Query 035245
Match_columns 69
No_of_seqs 101 out of 104
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 10:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14813 NADH_B2: NADH dehydro 99.8 3.4E-20 7.4E-25 116.1 -0.3 56 6-63 3-58 (71)
2 KOG0873 C-4 sterol methyl oxid 70.6 2.2 4.8E-05 32.8 1.1 28 33-60 193-220 (283)
3 PRK13712 conjugal transfer pro 54.7 4.9 0.00011 27.3 0.4 14 26-39 96-109 (115)
4 PF13268 DUF4059: Protein of u 42.9 12 0.00025 23.8 0.7 17 32-48 21-37 (72)
5 PF10173 Mit_KHE1: Mitochondri 36.9 5.2 0.00011 28.3 -1.7 19 36-54 162-180 (187)
6 KOG4539 Uncharacterized conser 34.1 8.2 0.00018 29.7 -1.1 18 35-52 174-191 (274)
7 PTZ00473 Plasmodium Vir superf 32.9 15 0.00033 29.8 0.1 26 18-43 261-289 (420)
8 PTZ00229 variable surface prot 22.1 28 0.0006 27.1 -0.2 21 24-44 246-266 (317)
9 COG2994 HlyC ACP:hemolysin acy 22.0 23 0.0005 25.2 -0.5 20 27-46 16-35 (148)
10 PRK10019 nickel/cobalt efflux 21.8 61 0.0013 24.6 1.6 11 37-47 103-113 (279)
11 KOG2568 Predicted membrane pro 21.7 23 0.0005 29.4 -0.7 22 27-48 211-232 (518)
No 1
>PF14813 NADH_B2: NADH dehydrogenase 1 beta subcomplex subunit 2
Probab=99.77 E-value=3.4e-20 Score=116.12 Aligned_cols=56 Identities=23% Similarity=0.502 Sum_probs=47.7
Q ss_pred CCCCcccCccccCCCCceeeeeeeeccchhhhhhhhhhhccCCceeeecCcCCCCCCC
Q 035245 6 HGESVKYNGMALHRPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHDDH 63 (69)
Q Consensus 6 hG~gvty~g~~~p~p~~~~~~~a~~Lga~MWFWIlyR~k~Dg~~vlG~~~Pw~~h~~h 63 (69)
.+|.+.|. -++|+++|.++++|++|||+||||||||+|+|.+.||| +|||++-..-
T Consensus 3 ~~h~~~~y-r~~p~~~k~~~~~a~~l~g~mW~WIlwh~whd~~hvlG-hfpyPdps~w 58 (71)
T PF14813_consen 3 GGHIEPYY-RQFPELTKKQVIMAELLSGFMWFWILWHFWHDPDHVLG-HFPYPDPSEW 58 (71)
T ss_pred CCCcceee-cCCCCcCHHHHHHHHHHHHHHHHHHHHHHhcChhhhcC-CCCCCChhhc
Confidence 34455443 37888999999999999999999999999999999999 9999985443
No 2
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=70.58 E-value=2.2 Score=32.79 Aligned_cols=28 Identities=21% Similarity=0.662 Sum_probs=25.8
Q ss_pred chhhhhhhhhhhccCCceeeecCcCCCC
Q 035245 33 AVMWFWVLYRAKQDGPVVLGWRHPWEGH 60 (69)
Q Consensus 33 a~MWFWIlyR~k~Dg~~vlG~~~Pw~~h 60 (69)
.++|.||..|..+-.++--|+.|||..+
T Consensus 193 ~t~wiw~~l~i~~t~~~HsGY~fPwsl~ 220 (283)
T KOG0873|consen 193 ITLWIWIALRILETVESHSGYDFPWSLS 220 (283)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCcccc
Confidence 5789999999999999999999999765
No 3
>PRK13712 conjugal transfer protein TrbA; Provisional
Probab=54.69 E-value=4.9 Score=27.28 Aligned_cols=14 Identities=29% Similarity=0.786 Sum_probs=11.7
Q ss_pred eeeeeccchhhhhh
Q 035245 26 VTGKGLCAVMWFWV 39 (69)
Q Consensus 26 ~~a~~Lga~MWFWI 39 (69)
.++.+-++.|||+|
T Consensus 96 mlss~wsgvmwffi 109 (115)
T PRK13712 96 MLSSVWSGVMWFFI 109 (115)
T ss_pred eehhhhhhhHHHHh
Confidence 46777889999998
No 4
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=42.94 E-value=12 Score=23.81 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=12.6
Q ss_pred cchhhhhhhhhhhccCC
Q 035245 32 CAVMWFWVLYRAKQDGP 48 (69)
Q Consensus 32 ga~MWFWIlyR~k~Dg~ 48 (69)
+-.+=|||+||+.+--|
T Consensus 21 ~~~~~~wi~~Ra~~~~D 37 (72)
T PF13268_consen 21 LLVSGIWILWRALRKKD 37 (72)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 45567999999976544
No 5
>PF10173 Mit_KHE1: Mitochondrial K+-H+ exchange-related; InterPro: IPR018786 This entry represents a family of proteins conserved from plants to humans. Their function is not known.
Probab=36.88 E-value=5.2 Score=28.34 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=16.3
Q ss_pred hhhhhhhhhccCCceeeec
Q 035245 36 WFWVLYRAKQDGPVVLGWR 54 (69)
Q Consensus 36 WFWIlyR~k~Dg~~vlG~~ 54 (69)
-||+.||+|-...|+.|-+
T Consensus 162 ~FYl~yRaysh~rAl~G~k 180 (187)
T PF10173_consen 162 FFYLAYRAYSHWRALQGSK 180 (187)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6999999999998888754
No 6
>KOG4539 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.13 E-value=8.2 Score=29.66 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=16.0
Q ss_pred hhhhhhhhhhccCCceee
Q 035245 35 MWFWVLYRAKQDGPVVLG 52 (69)
Q Consensus 35 MWFWIlyR~k~Dg~~vlG 52 (69)
=-||++||++-.+.+++|
T Consensus 174 PgFyl~yRaY~n~rA~qG 191 (274)
T KOG4539|consen 174 PGFYLLYRAYSNWRALQG 191 (274)
T ss_pred CcceehhhhhhhHHHHhh
Confidence 359999999999999888
No 7
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=32.90 E-value=15 Score=29.85 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=17.7
Q ss_pred CCCCceeeeee---eeccchhhhhhhhhh
Q 035245 18 HRPKRWHTVTG---KGLCAVMWFWVLYRA 43 (69)
Q Consensus 18 p~p~~~~~~~a---~~Lga~MWFWIlyR~ 43 (69)
|.+++..+++- .+||++|-|+|||.+
T Consensus 261 ~~ls~f~~~~~~~Fs~lg~~l~fF~lYKf 289 (420)
T PTZ00473 261 PDLSSFGKVLVISFSALGGSLSLFILYKF 289 (420)
T ss_pred CccCccceeehhhHHHHHHHHHHHHHHhc
Confidence 34444444443 467899999999975
No 8
>PTZ00229 variable surface protein Vir30; Provisional
Probab=22.13 E-value=28 Score=27.08 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=17.9
Q ss_pred eeeeeeeccchhhhhhhhhhh
Q 035245 24 HTVTGKGLCAVMWFWVLYRAK 44 (69)
Q Consensus 24 ~~~~a~~Lga~MWFWIlyR~k 44 (69)
-.++++++|.++-|.+||++-
T Consensus 246 ~~~~gs~~gl~~~f~~~YKFT 266 (317)
T PTZ00229 246 TAVTGTIVGLIPLVGILYKFT 266 (317)
T ss_pred ehhhhhhhhHHhHHhhhhccc
Confidence 456788999999999999974
No 9
>COG2994 HlyC ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.03 E-value=23 Score=25.16 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=14.4
Q ss_pred eeeeccchhhhhhhhhhhcc
Q 035245 27 TGKGLCAVMWFWVLYRAKQD 46 (69)
Q Consensus 27 ~a~~Lga~MWFWIlyR~k~D 46 (69)
..|+||++||.|.=--..++
T Consensus 16 ~~ealG~vv~L~~~S~~~r~ 35 (148)
T COG2994 16 EFEALGAVVWLWMHSPDHRH 35 (148)
T ss_pred HHHHHHHHHHHHhcCccchh
Confidence 57899999999975333333
No 10
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=21.77 E-value=61 Score=24.58 Aligned_cols=11 Identities=27% Similarity=0.954 Sum_probs=8.4
Q ss_pred hhhhhhhhccC
Q 035245 37 FWVLYRAKQDG 47 (69)
Q Consensus 37 FWIlyR~k~Dg 47 (69)
.|++||+++..
T Consensus 103 l~ll~r~~r~~ 113 (279)
T PRK10019 103 FWMFWRTWRGE 113 (279)
T ss_pred HHHHHHHHHHH
Confidence 58888888764
No 11
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=21.66 E-value=23 Score=29.39 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=18.4
Q ss_pred eeeeccchhhhhhhhhhhccCC
Q 035245 27 TGKGLCAVMWFWVLYRAKQDGP 48 (69)
Q Consensus 27 ~a~~Lga~MWFWIlyR~k~Dg~ 48 (69)
+|-++-+..|||..+|.|||.-
T Consensus 211 laYvllgllW~~~~~~y~~diL 232 (518)
T KOG2568|consen 211 LAYVLLGLLWFFQCAQYWHDIL 232 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999963
Done!