BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035248
         (69 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|G2TRP5|COX7_SCHPO Cytochrome c oxidase subunit 7 OS=Schizosaccharomyces pombe
          (strain 972 / ATCC 24843) GN=cox7 PE=3 SV=1
          Length = 59

 Score = 29.6 bits (65), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 9/62 (14%)

Query: 11 REKLLEKQKHFQSIHKHTYLKGPMDKITS---VAIPIALAASSLYLIGRGIYNMSHGIGK 67
          +  ++++Q+  QSIHK TYL+ P          A+   L   SLY  GR I+      GK
Sbjct: 2  KNTIVQQQRFLQSIHKPTYLQRPGSFALVYPYYAVMAGLGLYSLYASGRVIF------GK 55

Query: 68 KE 69
          K+
Sbjct: 56 KD 57


>sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus musculus GN=Ubr5 PE=1 SV=2
          Length = 2792

 Score = 28.9 bits (63), Expect = 9.4,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 6   VPFRPREKLLEKQKHFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMSHGI 65
           VPF  R+K+LEK +      K +     M  IT V   + L  + LY  G   +++S GI
Sbjct: 491 VPFSQRKKMLEKARAKNKKPKSSAGISSMPNIT-VGTQVCLRNNPLYHAGAVAFSISAGI 549

Query: 66  GK 67
            K
Sbjct: 550 PK 551


>sp|O95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2
          Length = 2799

 Score = 28.9 bits (63), Expect = 9.6,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 6   VPFRPREKLLEKQKHFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMSHGI 65
           VPF  R+K+LEK +      K +     M  IT V   + L  + LY  G   +++S GI
Sbjct: 497 VPFSQRKKMLEKARAKNKKPKSSAGISSMPNIT-VGTQVCLRNNPLYHAGAVAFSISAGI 555

Query: 66  GK 67
            K
Sbjct: 556 PK 557


>sp|B0V9X4|NUSB_ACIBY N utilization substance protein B homolog OS=Acinetobacter
           baumannii (strain AYE) GN=nusB PE=3 SV=1
          Length = 149

 Score = 28.9 bits (63), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 5   EVPFRP-REKLLEKQKHFQSIHKHTYLKGPMDKITS 39
           E+P+R   ++ +E  KHF     H Y+ G +D+++S
Sbjct: 103 EIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLSS 138


>sp|A3MA35|NUSB_ACIBT N utilization substance protein B homolog OS=Acinetobacter
           baumannii (strain ATCC 17978 / NCDC KC 755) GN=nusB PE=3
           SV=2
          Length = 149

 Score = 28.9 bits (63), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 5   EVPFRP-REKLLEKQKHFQSIHKHTYLKGPMDKITS 39
           E+P+R   ++ +E  KHF     H Y+ G +D+++S
Sbjct: 103 EIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLSS 138


>sp|B2I2B2|NUSB_ACIBC N utilization substance protein B homolog OS=Acinetobacter
           baumannii (strain ACICU) GN=nusB PE=3 SV=1
          Length = 149

 Score = 28.9 bits (63), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 5   EVPFRP-REKLLEKQKHFQSIHKHTYLKGPMDKITS 39
           E+P+R   ++ +E  KHF     H Y+ G +D+++S
Sbjct: 103 EIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLSS 138


>sp|B7I252|NUSB_ACIB5 N utilization substance protein B homolog OS=Acinetobacter
           baumannii (strain AB0057) GN=nusB PE=3 SV=1
          Length = 149

 Score = 28.9 bits (63), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 5   EVPFRP-REKLLEKQKHFQSIHKHTYLKGPMDKITS 39
           E+P+R   ++ +E  KHF     H Y+ G +D+++S
Sbjct: 103 EIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLSS 138


>sp|B7GUW2|NUSB_ACIB3 N utilization substance protein B homolog OS=Acinetobacter
           baumannii (strain AB307-0294) GN=nusB PE=3 SV=1
          Length = 149

 Score = 28.9 bits (63), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 5   EVPFRP-REKLLEKQKHFQSIHKHTYLKGPMDKITS 39
           E+P+R   ++ +E  KHF     H Y+ G +D+++S
Sbjct: 103 EIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLSS 138


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.135    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,563,037
Number of Sequences: 539616
Number of extensions: 712228
Number of successful extensions: 1692
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1692
Number of HSP's gapped (non-prelim): 10
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)