BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035248
MSETEVPFRPREKLLEKQKHFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN
MSHGIGKKE

High Scoring Gene Products

Symbol, full name Information P value
AT4G21105 protein from Arabidopsis thaliana 2.5e-26

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035248
        (69 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006502 - symbol:AT4G21105 species:3702 "Ara...   297  2.5e-26   1


>TAIR|locus:505006502 [details] [associations]
            symbol:AT4G21105 species:3702 "Arabidopsis thaliana"
            [GO:0004129 "cytochrome-c oxidase activity" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0009055 "electron
            carrier activity" evidence=IEA] [GO:0005774 "vacuolar membrane"
            evidence=IDA] [GO:0006623 "protein targeting to vacuole"
            evidence=RCA] InterPro:IPR003177 Pfam:PF02238 GO:GO:0005739
            GO:GO:0005774 EMBL:CP002687 GO:GO:0009055 GO:GO:0004129
            GO:GO:0005746 UniGene:At.27004 EMBL:AF424552 EMBL:AF419597
            EMBL:AF446891 EMBL:AK118629 IPI:IPI00537970 RefSeq:NP_567619.1
            STRING:Q944S8 PRIDE:Q944S8 EnsemblPlants:AT4G21105.1 GeneID:827858
            KEGG:ath:AT4G21105 TAIR:At4g21105 InParanoid:Q944S8 OMA:MDKITSV
            PhylomeDB:Q944S8 ProtClustDB:CLSN2689531 Genevestigator:Q944S8
            Uniprot:Q944S8
        Length = 68

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 58/66 (87%), Positives = 62/66 (93%)

Query:     4 TEVPFRPREKLLEKQKHFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMSH 63
             TE PFRPREKLLEKQ+ FQSI +HTYLKGPMDKITSVAIPIALAASSLY+IG GIYNMS+
Sbjct:     3 TETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSVAIPIALAASSLYMIGTGIYNMSN 62

Query:    64 GIGKKE 69
             GIGKKE
Sbjct:    63 GIGKKE 68


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        69   0.00091  102 3  11 22  0.46    28
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  426 (45 KB)
  Total size of DFA:  76 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.31u 0.14s 8.45t   Elapsed:  00:00:00
  Total cpu time:  8.31u 0.14s 8.45t   Elapsed:  00:00:00
  Start:  Fri May 10 06:49:05 2013   End:  Fri May 10 06:49:05 2013

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