Query 035245
Match_columns 69
No_of_seqs 101 out of 104
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 17:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nr1_A NR1 M2, M2; receptor, s 40.6 6 0.00021 20.2 0.0 7 31-37 9-15 (27)
2 3n44_F E1 envelope glycoprotei 19.3 26 0.0009 27.7 0.3 36 24-59 417-452 (473)
3 1h9i_I EETI-II, trypsin inhibi 18.8 18 0.00063 19.4 -0.5 14 39-52 5-18 (36)
4 2kkv_A Integrase; protein stru 16.3 63 0.0021 18.1 1.4 10 54-63 111-120 (121)
5 2k2b_A Degenerin MEC-4; membra 14.2 82 0.0028 20.3 1.6 23 40-63 88-110 (111)
6 1rq8_A Conserved hypothetical 13.9 39 0.0013 21.2 0.0 23 38-63 81-103 (104)
7 1uhw_A Pleckstrin; three-helix 12.4 44 0.0015 21.1 -0.0 11 39-49 97-107 (109)
8 3l42_A Peregrin; transcription 12.1 66 0.0023 21.0 0.8 33 9-41 35-82 (130)
9 2yvc_D Neprilysin; protein-pep 11.3 65 0.0022 16.1 0.4 13 15-27 12-24 (26)
10 1h9h_I EETI-II, trypsin inhibi 9.4 50 0.0017 17.7 -0.5 14 39-52 5-18 (36)
No 1
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=40.61 E-value=6 Score=20.23 Aligned_cols=7 Identities=57% Similarity=1.464 Sum_probs=6.1
Q ss_pred ccchhhh
Q 035245 31 LCAVMWF 37 (69)
Q Consensus 31 Lga~MWF 37 (69)
|+++|||
T Consensus 9 l~aa~wF 15 (27)
T 2nr1_A 9 LSSAMWF 15 (27)
T ss_dssp HHHHHHH
T ss_pred hhhhHHH
Confidence 6889998
No 2
>3n44_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG; 2.35A {Chikungunya virus} PDB: 3n41_F* 3n42_F* 3n43_F* 2xfc_A
Probab=19.27 E-value=26 Score=27.72 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=0.0
Q ss_pred eeeeeeeccchhhhhhhhhhhccCCceeeecCcCCC
Q 035245 24 HTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEG 59 (69)
Q Consensus 24 ~~~~a~~Lga~MWFWIlyR~k~Dg~~vlG~~~Pw~~ 59 (69)
-...-..++++-|=|+.---++|-|.--||.||=..
T Consensus 417 ~~~~~~avS~Taw~Wl~~~~~~~~~~~~~~~~~~~~ 452 (473)
T 3n44_F 417 TTLGVQDISATAMSWVQKGPFEDDDDKAGWSHPQFE 452 (473)
T ss_dssp ------------------------------------
T ss_pred ccccccccchhhhhHhhcCCCcCccccccccCcccc
Confidence 334445678999999999999999999999999443
No 3
>1h9i_I EETI-II, trypsin inhibitor II; hydrolase/inhibitor, complex (serine protease/inhibitor), squash inhibitor, cystine knot; 1.9A {Ecballium elaterium} SCOP: g.3.2.1
Probab=18.82 E-value=18 Score=19.43 Aligned_cols=14 Identities=43% Similarity=0.693 Sum_probs=12.1
Q ss_pred hhhhhhccCCceee
Q 035245 39 VLYRAKQDGPVVLG 52 (69)
Q Consensus 39 IlyR~k~Dg~~vlG 52 (69)
||-+.|+|+|-++|
T Consensus 5 ILM~Ck~DsDCL~~ 18 (36)
T 1h9i_I 5 ILIRCKQDSDCLAG 18 (36)
T ss_dssp CCCBCSSGGGSCTT
T ss_pred eEeecccCcccccC
Confidence 67789999999887
No 4
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=16.29 E-value=63 Score=18.13 Aligned_cols=10 Identities=40% Similarity=0.677 Sum_probs=6.6
Q ss_pred cCcCCCCCCC
Q 035245 54 RHPWEGHDDH 63 (69)
Q Consensus 54 ~~Pw~~h~~h 63 (69)
++|.|+|.+|
T Consensus 111 ~~~~~~~~~~ 120 (121)
T 2kkv_A 111 HYPLEHHHHH 120 (121)
T ss_dssp SSCCTTCCCC
T ss_pred CCchhhcccc
Confidence 6777776554
No 5
>2k2b_A Degenerin MEC-4; membrane associated, minimal constraint, detergent solubilized, glycoprotein, ION transport, ionic channel; NMR {Caenorhabditis elegans}
Probab=14.18 E-value=82 Score=20.25 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=18.3
Q ss_pred hhhhhccCCceeeecCcCCCCCCC
Q 035245 40 LYRAKQDGPVVLGWRHPWEGHDDH 63 (69)
Q Consensus 40 lyR~k~Dg~~vlG~~~Pw~~h~~h 63 (69)
+|++--.+--++| +-|-+||.+|
T Consensus 88 ~~K~Sahgipmig-eaplehhhhh 110 (111)
T 2k2b_A 88 CYKTSAHGIPMIG-EAPLEHHHHH 110 (111)
T ss_dssp TSCSSCSSCCSSS-CCCCCCCCCC
T ss_pred HHhccccCCcccC-cCcchhcccC
Confidence 4666677788999 9999987665
No 6
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=13.91 E-value=39 Score=21.21 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=9.8
Q ss_pred hhhhhhhccCCceeeecCcCCCCCCC
Q 035245 38 WVLYRAKQDGPVVLGWRHPWEGHDDH 63 (69)
Q Consensus 38 WIlyR~k~Dg~~vlG~~~Pw~~h~~h 63 (69)
.||||-..+-+.. ..|-++|.+|
T Consensus 81 ~VLYR~~~~~~~i---~~~~~~~~~~ 103 (104)
T 1rq8_A 81 IVIYRESKENKEI---ELPLEHHHHH 103 (104)
T ss_dssp EEEEECCCSCCSC---CCC-------
T ss_pred EEEEeCCCCCCce---eccccccccC
Confidence 3889987644332 4688876654
No 7
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=12.39 E-value=44 Score=21.06 Aligned_cols=11 Identities=27% Similarity=0.600 Sum_probs=8.4
Q ss_pred hhhhhhccCCc
Q 035245 39 VLYRAKQDGPV 49 (69)
Q Consensus 39 IlyR~k~Dg~~ 49 (69)
.||||..|+|.
T Consensus 97 ~lYrF~~~~~~ 107 (109)
T 1uhw_A 97 AFYYFPDSGPS 107 (109)
T ss_dssp CCEECTTSSSC
T ss_pred cEEEEcCCCCC
Confidence 47888888874
No 8
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=12.13 E-value=66 Score=21.04 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=23.3
Q ss_pred CcccCccccCCCCc--------------eeeeeeeeccc-hhhhhhhh
Q 035245 9 SVKYNGMALHRPKR--------------WHTVTGKGLCA-VMWFWVLY 41 (69)
Q Consensus 9 gvty~g~~~p~p~~--------------~~~~~a~~Lga-~MWFWIly 41 (69)
|+.|+|+++|.|+. -..++-+.++. -.|-||--
T Consensus 35 g~~~~g~~ip~pP~~Vl~~~~~~~~~~~~~~y~V~FFd~~~t~aWv~~ 82 (130)
T 3l42_A 35 GMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPR 82 (130)
T ss_dssp CEEETTEEECCCCHHHHHHHHHHHHHCSSCEEEEEESSTTCCEEEEEG
T ss_pred cccccCccCCCChHHHHhhcccccccCCCcEEEEEeCCCCCceEeecc
Confidence 66789999998875 34566667774 57777653
No 9
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=11.29 E-value=65 Score=16.05 Aligned_cols=13 Identities=15% Similarity=0.264 Sum_probs=9.8
Q ss_pred cccCCCCceeeee
Q 035245 15 MALHRPKRWHTVT 27 (69)
Q Consensus 15 ~~~p~p~~~~~~~ 27 (69)
+..|.|++.+++-
T Consensus 12 inapkpkkk~rws 24 (26)
T 2yvc_D 12 INAPKPKKKQRXX 24 (26)
T ss_pred ccCCCcchhhccc
Confidence 5678898888763
No 10
>1h9h_I EETI-II, trypsin inhibitor II; hydrolase inhibitor, complex (serine protease/inhibitor), squash inhibitor, cystine knot, hydrolase; 1.5A {Ecballium elaterium} SCOP: g.3.2.1 PDB: 1mcv_I
Probab=9.44 E-value=50 Score=17.71 Aligned_cols=14 Identities=43% Similarity=0.693 Sum_probs=11.1
Q ss_pred hhhhhhccCCceee
Q 035245 39 VLYRAKQDGPVVLG 52 (69)
Q Consensus 39 IlyR~k~Dg~~vlG 52 (69)
||-+.|+|+|-+.+
T Consensus 5 ILm~CK~DsDCl~~ 18 (36)
T 1h9h_I 5 ILIRCKQDSDCLAG 18 (36)
T ss_dssp CCCBCSSGGGSCTT
T ss_pred hhcccccccCcccc
Confidence 67788999988764
Done!