BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035245
         (69 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LDK3|NDUB2_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
          OS=Arabidopsis thaliana GN=At1g76200 PE=3 SV=1
          Length = 69

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 10 VKYNGMALHRPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPW 57
          + Y G+ +H PK WHTVTGKGLCAVMWFW+LYRAKQDGPVV+GWRHPW
Sbjct: 10 ITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPW 57


>sp|Q9CPU2|NDUB2_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2,
          mitochondrial OS=Mus musculus GN=Ndufb2 PE=3 SV=1
          Length = 105

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 21 KRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLG 52
           R   + G+ L ++MWFW+L+R   D   VLG
Sbjct: 51 TRSQVIQGEFLSSLMWFWILWRFWHDSDAVLG 82


>sp|Q02374|NDUB2_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2,
          mitochondrial OS=Bos taurus GN=NDUFB2 PE=1 SV=1
          Length = 108

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 2  GGGDHGESVKYNGMALHRPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLG 52
          GGG H E        L R +    +  +   A MWFW+L+R   D   VLG
Sbjct: 38 GGGAHIEPRYRQFPQLTRSQ---VIQAEFFSATMWFWILWRFWHDSDAVLG 85


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.143    0.548 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,430,483
Number of Sequences: 539616
Number of extensions: 1275003
Number of successful extensions: 2622
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2610
Number of HSP's gapped (non-prelim): 30
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)