecccchHHHHHHHHHH
Q 035243 21 LLIQVPGRNRF---FEFGNFQTSGASILVHSIL 50 (69)
Q Consensus 21 LLfQ~PG~~r~---veFgn~~Tsg~si~VHa~i 50 (69)
+|.|+|-+ |. -||..--|+..+.++||+|
T Consensus 108 llvqvPs~-Ri~~aa~Y~~~~t~~~~A~~~aIi 139 (184)
T d1e6yb2 108 LLIQSPKS-RIIAGADFMSATTVGAAAVTQTIM 139 (184)
T ss_dssp EEEECCHH-HHHTSSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HHhhhcchhHHHHHHHHHHHHHHH
Confidence 78999954 42 5788888999999999987
No 9
>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=10.30 E-value=24 Score=23.37 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=23.7
Q ss_pred eeEEecCCCc--eeEeecccchHHHHHHHHHH
Q 035243 21 LLIQVPGRNR--FFEFGNFQTSGASILVHSIL 50 (69)
Q Consensus 21 LLfQ~PG~~r--~veFgn~~Tsg~si~VHa~i 50 (69)
+|.|+|-+.- --||----|+..+.++||+|
T Consensus 107 llvqvPs~Ri~~aa~y~v~~~~~~~A~~~aIi 138 (183)
T d1e6vb2 107 LLVQLPSERVKVMADPYSGTLQAGMAVVHAII 138 (183)
T ss_dssp EEEECCHHHHTTCSSSSTHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 7899995431 35788888999999999986
No 10
>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}
Probab=9.19 E-value=52 Score=20.54 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=18.9
Q ss_pred eEEecCCCceeEeecccchHHHH
Q 035243 22 LIQVPGRNRFFEFGNFQTSGASI 44 (69)
Q Consensus 22 LfQ~PG~~r~veFgn~~Tsg~si 44 (69)
-+++||+....-.|.+.++|.++
T Consensus 36 ~~~~~~~~~y~~eg~~~~~G~~~ 58 (235)
T d1r59o2 36 GYGINGKVYYALEGSIFVAGSAI 58 (235)
T ss_dssp CCCSSSCCCEEEECCCSCSSHHH
T ss_pred EEEeCCccEEEeHHHHHHHHHHH
Confidence 47888888788889999998765
Done!