Query 035248
Match_columns 69
No_of_seqs 31 out of 33
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 17:05:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_J Cytochrome C oxidase po 97.7 1.2E-05 4.2E-10 48.0 1.6 47 12-62 3-51 (59)
2 2y69_J Cytochrome C oxidase po 97.5 3.5E-05 1.2E-09 48.7 1.6 47 12-62 24-72 (80)
3 2d1p_B TUSC, hypothetical UPF0 76.8 1.1 3.7E-05 27.3 1.6 36 30-65 9-51 (119)
4 1ais_B TFB TFIIB, protein (tra 76.7 4.5 0.00015 25.8 4.5 39 10-56 26-64 (200)
5 3hl2_A O-phosphoseryl-tRNA(SEC 70.1 1.4 4.9E-05 34.9 1.1 17 52-68 82-98 (501)
6 1c9b_A General transcription f 68.8 8.3 0.00028 24.7 4.4 39 10-56 22-60 (207)
7 3se4_B Interferon omega-1; typ 66.5 1.8 6.2E-05 29.5 0.9 27 5-33 113-139 (177)
8 3s9d_A Interferon alpha-2; hum 66.3 1.8 6.3E-05 29.3 0.9 27 5-33 110-136 (168)
9 3piv_A Interferon; zebrafish, 61.1 4.5 0.00015 27.2 2.1 27 5-33 104-130 (164)
10 3oq3_A IFN-alpha-5, interferon 60.6 2.7 9.4E-05 28.3 0.9 27 5-33 108-134 (166)
11 2rps_A Chemokine; peptide, imm 60.5 2.9 9.8E-05 22.9 0.8 8 4-11 23-30 (32)
12 1au1_A Interferon-beta; helica 46.9 7.3 0.00025 26.2 1.3 27 5-33 110-136 (166)
13 1b5l_A Interferon TAU; cytokin 46.7 7.8 0.00027 26.3 1.4 27 5-33 108-134 (172)
14 4bbr_M Transcription initiatio 44.3 34 0.0011 24.6 4.5 39 10-56 143-181 (345)
15 1t1j_A Hypothetical protein; s 42.1 5.8 0.0002 25.7 0.2 16 19-34 2-17 (125)
16 2hy5_B Intracellular sulfur ox 38.1 15 0.0005 23.2 1.6 37 30-66 13-56 (136)
17 1at3_A Herpes simplex virus ty 35.7 18 0.0006 26.6 1.9 23 9-31 224-246 (247)
18 3k7a_M Transcription initiatio 34.3 19 0.00066 25.6 1.9 39 10-56 143-181 (345)
19 2lon_A HIG1 domain family memb 39.8 8.8 0.0003 24.5 0.0 21 42-63 31-51 (99)
20 1tt9_A Formimidoyltransferase- 32.9 15 0.00051 29.3 1.2 11 6-16 313-323 (541)
21 2cly_A ATP synthase B chain, m 32.3 9.5 0.00032 27.0 0.0 36 19-63 20-55 (214)
22 2pbk_A KSHV protease; KSHV, KS 31.7 22 0.00077 25.7 1.9 22 10-31 206-227 (228)
23 1o6e_A Capsid protein P40; pro 30.7 23 0.0008 25.7 1.8 23 9-31 212-234 (235)
24 2dx6_A Hypothetical protein TT 30.1 5.7 0.0002 25.2 -1.3 18 36-62 104-121 (159)
25 2eee_A Uncharacterized protein 28.7 5.7 0.00019 25.2 -1.5 19 36-63 108-126 (149)
26 1jx7_A Hypothetical protein YC 28.1 25 0.00085 19.9 1.3 34 31-65 10-53 (117)
27 3caz_A BAR protein; thermo-aci 26.6 29 0.00098 26.1 1.7 13 13-25 102-115 (294)
28 2lom_A HIG1 domain family memb 32.0 14 0.00049 23.2 0.0 21 42-63 30-50 (93)
29 3piw_A Type I interferon 2; ze 25.9 18 0.00062 24.3 0.5 16 16-33 120-135 (161)
30 1ied_A HCMV protease, capsid p 25.5 36 0.0012 25.1 2.1 22 10-31 233-255 (256)
31 3h90_A Ferrous-iron efflux pum 25.2 40 0.0014 22.7 2.1 39 26-64 63-101 (283)
32 2acf_A Replicase polyprotein 1 25.1 10 0.00035 25.4 -0.9 19 35-62 123-141 (182)
33 3gqe_A Non-structural protein 24.9 9.2 0.00032 25.4 -1.1 20 35-63 101-120 (168)
34 2jyc_A Uncharacterized protein 24.6 6.2 0.00021 25.7 -1.9 19 36-63 119-137 (160)
35 4gxw_A Adenosine deaminase; am 24.4 13 0.00045 27.2 -0.4 35 1-35 1-43 (380)
36 1wu3_I Interferon beta, IFN-be 24.3 30 0.001 23.2 1.3 19 13-33 113-131 (161)
37 1spv_A Putative polyprotein/ph 23.8 8.5 0.00029 25.3 -1.4 9 36-44 112-120 (184)
38 3mn5_S Protein spire, actin, a 23.1 36 0.0012 19.0 1.3 17 9-31 15-31 (38)
39 3lay_A Zinc resistance-associa 21.5 20 0.00067 24.4 0.0 18 37-54 33-51 (175)
40 1zp2_A RNA polymerase II holoe 21.5 1.6E+02 0.0055 19.1 4.5 40 10-56 45-84 (235)
41 2wzp_P Lactococcal phage P2 OR 21.3 19 0.00065 27.3 -0.1 24 18-41 24-50 (326)
42 2d1p_A TUSD, hypothetical UPF0 20.7 47 0.0016 21.0 1.7 35 31-65 21-63 (140)
43 3gpg_A NSP3, non-structural pr 20.5 12 0.00042 24.9 -1.2 19 35-62 107-125 (168)
44 1ylx_A Hypothetical protein AP 20.5 63 0.0022 21.3 2.3 19 7-25 5-24 (103)
45 1xkm_B Distinctin chain B; por 20.1 58 0.002 16.8 1.7 14 13-26 5-18 (26)
46 3ejf_A Non-structural protein 20.0 12 0.00042 25.2 -1.3 18 35-61 121-138 (176)
No 1
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=97.69 E-value=1.2e-05 Score=48.05 Aligned_cols=47 Identities=28% Similarity=0.234 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhhh-cccccCC-CCchhhhhhhHHHHHHHHHHhhhhhhhcc
Q 035248 12 EKLLEKQKHFQSIHK-HTYLKGP-MDKITSVAIPIALAASSLYLIGRGIYNMS 62 (69)
Q Consensus 12 ekl~e~Q~yfQ~i~k-htyLKG~-~DkItSvaIPlalaassl~ligRGiyNMS 62 (69)
+|+.|+|+.||+-.+ .+||||+ .|.+.- + ++.+.++.=++.++|+|-
T Consensus 3 NkV~e~Qk~FQ~~~g~pv~lKgg~sd~~Ly---~-~t~~l~~~g~~~~~y~l~ 51 (59)
T 1v54_J 3 NRVAEKQKLFQEDNGLPVHLKGGATDNILY---R-VTMTLCLGGTLYSLYCLG 51 (59)
T ss_dssp CCHHHHHHHHHCSSCCCTTTTTCHHHHHHH---H-HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCceeEeecCcCceeHH---H-HHHHHHHHHHHHHHHHHH
Confidence 489999999999765 8999997 888544 3 344444444778888873
No 2
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=97.49 E-value=3.5e-05 Score=48.71 Aligned_cols=47 Identities=28% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhhh-cccccCC-CCchhhhhhhHHHHHHHHHHhhhhhhhcc
Q 035248 12 EKLLEKQKHFQSIHK-HTYLKGP-MDKITSVAIPIALAASSLYLIGRGIYNMS 62 (69)
Q Consensus 12 ekl~e~Q~yfQ~i~k-htyLKG~-~DkItSvaIPlalaassl~ligRGiyNMS 62 (69)
+|+.|+|+.||+-.+ .+||||+ .|.+.- -++.+.++.=++-++|++-
T Consensus 24 NkVpe~Qk~FQ~~~g~PV~lKggrsd~~Ly----~~t~~l~~~G~~~~ly~l~ 72 (80)
T 2y69_J 24 NRVAEKQKLFQEDNGLPVHLKGGATDNILY----RVTMTLCLGGTLYSLYCLG 72 (80)
T ss_dssp CCHHHHHHHHTCSSCCCGGGTTCHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHhcCCCCceeeeecCccceeHH----HHHHHHHHHHHHHHHHHHH
Confidence 699999999999765 8999997 888544 3344444544777788773
No 3
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=76.81 E-value=1.1 Score=27.26 Aligned_cols=36 Identities=19% Similarity=0.432 Sum_probs=28.5
Q ss_pred ccCCCCchh-hhhhhHHHHHH------HHHHhhhhhhhccccC
Q 035248 30 LKGPMDKIT-SVAIPIALAAS------SLYLIGRGIYNMSHGI 65 (69)
Q Consensus 30 LKG~~DkIt-SvaIPlalaas------sl~ligRGiyNMShGi 65 (69)
=++||..-. .=|+-+|+|++ ++|+++-|+||...|.
T Consensus 9 ~~~P~g~~~~~~al~~a~a~~a~~~~v~vff~~DGV~~~~~~q 51 (119)
T 2d1p_B 9 STAPHGTAAGREGLDALLATSALTDDLAVFFIADGVFQLLPGQ 51 (119)
T ss_dssp CSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGGGGGGGCTTC
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEehHHHHHHhccC
Confidence 356776543 44688999998 9999999999998764
No 4
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=76.73 E-value=4.5 Score=25.78 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHhhhhhcccccCCCCchhhhhhhHHHHHHHHHHhhh
Q 035248 10 PREKLLEKQKHFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGR 56 (69)
Q Consensus 10 PRekl~e~Q~yfQ~i~khtyLKG~~DkItSvaIPlalaassl~ligR 56 (69)
|.+-+-.++.+|+....+-.++|+. |-++||+++|+..|
T Consensus 26 ~~~v~~~A~~l~~~~~~~~~~~gr~--------~~~vaaAclylAcr 64 (200)
T 1ais_B 26 PRHVEEEAARLYREAVRKGLIRGRS--------IESVMAACVYAACR 64 (200)
T ss_dssp CHHHHHHHHHHHHHHHTTTTTTTCC--------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCcCCCC--------HHHHHHHHHHHHHH
Confidence 5566667899999998888888884 57888999999887
No 5
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=70.10 E-value=1.4 Score=34.86 Aligned_cols=17 Identities=41% Similarity=0.800 Sum_probs=14.7
Q ss_pred HHhhhhhhhccccCCCC
Q 035248 52 YLIGRGIYNMSHGIGKK 68 (69)
Q Consensus 52 ~ligRGiyNMShGigkK 68 (69)
-|+-|--|++.|||||.
T Consensus 82 ~lv~rrh~~~~HGiGRS 98 (501)
T 3hl2_A 82 ALVARRHYRFIHGIGRS 98 (501)
T ss_dssp HHHHHHTTTCCSCBSCS
T ss_pred HHHHhhccCcccCCCCc
Confidence 36789999999999984
No 6
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=68.80 E-value=8.3 Score=24.73 Aligned_cols=39 Identities=28% Similarity=0.455 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHhhhhhcccccCCCCchhhhhhhHHHHHHHHHHhhh
Q 035248 10 PREKLLEKQKHFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGR 56 (69)
Q Consensus 10 PRekl~e~Q~yfQ~i~khtyLKG~~DkItSvaIPlalaassl~ligR 56 (69)
|.+-+-.++.||+.....-.++|+. |-.++++++|+-.|
T Consensus 22 ~~~v~~~A~~~~~r~~~~~~~~~~~--------~~~v~aaclylAcK 60 (207)
T 1c9b_A 22 PRNIVDRTNNLFKQVYEQKSLKGRA--------NDAIASACLYIACR 60 (207)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSTTSC--------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCcCCCC--------HHHHHHHHHHHHHH
Confidence 6677778899999988777778874 67888999999876
No 7
>3se4_B Interferon omega-1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens}
Probab=66.48 E-value=1.8 Score=29.53 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=17.6
Q ss_pred CCCCCcHHHHHHHHHHHhhhhhcccccCC
Q 035248 5 EVPFRPREKLLEKQKHFQSIHKHTYLKGP 33 (69)
Q Consensus 5 e~PF~PRekl~e~Q~yfQ~i~khtyLKG~ 33 (69)
|+|-.++...++-.+|||.|++ |||..
T Consensus 113 ~~~l~~~~~~l~lkkYF~rI~~--yLk~K 139 (177)
T 3se4_B 113 ESAGAISSPALTLRRYFQGIRV--YLKEK 139 (177)
T ss_dssp -------CHHHHHHHHHHHHHH--HHHHH
T ss_pred cCccccccchhHHHHHHHHHHH--HHHhc
Confidence 5666777778899999999977 99875
No 8
>3s9d_A Interferon alpha-2; human, type I interferons, IFNA2, ifnar2, SUB-complex of the interferon signaling complex; 2.00A {Homo sapiens} PDB: 3se3_B* 2lms_A* 1itf_A 2hym_B 2ksx_A 2kz1_A 2lag_A 1rh2_A 3ux9_A
Probab=66.31 E-value=1.8 Score=29.27 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=17.7
Q ss_pred CCCCCcHHHHHHHHHHHhhhhhcccccCC
Q 035248 5 EVPFRPREKLLEKQKHFQSIHKHTYLKGP 33 (69)
Q Consensus 5 e~PF~PRekl~e~Q~yfQ~i~khtyLKG~ 33 (69)
++|-.++...++-.+|||.|++ |||..
T Consensus 110 ~~~~~~~~~~l~lkkYF~rI~~--yLk~K 136 (168)
T 3s9d_A 110 ETPLMKEDSILAVRKYFQRITL--YLKEK 136 (168)
T ss_dssp -------CHHHHHHHHHHHHHH--HHHHT
T ss_pred cCccccccchhHHHHHHHHHHH--HHHhc
Confidence 4666677778899999999977 99876
No 9
>3piv_A Interferon; zebrafish, cytokine; 2.09A {Danio rerio}
Probab=61.12 E-value=4.5 Score=27.23 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCCCCcHHHHHHHHHHHhhhhhcccccCC
Q 035248 5 EVPFRPREKLLEKQKHFQSIHKHTYLKGP 33 (69)
Q Consensus 5 e~PF~PRekl~e~Q~yfQ~i~khtyLKG~ 33 (69)
+.|-.++...+.--+|||.|++ |||..
T Consensus 104 ~~~~~~~~~~l~lk~YF~rI~~--yLk~K 130 (164)
T 3piv_A 104 AKPAHKESYEIRIKRHFRTLKK--ILKKK 130 (164)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHH--HHHHT
T ss_pred cccccccchhHHHHHHHHHHHH--HHHHc
Confidence 5677777788889999999975 99876
No 10
>3oq3_A IFN-alpha-5, interferon alpha-5; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Mus musculus} SCOP: a.26.1.3
Probab=60.64 E-value=2.7 Score=28.34 Aligned_cols=27 Identities=33% Similarity=0.579 Sum_probs=21.0
Q ss_pred CCCCCcHHHHHHHHHHHhhhhhcccccCC
Q 035248 5 EVPFRPREKLLEKQKHFQSIHKHTYLKGP 33 (69)
Q Consensus 5 e~PF~PRekl~e~Q~yfQ~i~khtyLKG~ 33 (69)
++|-.++.-.++-.+|||.|++ |||..
T Consensus 108 ~~~l~~~~~~l~lkkYF~rI~~--yLk~K 134 (166)
T 3oq3_A 108 ESPLTQEDSLLAVRKYFHRITV--YLREK 134 (166)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH--HHHHT
T ss_pred cCccccccchhHHHHHHHHHHH--HHHhc
Confidence 4555556667888999999977 99876
No 11
>2rps_A Chemokine; peptide, immune system; NMR {Pseudaletia separata}
Probab=60.51 E-value=2.9 Score=22.90 Aligned_cols=8 Identities=63% Similarity=1.078 Sum_probs=6.7
Q ss_pred CCCCCCcH
Q 035248 4 TEVPFRPR 11 (69)
Q Consensus 4 ~e~PF~PR 11 (69)
|||||.|.
T Consensus 23 TEpPFd~d 30 (32)
T 2rps_A 23 TEPPFDPD 30 (32)
T ss_dssp CCCCCCCC
T ss_pred cCCCCCcC
Confidence 79999873
No 12
>1au1_A Interferon-beta; helical cytokine, immune system, cytokine; HET: BGC G6D; 2.20A {Homo sapiens} SCOP: a.26.1.3
Probab=46.95 E-value=7.3 Score=26.24 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=19.2
Q ss_pred CCCCCcHHHHHHHHHHHhhhhhcccccCC
Q 035248 5 EVPFRPREKLLEKQKHFQSIHKHTYLKGP 33 (69)
Q Consensus 5 e~PF~PRekl~e~Q~yfQ~i~khtyLKG~ 33 (69)
|+|..--...+.-.+|||.|++ |||..
T Consensus 110 ~~~l~~~~~~l~lk~YF~rI~~--yLk~K 136 (166)
T 1au1_A 110 DFTRGKLMSSLHLKRYYGRILH--YLKAK 136 (166)
T ss_dssp SCCCCCTTTHHHHHHHHHHHHH--HHHHT
T ss_pred cCccccccchhHHHHHHHHHHH--HHHhC
Confidence 4443333356778899999977 99876
No 13
>1b5l_A Interferon TAU; cytokine; 2.10A {Pichia pastoris} SCOP: a.26.1.3
Probab=46.72 E-value=7.8 Score=26.35 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=16.8
Q ss_pred CCCCCcHHHHHHHHHHHhhhhhcccccCC
Q 035248 5 EVPFRPREKLLEKQKHFQSIHKHTYLKGP 33 (69)
Q Consensus 5 e~PF~PRekl~e~Q~yfQ~i~khtyLKG~ 33 (69)
|+|..--...+.-.+|||.|++ |||..
T Consensus 108 ~~~l~~~~~~l~lk~YF~rI~~--yLk~K 134 (172)
T 1b5l_A 108 DSELGNMDPIVTVKKYFQGIYD--YLQEK 134 (172)
T ss_dssp ------CHHHHHHHHHHHHHHH--HHHHT
T ss_pred cCCcccccchhHHHHHHHHHHH--HHHhC
Confidence 3443322356788999999976 99876
No 14
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=44.32 E-value=34 Score=24.64 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHhhhhhcccccCCCCchhhhhhhHHHHHHHHHHhhh
Q 035248 10 PREKLLEKQKHFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGR 56 (69)
Q Consensus 10 PRekl~e~Q~yfQ~i~khtyLKG~~DkItSvaIPlalaassl~ligR 56 (69)
|+.-.=.++.+|+.+..+-.++|+. .-+++|+++|+..|
T Consensus 143 p~~v~d~A~~lyk~a~~~~~~rGrs--------~e~vaAAclYiACR 181 (345)
T 4bbr_M 143 PKIVKDCAKEAYKLCHDEKTLKGKS--------MESIMAASILIGCR 181 (345)
T ss_dssp CHHHHHHHHHHHHHHTTCTTTTTCC--------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccCCC--------HHHHHHHHHHHHHH
Confidence 5555667889999999888999984 24677888998876
No 15
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=42.14 E-value=5.8 Score=25.71 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=10.5
Q ss_pred HHHhhhhhcccccCCC
Q 035248 19 KHFQSIHKHTYLKGPM 34 (69)
Q Consensus 19 ~yfQ~i~khtyLKG~~ 34 (69)
-|||.+-+.+|+-|||
T Consensus 2 ~~~~~~M~~IYIagPy 17 (125)
T 1t1j_A 2 LYFQGHMRKIFLACPY 17 (125)
T ss_dssp -----CCCEEEEECCC
T ss_pred chhhhhhhheeEECCC
Confidence 3999999999999997
No 16
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=38.09 E-value=15 Score=23.21 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=26.2
Q ss_pred ccCCCCchhhh-hhhHHHHH------HHHHHhhhhhhhccccCC
Q 035248 30 LKGPMDKITSV-AIPIALAA------SSLYLIGRGIYNMSHGIG 66 (69)
Q Consensus 30 LKG~~DkItSv-aIPlalaa------ssl~ligRGiyNMShGig 66 (69)
-++||....+- |+=+|+|+ .++|+++-|+||..-|.-
T Consensus 13 ~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff~~DGV~~~~~~~~ 56 (136)
T 2hy5_B 13 RKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDDGVYQLTRGQD 56 (136)
T ss_dssp CSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGGGGGGGBSCCC
T ss_pred eCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEEhHHHHHHhcCCC
Confidence 35677654443 67777764 378999999999987653
No 17
>1at3_A Herpes simplex virus type II protease; serine protease, viral protease, HSV2 protease; HET: DFP; 2.50A {Human herpesvirus 2} SCOP: b.57.1.1
Probab=35.73 E-value=18 Score=26.59 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=19.8
Q ss_pred CcHHHHHHHHHHHhhhhhccccc
Q 035248 9 RPREKLLEKQKHFQSIHKHTYLK 31 (69)
Q Consensus 9 ~PRekl~e~Q~yfQ~i~khtyLK 31 (69)
|-|=.+++.+|--..|.+|||||
T Consensus 224 rdR~~~L~~dr~~AgI~~~tYLk 246 (247)
T 1at3_A 224 RDRWSLVAERRRQAGIAGHTYLQ 246 (247)
T ss_dssp SCHHHHHHHHHHHTTBCSSCSSC
T ss_pred HHHHHHHHHhHHhcCCCcccccc
Confidence 34667889999999999999998
No 18
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=34.25 E-value=19 Score=25.56 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHhhhhhcccccCCCCchhhhhhhHHHHHHHHHHhhh
Q 035248 10 PREKLLEKQKHFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGR 56 (69)
Q Consensus 10 PRekl~e~Q~yfQ~i~khtyLKG~~DkItSvaIPlalaassl~ligR 56 (69)
|+.-+=.++.+|+....+-.+||+. .-+++|++||+..|
T Consensus 143 p~~v~d~A~~lyk~~~~~~~~kgr~--------~~~vaaAclyiAcR 181 (345)
T 3k7a_M 143 PKIVKDCAKEAYKLCHDEKTLKGKS--------MESIMAASILIGCR 181 (345)
T ss_dssp CHHHHTHHHHHHHHHSSSCSSCCCC--------SHHHHTTTTTTTSB
T ss_pred CHHHHHHHHHHHHHHHhcCcccCCc--------HHHHHHHHHHHHHH
Confidence 4555556889999999888899973 24677888998877
No 19
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=39.84 E-value=8.8 Score=24.46 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHhhhhhhhccc
Q 035248 42 IPIALAASSLYLIGRGIYNMSH 63 (69)
Q Consensus 42 IPlalaassl~ligRGiyNMSh 63 (69)
+|+++++++..++ -|+||+-+
T Consensus 31 vpIg~l~~~~vl~-~Gl~~~~~ 51 (99)
T 2lon_A 31 VPIGLGGCLVVAA-YRIYRLRS 51 (99)
Confidence 5777776665554 58999854
No 20
>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A
Probab=32.86 E-value=15 Score=29.30 Aligned_cols=11 Identities=45% Similarity=1.216 Sum_probs=10.3
Q ss_pred CCCCcHHHHHH
Q 035248 6 VPFRPREKLLE 16 (69)
Q Consensus 6 ~PF~PRekl~e 16 (69)
.||.|+||++|
T Consensus 313 ~~f~p~~~iie 323 (541)
T 1tt9_A 313 APFDPKERIIE 323 (541)
T ss_pred CCCChhHHHHH
Confidence 69999999998
No 21
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=32.33 E-value=9.5 Score=26.98 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHHhhhhhcccccCCCCchhhhhhhHHHHHHHHHHhhhhhhhccc
Q 035248 19 KHFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMSH 63 (69)
Q Consensus 19 ~yfQ~i~khtyLKG~~DkItSvaIPlalaassl~ligRGiyNMSh 63 (69)
.+||++..-|=..||| ...++.++|++.+.||-|.|
T Consensus 20 ~wf~~l~~KTGvtGPY---------~~~~GL~~yliSKEiyVvne 55 (214)
T 2cly_A 20 EFFQFLYPKTGVTGPY---------VLGTGLILYLLSKEIYVITP 55 (214)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHhccccchH---------HHHHHHHHHHHcCceEEEec
Confidence 4689888877777766 23456678999999998877
No 22
>2pbk_A KSHV protease; KSHV, KSHV protease, herpesvirus protease, viral protease, V protein; 1.73A {Human herpesvirus} SCOP: b.57.1.1 PDB: 1fl1_A 3njq_A*
Probab=31.69 E-value=22 Score=25.65 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHhhhhhccccc
Q 035248 10 PREKLLEKQKHFQSIHKHTYLK 31 (69)
Q Consensus 10 PRekl~e~Q~yfQ~i~khtyLK 31 (69)
-|=.+++.+|--..|.+|||||
T Consensus 206 dR~~~L~~dr~~AgI~~~tYLk 227 (228)
T 2pbk_A 206 DRLDLLKTDRGVASILSPVYLK 227 (228)
T ss_dssp THHHHHHHHHHHTTBCSSCSCC
T ss_pred HHHHHHHHHHHhcCCCcccccc
Confidence 4667889999999999999998
No 23
>1o6e_A Capsid protein P40; proteinase, beta-barrel, hydrolase, serine protease, structu proteomics in europe, spine, structural genomics; 2.3A {Human herpesvirus 4} SCOP: b.57.1.1
Probab=30.74 E-value=23 Score=25.66 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=19.9
Q ss_pred CcHHHHHHHHHHHhhhhhccccc
Q 035248 9 RPREKLLEKQKHFQSIHKHTYLK 31 (69)
Q Consensus 9 ~PRekl~e~Q~yfQ~i~khtyLK 31 (69)
|-|=.+++.+|--..|.+|||||
T Consensus 212 rdR~~~L~~dr~~AgI~~~tYLk 234 (235)
T 1o6e_A 212 RNRVETLRQDRGVANIPAESYLK 234 (235)
T ss_dssp SSHHHHHHHHHHHTTCCSSSSCC
T ss_pred HHHHHHHHHHHHhcCCCcccccc
Confidence 34667889999999999999998
No 24
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=30.06 E-value=5.7 Score=25.21 Aligned_cols=18 Identities=28% Similarity=0.722 Sum_probs=13.1
Q ss_pred chhhhhhhHHHHHHHHHHhhhhhhhcc
Q 035248 36 KITSVAIPIALAASSLYLIGRGIYNMS 62 (69)
Q Consensus 36 kItSvaIPlalaassl~ligRGiyNMS 62 (69)
.++|||+|. |+-|+|..+
T Consensus 104 ~~~sIa~P~---------igtG~~g~p 121 (159)
T 2dx6_A 104 GLKTVAFPL---------LGTGVGGLP 121 (159)
T ss_dssp TCSEEEECC---------TTSSTTCCC
T ss_pred CCcEEEECC---------ccCCCCCCC
Confidence 589999996 566666544
No 25
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=28.69 E-value=5.7 Score=25.21 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=13.5
Q ss_pred chhhhhhhHHHHHHHHHHhhhhhhhccc
Q 035248 36 KITSVAIPIALAASSLYLIGRGIYNMSH 63 (69)
Q Consensus 36 kItSvaIPlalaassl~ligRGiyNMSh 63 (69)
.++|||+|. ||-|+|...|
T Consensus 108 ~~~sIa~P~---------IgtG~~G~~~ 126 (149)
T 2eee_A 108 GVTDLSMPR---------IGCGLDRLQW 126 (149)
T ss_dssp TCCEEECCC---------CCCTTTTCCH
T ss_pred CCCEEEeCC---------CCCCCCCCCH
Confidence 578999996 5666665543
No 26
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=28.06 E-value=25 Score=19.87 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=21.3
Q ss_pred cCCCC--chhhhhhhHHHHHH--------HHHHhhhhhhhccccC
Q 035248 31 KGPMD--KITSVAIPIALAAS--------SLYLIGRGIYNMSHGI 65 (69)
Q Consensus 31 KG~~D--kItSvaIPlalaas--------sl~ligRGiyNMShGi 65 (69)
.|||| +..+ |.=+|.++. ++|+.+.|+++..-|.
T Consensus 10 ~~p~~~~~~~~-al~~a~~~~~~~g~~~v~vff~~dgV~~~~~~~ 53 (117)
T 1jx7_A 10 GAPYGSESLFN-SLRLAIALREQESNLDLRLFLMSDAVTAGLRGQ 53 (117)
T ss_dssp CCTTTCSHHHH-HHHHHHHHHHHCTTCEEEEEECGGGGGGGBSCC
T ss_pred CCCCCcHHHHH-HHHHHHHHHhcCCCccEEEEEEchHHHHHhcCC
Confidence 56663 3333 555555533 6788999999876553
No 27
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=26.62 E-value=29 Score=26.12 Aligned_cols=13 Identities=62% Similarity=0.649 Sum_probs=9.7
Q ss_pred HHHHH-HHHHhhhh
Q 035248 13 KLLEK-QKHFQSIH 25 (69)
Q Consensus 13 kl~e~-Q~yfQ~i~ 25 (69)
+|+|+ |+|||-|.
T Consensus 102 rllekiqkyfQ~IE 115 (294)
T 3caz_A 102 RLLEKIQKYRQEIE 115 (294)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55654 99999875
No 28
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=32.00 E-value=14 Score=23.19 Aligned_cols=21 Identities=19% Similarity=0.597 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHhhhhhhhccc
Q 035248 42 IPIALAASSLYLIGRGIYNMSH 63 (69)
Q Consensus 42 IPlalaassl~ligRGiyNMSh 63 (69)
+|++.++++..+ +-|+||+..
T Consensus 30 vpIg~~~~~~vl-~~Gl~~~~~ 50 (93)
T 2lom_A 30 VPVGIAGFAAIV-AYGLYKLKS 50 (93)
Confidence 567766665443 368898874
No 29
>3piw_A Type I interferon 2; zebrafish, interleukin, cytokine; 1.49A {Danio rerio}
Probab=25.86 E-value=18 Score=24.27 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=13.9
Q ss_pred HHHHHHhhhhhcccccCC
Q 035248 16 EKQKHFQSIHKHTYLKGP 33 (69)
Q Consensus 16 e~Q~yfQ~i~khtyLKG~ 33 (69)
+-.+|||.|++ |||..
T Consensus 120 ~lkkYF~rI~~--yLk~K 135 (161)
T 3piw_A 120 ALKSYFNKLAT--LLRNK 135 (161)
T ss_dssp HHHHHHHHHHH--HHHHT
T ss_pred HHHHHHHHHHH--HHHhc
Confidence 77899999987 99876
No 30
>1ied_A HCMV protease, capsid protein P40: assemblin protease; coat protein, hydrolase, serine protease, catalytic triad; 2.00A {Human herpesvirus 5} SCOP: b.57.1.1 PDB: 1id4_A 1njt_A* 1nju_A* 1nkm_A* 1ief_A 1ieg_A 1iec_A* 2wpo_A* 1nkk_A* 1jq7_A* 1lay_A 1wpo_A 1cmv_A 1jq6_A
Probab=25.46 E-value=36 Score=25.07 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHhhhh-hccccc
Q 035248 10 PREKLLEKQKHFQSIH-KHTYLK 31 (69)
Q Consensus 10 PRekl~e~Q~yfQ~i~-khtyLK 31 (69)
-|=.+++.+|--..|. +|||||
T Consensus 233 dR~~~L~~dk~~A~I~~~~TYLk 255 (256)
T 1ied_A 233 ERLPKLRYDKQLVGVTERESYVK 255 (256)
T ss_dssp THHHHHHHHHHHTTCCGGGSCCC
T ss_pred HHHHHHHHhHhhcCCCCCccccc
Confidence 4667889999999999 999998
No 31
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=25.16 E-value=40 Score=22.66 Aligned_cols=39 Identities=21% Similarity=0.442 Sum_probs=33.7
Q ss_pred hcccccCCCCchhhhhhhHHHHHHHHHHhhhhhhhcccc
Q 035248 26 KHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMSHG 64 (69)
Q Consensus 26 khtyLKG~~DkItSvaIPlalaassl~ligRGiyNMShG 64 (69)
+|+|=.|+...+.+...-+.+.+++++++..++..+.|+
T Consensus 63 ~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~eai~~l~~~ 101 (283)
T 3h90_A 63 NHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISP 101 (283)
T ss_dssp SCSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 688888888889998888999999999998888887765
No 32
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=25.10 E-value=10 Score=25.42 Aligned_cols=19 Identities=16% Similarity=0.473 Sum_probs=13.9
Q ss_pred CchhhhhhhHHHHHHHHHHhhhhhhhcc
Q 035248 35 DKITSVAIPIALAASSLYLIGRGIYNMS 62 (69)
Q Consensus 35 DkItSvaIPlalaassl~ligRGiyNMS 62 (69)
..+.|||+|+ |+-|+|...
T Consensus 123 ~~~~SIAfP~---------IstGi~G~p 141 (182)
T 2acf_A 123 NSQDILLAPL---------LSAGIFGAK 141 (182)
T ss_dssp GGSSEEEECC---------TTCGGGCCC
T ss_pred cCCCEEEECC---------cccCCCCCC
Confidence 4799999996 566666543
No 33
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=24.87 E-value=9.2 Score=25.45 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=14.7
Q ss_pred CchhhhhhhHHHHHHHHHHhhhhhhhccc
Q 035248 35 DKITSVAIPIALAASSLYLIGRGIYNMSH 63 (69)
Q Consensus 35 DkItSvaIPlalaassl~ligRGiyNMSh 63 (69)
..+.|||+|. |+-|+|....
T Consensus 101 ~~~~SIAfP~---------IstG~~g~p~ 120 (168)
T 3gqe_A 101 NNYKSVAIPL---------LSTGIFSGNK 120 (168)
T ss_dssp TTCSEEEEEC---------TTSSTTSCSS
T ss_pred cCCCEEEECC---------cccCCCCCCH
Confidence 4789999997 6667776543
No 34
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=24.61 E-value=6.2 Score=25.67 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=13.4
Q ss_pred chhhhhhhHHHHHHHHHHhhhhhhhccc
Q 035248 36 KITSVAIPIALAASSLYLIGRGIYNMSH 63 (69)
Q Consensus 36 kItSvaIPlalaassl~ligRGiyNMSh 63 (69)
.++|||+|. ||-|+|...|
T Consensus 119 ~~~sIa~P~---------IgtGi~G~p~ 137 (160)
T 2jyc_A 119 GVTDLSMPR---------IGCGLDRLQW 137 (160)
T ss_dssp TCCEEEEES---------CCSSCSSSCH
T ss_pred CCCEEEeCC---------CCCCCCCCCH
Confidence 578999996 5666665543
No 35
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=24.38 E-value=13 Score=27.20 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=22.9
Q ss_pred CCCCCCCCCcH-----HHHHHHHHHHhhhhh---cccccCCCC
Q 035248 1 MSETEVPFRPR-----EKLLEKQKHFQSIHK---HTYLKGPMD 35 (69)
Q Consensus 1 ~~~~e~PF~PR-----ekl~e~Q~yfQ~i~k---htyLKG~~D 35 (69)
|.++-|.+.|. +-.=..+.|++++.| |.||-|..-
T Consensus 1 ~~~~~p~~~p~~~~~~~~~~~~~~Fi~~LPKvELH~HLdGsl~ 43 (380)
T 4gxw_A 1 MVKGTPGNVPAARTGIEITAAHRAFFHALPKVELHCHLLGAVR 43 (380)
T ss_dssp ---CCGGGCCCCCSCCCCCHHHHHHHHHSCEEECCBBGGGCCC
T ss_pred CCCCCCCCCCCccccccCCHHHHHHHHhChhHHhhcCCcCCCC
Confidence 55666666663 223345789999998 999999854
No 36
>1wu3_I Interferon beta, IFN-beta; alpha-helix-bundle, cytokine; 2.15A {Mus musculus} SCOP: a.26.1.3 PDB: 1ifa_A
Probab=24.32 E-value=30 Score=23.15 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhhhcccccCC
Q 035248 13 KLLEKQKHFQSIHKHTYLKGP 33 (69)
Q Consensus 13 kl~e~Q~yfQ~i~khtyLKG~ 33 (69)
..+.-.+|||.|++ |||..
T Consensus 113 ~~l~lk~YF~rI~~--yLk~K 131 (161)
T 1wu3_I 113 TALHLKSYYWRVQR--YLKLM 131 (161)
T ss_dssp HHHHHHHHHHHHHH--HHHHT
T ss_pred chhHHHHHHHHHHH--HHHhC
Confidence 45777899999977 99876
No 37
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=23.76 E-value=8.5 Score=25.34 Aligned_cols=9 Identities=56% Similarity=0.656 Sum_probs=7.8
Q ss_pred chhhhhhhH
Q 035248 36 KITSVAIPI 44 (69)
Q Consensus 36 kItSvaIPl 44 (69)
.+.|||+|+
T Consensus 112 ~~~SIAfP~ 120 (184)
T 1spv_A 112 SYTSVAFPA 120 (184)
T ss_dssp TCSEEEECC
T ss_pred CCceEEecc
Confidence 689999996
No 38
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=23.10 E-value=36 Score=18.99 Aligned_cols=17 Identities=59% Similarity=0.800 Sum_probs=11.7
Q ss_pred CcHHHHHHHHHHHhhhhhccccc
Q 035248 9 RPREKLLEKQKHFQSIHKHTYLK 31 (69)
Q Consensus 9 ~PRekl~e~Q~yfQ~i~khtyLK 31 (69)
.|||.|+| ||++-.-||
T Consensus 15 ~preql~e------sir~g~elk 31 (38)
T 3mn5_S 15 SPREQLME------SIRKGKELK 31 (38)
T ss_pred CcHHHHHH------HHHcccccc
Confidence 48999886 566655554
No 39
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.48 E-value=20 Score=24.39 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=0.0
Q ss_pred hhhhhhh-HHHHHHHHHHh
Q 035248 37 ITSVAIP-IALAASSLYLI 54 (69)
Q Consensus 37 ItSvaIP-lalaassl~li 54 (69)
|+.||+| ++|+++|.|--
T Consensus 33 la~~al~~l~l~s~~A~A~ 51 (175)
T 3lay_A 33 IALIALSLLALSSGAAFAG 51 (175)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHhHHHHhc
Confidence 6788899 77777666544
No 40
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=21.46 E-value=1.6e+02 Score=19.05 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHhhhhhcccccCCCCchhhhhhhHHHHHHHHHHhhh
Q 035248 10 PREKLLEKQKHFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGR 56 (69)
Q Consensus 10 PRekl~e~Q~yfQ~i~khtyLKG~~DkItSvaIPlalaassl~ligR 56 (69)
|.+-+.-++.||+..-...-+++++| |-.+++++||+-.|
T Consensus 45 ~~~t~~~A~~~~~Rf~~~~~~~~~~~-------~~lv~~acL~lA~K 84 (235)
T 1zp2_A 45 RQRVLATAIVLLRRYMLKKNEEKGFS-------LEALVATCIYLSCK 84 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHCCSCCCCC-------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccccccC-------HHHHHHHHHHHHhc
Confidence 45556667777776543333344222 45677888888765
No 41
>2wzp_P Lactococcal phage P2 ORF15; baseplate, viral protein; 2.60A {Lactococcus phage P2} PDB: 2x53_S 2x54_S 2x5a_S
Probab=21.34 E-value=19 Score=27.34 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=16.8
Q ss_pred HHHHhhhhh---cccccCCCCchhhhh
Q 035248 18 QKHFQSIHK---HTYLKGPMDKITSVA 41 (69)
Q Consensus 18 Q~yfQ~i~k---htyLKG~~DkItSva 41 (69)
.-|||.++. ||-|.|..|||-.|.
T Consensus 24 nlyfqgvrqykihtnldgtddkvwdvt 50 (326)
T 2wzp_P 24 NLYFQGVRQYKIHTNLDGTDDKVWDVT 50 (326)
T ss_dssp -----CCCEEEEESSTTSTTCCEEETT
T ss_pred hhhhhheeeeEEeccCCCCccceEeec
Confidence 359999984 999999999998775
No 42
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=20.70 E-value=47 Score=21.01 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=24.7
Q ss_pred cCCCC-chhhhhhhHHHHHH-------HHHHhhhhhhhccccC
Q 035248 31 KGPMD-KITSVAIPIALAAS-------SLYLIGRGIYNMSHGI 65 (69)
Q Consensus 31 KG~~D-kItSvaIPlalaas-------sl~ligRGiyNMShGi 65 (69)
.+||+ .-.+-|.=+|+|++ ++|+++-|+||..-|.
T Consensus 21 ~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~~DGV~~a~~~q 63 (140)
T 2d1p_A 21 GPAYGTQQASSAFQFAQALIADGHELSSVFFYREGVYNANQLT 63 (140)
T ss_dssp SCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECGGGGGGGBTTC
T ss_pred CCCCCcHHHHHHHHHHHHHHHCCCccCEEEEechHHHHHhcCC
Confidence 35565 33445566777765 7899999999988664
No 43
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=20.52 E-value=12 Score=24.91 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=14.1
Q ss_pred CchhhhhhhHHHHHHHHHHhhhhhhhcc
Q 035248 35 DKITSVAIPIALAASSLYLIGRGIYNMS 62 (69)
Q Consensus 35 DkItSvaIPlalaassl~ligRGiyNMS 62 (69)
..+.|||+|+ |+-|+|...
T Consensus 107 ~~~~SIAfP~---------IstGi~g~P 125 (168)
T 3gpg_A 107 LGVNSVAIPL---------LSTGVYSGG 125 (168)
T ss_dssp HTCSEEEEEC---------TTSSTTSTT
T ss_pred hCCcEEEECc---------cccCCCCCC
Confidence 4689999997 666776554
No 44
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=20.47 E-value=63 Score=21.26 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=14.6
Q ss_pred CCCcHHHHHH-HHHHHhhhh
Q 035248 7 PFRPREKLLE-KQKHFQSIH 25 (69)
Q Consensus 7 PF~PRekl~e-~Q~yfQ~i~ 25 (69)
-|.|||.+++ -|.-|+++-
T Consensus 5 ef~~Re~ii~el~~~~~~~l 24 (103)
T 1ylx_A 5 EFAPRSVVIEEFIDTLEPMM 24 (103)
T ss_dssp CCBCHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHH
Confidence 3999999885 577787764
No 45
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=20.15 E-value=58 Score=16.82 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhhh
Q 035248 13 KLLEKQKHFQSIHK 26 (69)
Q Consensus 13 kl~e~Q~yfQ~i~k 26 (69)
-|+|+.+|...+|+
T Consensus 5 gliearkyleqlhr 18 (26)
T 1xkm_B 5 GLIEARKYLEQLHR 18 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47899999998874
No 46
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=20.02 E-value=12 Score=25.19 Aligned_cols=18 Identities=22% Similarity=0.724 Sum_probs=13.9
Q ss_pred CchhhhhhhHHHHHHHHHHhhhhhhhc
Q 035248 35 DKITSVAIPIALAASSLYLIGRGIYNM 61 (69)
Q Consensus 35 DkItSvaIPlalaassl~ligRGiyNM 61 (69)
..+.|||+|+ |+-|+|..
T Consensus 121 ~~~~SIAfPa---------IstGi~g~ 138 (176)
T 3ejf_A 121 DGVVNYVVPV---------LSLGIFGV 138 (176)
T ss_dssp TTCCEEEEEC---------CCTTSTTC
T ss_pred cCCcEEEECc---------cccCCCCC
Confidence 6799999997 66666654
Done!