Query 035253
Match_columns 69
No_of_seqs 108 out of 171
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 10:25:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02993 lupeol synthase 100.0 6.6E-35 1.4E-39 238.5 6.8 69 1-69 1-71 (763)
2 PLN03012 Camelliol C synthase 100.0 8E-35 1.7E-39 238.0 6.7 69 1-69 1-71 (759)
3 KOG0497 Oxidosqualene-lanoster 99.9 2.2E-28 4.8E-33 200.9 3.1 69 1-69 1-71 (760)
4 smart00120 HX Hemopexin-like r 81.9 0.86 1.9E-05 23.8 1.2 13 20-32 15-27 (45)
5 PF00045 Hemopexin: Hemopexin; 76.9 1.3 2.8E-05 23.9 0.9 12 20-31 15-26 (45)
6 COG3592 Uncharacterized conser 76.7 1.9 4.2E-05 27.7 1.8 29 10-43 34-62 (74)
7 COG2173 DdpX D-alanyl-D-alanin 75.9 1 2.2E-05 33.7 0.3 20 16-35 51-71 (211)
8 PF01011 PQQ: PQQ enzyme repea 70.7 3 6.6E-05 21.9 1.4 23 11-33 9-31 (38)
9 PF13387 DUF4105: Domain of un 69.6 3.5 7.6E-05 28.0 1.8 25 15-40 88-112 (176)
10 PF07477 Glyco_hydro_67C: Glyc 66.3 2.3 5E-05 31.9 0.4 40 21-64 13-52 (225)
11 smart00564 PQQ beta-propeller 63.6 7.4 0.00016 18.9 1.9 19 11-29 15-33 (33)
12 PF09292 Neil1-DNA_bind: Endon 60.8 4.5 9.8E-05 23.3 0.9 16 11-26 14-29 (39)
13 PRK10178 D-alanyl-D-alanine di 60.6 7 0.00015 28.2 2.0 33 15-49 24-58 (184)
14 PF05979 DUF896: Bacterial pro 54.4 16 0.00034 22.7 2.6 20 32-51 18-37 (65)
15 PF09164 VitD-bind_III: Vitami 52.3 19 0.00042 22.8 2.8 23 30-53 27-49 (68)
16 cd07355 HN_L-delphilin-R2_like 50.1 19 0.00042 23.4 2.6 22 32-53 15-36 (80)
17 PRK02539 hypothetical protein; 50.0 18 0.0004 23.6 2.5 20 32-51 20-39 (85)
18 TIGR03009 plancto_dom_2 Planct 49.7 9.1 0.0002 28.0 1.2 12 22-33 71-82 (210)
19 PRK11546 zraP zinc resistance 49.6 18 0.0004 25.3 2.6 19 32-50 43-61 (143)
20 PF11453 DUF2950: Protein of u 49.4 13 0.00028 28.7 2.0 11 26-36 91-101 (271)
21 PRK01631 hypothetical protein; 47.6 22 0.00047 22.8 2.5 20 32-51 19-38 (76)
22 PF06433 Me-amine-dh_H: Methyl 46.8 12 0.00025 29.5 1.4 13 21-33 267-279 (342)
23 PF10892 DUF2688: Protein of u 46.6 16 0.00034 22.7 1.7 14 32-45 44-57 (60)
24 PF06737 Transglycosylas: Tran 46.0 19 0.0004 23.0 2.0 40 8-49 15-67 (77)
25 PRK01546 hypothetical protein; 43.6 27 0.00058 22.5 2.5 20 32-51 21-40 (79)
26 COG0184 RpsO Ribosomal protein 43.2 34 0.00073 22.2 2.9 26 29-54 19-49 (89)
27 TIGR00547 lolA periplasmic cha 42.7 15 0.00033 26.0 1.4 13 22-34 85-97 (204)
28 KOG2515 Mannosyltransferase [C 42.3 9.2 0.0002 32.3 0.2 22 11-33 45-66 (568)
29 PF06226 DUF1007: Protein of u 40.7 15 0.00033 25.9 1.1 9 23-31 42-50 (212)
30 TIGR00811 sit silicon transpor 40.7 6 0.00013 33.2 -1.0 25 28-52 427-452 (545)
31 PF05726 Pirin_C: Pirin C-term 40.7 25 0.00053 22.0 2.0 25 24-53 79-103 (104)
32 cd00730 rubredoxin Rubredoxin; 39.0 15 0.00033 21.3 0.8 11 26-36 9-19 (50)
33 PF00301 Rubredoxin: Rubredoxi 38.9 13 0.00028 21.4 0.4 12 26-37 9-20 (47)
34 PF12202 OSR1_C: Oxidative-str 38.3 23 0.0005 20.1 1.4 14 26-39 25-38 (38)
35 KOG3608 Zn finger proteins [Ge 38.0 7 0.00015 32.1 -1.0 21 49-69 383-403 (467)
36 KOG3043 Predicted hydrolase re 35.4 41 0.00089 25.7 2.7 20 31-50 216-235 (242)
37 PF14206 Cys_rich_CPCC: Cystei 35.1 36 0.00079 21.6 2.1 25 25-50 27-58 (78)
38 PF13801 Metal_resist: Heavy-m 34.2 54 0.0012 19.2 2.7 21 31-51 40-60 (125)
39 cd00353 Ribosomal_S15p_S13e Ri 34.1 67 0.0015 19.8 3.2 25 30-54 14-43 (80)
40 COG1773 Rubredoxin [Energy pro 33.3 19 0.00042 21.7 0.6 11 26-36 11-21 (55)
41 PF12399 BCA_ABC_TP_C: Branche 33.1 30 0.00066 17.3 1.2 17 32-48 5-21 (23)
42 cd07148 ALDH_RL0313 Uncharacte 32.9 86 0.0019 24.1 4.2 34 15-50 2-36 (455)
43 PF11959 DUF3473: Domain of un 32.5 20 0.00043 24.1 0.6 9 25-33 82-90 (133)
44 COG0774 LpxC UDP-3-O-acyl-N-ac 32.1 31 0.00066 27.1 1.7 26 18-45 163-190 (300)
45 PF10851 DUF2652: Protein of u 31.3 84 0.0018 21.7 3.5 40 4-54 15-55 (116)
46 PF05700 BCAS2: Breast carcino 31.1 45 0.00097 23.8 2.3 19 28-46 15-33 (221)
47 PF00312 Ribosomal_S15: Riboso 30.5 86 0.0019 19.3 3.2 26 29-54 14-44 (83)
48 PF00652 Ricin_B_lectin: Ricin 30.1 38 0.00081 19.8 1.5 21 11-32 26-46 (124)
49 PF14974 DUF4511: Domain of un 30.0 55 0.0012 22.0 2.4 26 33-67 19-44 (105)
50 smart00717 SANT SANT SWI3, AD 29.9 78 0.0017 15.5 2.6 33 34-66 5-44 (49)
51 PF13297 Telomere_Sde2_2: Telo 29.7 33 0.00071 21.2 1.2 9 32-40 32-40 (60)
52 smart00831 Cation_ATPase_N Cat 29.7 75 0.0016 17.6 2.6 20 40-59 15-34 (64)
53 PF04591 DUF596: Protein of un 29.5 45 0.00098 21.0 1.8 17 32-50 16-32 (70)
54 PF13964 Kelch_6: Kelch motif 29.1 38 0.00082 17.9 1.3 14 23-36 28-41 (50)
55 cd00161 RICIN Ricin-type beta- 29.1 45 0.00097 19.0 1.7 18 13-30 25-42 (124)
56 PF13415 Kelch_3: Galactose ox 29.0 32 0.00068 18.4 1.0 16 18-34 15-30 (49)
57 KOG1621 1D-myo-inositol-tripho 28.9 30 0.00065 28.6 1.2 14 27-40 291-304 (458)
58 PF11178 DUF2963: Protein of u 28.4 35 0.00075 19.7 1.1 12 23-34 9-20 (51)
59 cd00094 HX Hemopexin-like repe 28.0 29 0.00063 23.6 0.8 16 20-35 116-131 (194)
60 smart00390 GoLoco LGN motif, p 27.9 31 0.00067 18.1 0.8 9 60-68 6-14 (26)
61 PF09252 Feld-I_B: Allergen Fe 27.5 45 0.00097 21.0 1.5 25 32-56 27-51 (67)
62 COG4224 Uncharacterized protei 26.6 78 0.0017 20.5 2.6 19 32-50 20-38 (77)
63 CHL00027 rps15 ribosomal prote 26.5 1.4E+02 0.0031 19.4 3.8 28 27-54 14-46 (90)
64 PF10986 DUF2796: Protein of u 26.3 1.7E+02 0.0036 20.6 4.4 43 3-50 10-56 (168)
65 PF05593 RHS_repeat: RHS Repea 25.8 60 0.0013 17.0 1.7 17 15-31 8-25 (38)
66 PF14304 CSTF_C: Transcription 25.7 66 0.0014 18.8 1.9 20 32-51 24-43 (46)
67 KOG3355 Mitochondrial sulfhydr 25.4 15 0.00033 26.9 -1.0 26 17-42 69-101 (177)
68 KOG2881 Predicted membrane pro 25.2 44 0.00096 26.2 1.5 19 25-44 151-169 (294)
69 TIGR03042 PS_II_psbQ_bact phot 24.6 93 0.002 21.7 2.9 25 30-54 27-51 (142)
70 KOG4631 NADH:ubiquinone oxidor 24.3 15 0.00033 24.8 -1.1 16 11-33 39-54 (100)
71 PF13308 YARHG: YARHG domain 24.2 54 0.0012 20.1 1.5 29 17-46 46-78 (81)
72 COG5397 Uncharacterized conser 23.8 1.1E+02 0.0023 24.7 3.3 29 19-47 39-80 (349)
73 PF13570 PQQ_3: PQQ-like domai 23.8 41 0.0009 17.3 0.8 10 22-31 1-10 (40)
74 PF07985 SRR1: SRR1; InterPro 23.7 1E+02 0.0023 17.7 2.6 20 23-43 35-54 (56)
75 PF14723 SSFA2_C: Sperm-specif 23.4 64 0.0014 23.7 1.9 14 32-45 138-151 (179)
76 PF03842 Silic_transp: Silicon 23.3 15 0.00032 30.7 -1.5 27 26-52 426-453 (512)
77 COG5474 Uncharacterized conser 23.3 78 0.0017 22.9 2.3 26 25-50 45-70 (159)
78 TIGR01686 FkbH FkbH-like domai 23.0 1.1E+02 0.0024 22.4 3.1 39 24-66 141-184 (320)
79 COG3575 Uncharacterized protei 23.0 83 0.0018 23.2 2.5 30 25-54 61-91 (184)
80 KOG3852 Uncharacterized conser 22.3 27 0.00059 28.4 -0.2 34 5-49 176-210 (426)
81 PF15056 NRN1: Neuritin protei 22.0 1E+02 0.0022 20.5 2.5 23 32-54 51-74 (89)
82 PF13524 Glyco_trans_1_2: Glyc 21.5 1.1E+02 0.0024 17.5 2.4 41 22-62 40-90 (92)
83 cd06007 R3H_DEXH_helicase R3H 21.4 1.4E+02 0.0029 17.7 2.8 25 23-48 16-40 (59)
84 PF06955 XET_C: Xyloglucan end 21.1 85 0.0019 17.8 1.8 17 33-49 16-32 (51)
85 PF00128 Alpha-amylase: Alpha 21.0 1.1E+02 0.0024 20.5 2.6 33 12-44 25-61 (316)
86 PF03901 Glyco_transf_22: Alg9 20.9 32 0.0007 25.8 -0.0 12 22-33 41-52 (418)
87 COG1902 NemA NADH:flavin oxido 20.8 71 0.0015 24.9 1.8 32 19-50 104-153 (363)
88 smart00131 KU BPTI/Kunitz fami 20.7 73 0.0016 17.3 1.4 13 23-35 16-28 (53)
89 cd03557 L-arabinose_isomerase 20.7 80 0.0017 25.6 2.2 32 3-34 397-430 (484)
90 TIGR02691 arsC_pI258_fam arsen 20.7 1.6E+02 0.0034 19.1 3.2 28 20-47 90-121 (129)
91 smart00642 Aamy Alpha-amylase 20.4 92 0.002 21.1 2.1 20 27-46 61-81 (166)
92 smart00612 Kelch Kelch domain. 20.4 75 0.0016 15.5 1.4 14 24-37 16-29 (47)
93 COG4096 HsdR Type I site-speci 20.2 60 0.0013 28.9 1.4 20 11-33 106-125 (875)
No 1
>PLN02993 lupeol synthase
Probab=100.00 E-value=6.6e-35 Score=238.47 Aligned_cols=69 Identities=52% Similarity=0.893 Sum_probs=67.0
Q ss_pred CceeeeecCC--CcceeecCCccceeeeeeCCCCCCHHHHHHHHHHHHHHhhcccccCcchhHHhhhhhcC
Q 035253 1 MWKLKIAEGG--NAWLRTLNNHVGRQVWEFDPELGSPEELAKIEKARENFHNHRFEKKQSADLLMRLQRWR 69 (69)
Q Consensus 1 MWkLKiaegg--~p~L~S~Nn~vGRQ~WEFDp~~GtpEEra~VE~aR~~F~~nRf~~k~ssDlLmR~Q~~k 69 (69)
||||||++|| +|||+|+|||||||+||||||+|||||+++||.+|++|+.|||++|||+||||||||+|
T Consensus 1 ~wrl~~~~~~~~~~~l~s~n~~~grq~w~~d~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 71 (763)
T PLN02993 1 MWKLKIGEGNGEDPYLFSSNNFVGRQTWEFDPKAGTPEERAAVEEARRSFLDNRSRVKGCSDLLWRMQFLK 71 (763)
T ss_pred CCceEeCCCCCCCcceecccCcCceeeeEeCCCCCChHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHh
Confidence 9999999975 89999999999999999999999999999999999999999999999999999999864
No 2
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=8e-35 Score=238.01 Aligned_cols=69 Identities=57% Similarity=0.963 Sum_probs=67.0
Q ss_pred CceeeeecCC--CcceeecCCccceeeeeeCCCCCCHHHHHHHHHHHHHHhhcccccCcchhHHhhhhhcC
Q 035253 1 MWKLKIAEGG--NAWLRTLNNHVGRQVWEFDPELGSPEELAKIEKARENFHNHRFEKKQSADLLMRLQRWR 69 (69)
Q Consensus 1 MWkLKiaegg--~p~L~S~Nn~vGRQ~WEFDp~~GtpEEra~VE~aR~~F~~nRf~~k~ssDlLmR~Q~~k 69 (69)
||||||++|| +|||+|+|||||||+|||||++|||||+++||.+|++|+.|||++|||+||||||||+|
T Consensus 1 ~wrl~~~~~~~~~~~l~s~n~~~grq~w~~d~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~d~~~r~~~~~ 71 (759)
T PLN03012 1 MWKLKIAEGNGDDPYLFSTNNFAGRQTWEFDPDAGSPEELAAVEEARRIFYDDRFHVKASSDLIWRMQFLK 71 (759)
T ss_pred CCceEeCCCCCCCcceecccccCceeeeEeCCCCCChHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHh
Confidence 9999999975 89999999999999999999999999999999999999999999999999999999865
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.94 E-value=2.2e-28 Score=200.93 Aligned_cols=69 Identities=57% Similarity=0.912 Sum_probs=66.8
Q ss_pred CceeeeecCC--CcceeecCCccceeeeeeCCCCCCHHHHHHHHHHHHHHhhcccccCcchhHHhhhhhcC
Q 035253 1 MWKLKIAEGG--NAWLRTLNNHVGRQVWEFDPELGSPEELAKIEKARENFHNHRFEKKQSADLLMRLQRWR 69 (69)
Q Consensus 1 MWkLKiaegg--~p~L~S~Nn~vGRQ~WEFDp~~GtpEEra~VE~aR~~F~~nRf~~k~ssDlLmR~Q~~k 69 (69)
||||||++|. +|+|+|||||||||+||||+++|||||+|+||+||++|..||+..|+|+||+|||||++
T Consensus 1 mw~l~~~~~~~~~~~l~~tn~~~grq~W~~d~~~~~~e~~~~v~~~r~~f~~~~~~~k~s~dl~~r~qf~~ 71 (760)
T KOG0497|consen 1 MWRLKIGEGAGEDPHLFTTNNFVGRQTWEFDADAGGPEELAYVEEARANFSDNRSREKASLDLLWRMQFLR 71 (760)
T ss_pred CcceeeccccCCCCcccccccccCceeEEecCCCCCcchHHHHHHHHHhcCCcchhHHHhcccchhhhhhh
Confidence 9999999974 89999999999999999999999999999999999999999999999999999999864
No 4
>smart00120 HX Hemopexin-like repeats. Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).
Probab=81.95 E-value=0.86 Score=23.85 Aligned_cols=13 Identities=38% Similarity=0.968 Sum_probs=10.9
Q ss_pred ccceeeeeeCCCC
Q 035253 20 HVGRQVWEFDPEL 32 (69)
Q Consensus 20 ~vGRQ~WEFDp~~ 32 (69)
|.|+|+|.||+..
T Consensus 15 Fkg~~yw~~~~~~ 27 (45)
T smart00120 15 FKGDKYWRFDPKR 27 (45)
T ss_pred EeCCEEEEEcCCc
Confidence 4699999999863
No 5
>PF00045 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexin (3.2.1.35 from EC) is a serum glycoprotein that binds haem and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation []. Hemopexin prevents haem-mediated oxidative stress. Structurally hemopexin consists of two similar halves of approximately two hundred amino acid residues connected by a histidine-rich hinge region. Each half is itself formed by the repetition of a basic unit of some 35 to 45 residues. Hemopexin-like domains have been found in two other types of proteins, vitronectin [], a cell adhesion and spreading factor found in plasma and tissues, and matrixins MMP-1, MMP-2, MMP-3, MMP-9, MMP-10, MMP-11, MMP-12, MMP-14, MMP-15 and MMP-16, members of the matrix metalloproteinase family that cleave extracellular matrix constituents []. These zinc endopeptidases, which belong to MEROPS peptidase subfamily M10A, have a single hemopexin-like domain in their C-terminal section. It is suggested that the hemopexin domain facilitates binding to a variety of molecules and proteins, for example the HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs). This entry represents the repeat found in hempoxein and related domains.; PDB: 1SU3_B 2CLT_B 3V6N_B 3C7X_A 1GXD_A 1RTG_A 1CK7_A 1GEN_A 1ITV_A 2JXY_A ....
Probab=76.88 E-value=1.3 Score=23.90 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=10.5
Q ss_pred ccceeeeeeCCC
Q 035253 20 HVGRQVWEFDPE 31 (69)
Q Consensus 20 ~vGRQ~WEFDp~ 31 (69)
|.|+|+|.||..
T Consensus 15 Fkg~~ywr~~~~ 26 (45)
T PF00045_consen 15 FKGNQYWRFDES 26 (45)
T ss_dssp EETTEEEEEETT
T ss_pred EECCEEEEEcCc
Confidence 569999999987
No 6
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=76.68 E-value=1.9 Score=27.73 Aligned_cols=29 Identities=31% Similarity=0.575 Sum_probs=22.7
Q ss_pred CCcceeecCCccceeeeeeCCCCCCHHHHHHHHH
Q 035253 10 GNAWLRTLNNHVGRQVWEFDPELGSPEELAKIEK 43 (69)
Q Consensus 10 g~p~L~S~Nn~vGRQ~WEFDp~~GtpEEra~VE~ 43 (69)
|+|.++- +||.-| -+||++.+||...|-+
T Consensus 34 Gn~~vF~----~~rkPW-I~Pd~~~ve~i~~vi~ 62 (74)
T COG3592 34 GNPKVFN----LGRKPW-IMPDAVDVEEIVKVID 62 (74)
T ss_pred CCHhhcc----cCCCCc-cCCCCCCHHHHHHHHH
Confidence 4666654 799999 5999999999877644
No 7
>COG2173 DdpX D-alanyl-D-alanine dipeptidase [Cell envelope biogenesis, outer membrane]
Probab=75.86 E-value=1 Score=33.72 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=16.1
Q ss_pred ecCCccceeeeeeCCC-CCCH
Q 035253 16 TLNNHVGRQVWEFDPE-LGSP 35 (69)
Q Consensus 16 S~Nn~vGRQ~WEFDp~-~Gtp 35 (69)
+.|||.||++|++++- +-+|
T Consensus 51 ~a~nf~grp~~~~~~~c~l~~ 71 (211)
T COG2173 51 GANNFTGRPIYEIGARCLLHP 71 (211)
T ss_pred hccccccccccccCchheecH
Confidence 7899999999999865 3444
No 8
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=70.67 E-value=3 Score=21.85 Aligned_cols=23 Identities=22% Similarity=0.644 Sum_probs=19.9
Q ss_pred CcceeecCCccceeeeeeCCCCC
Q 035253 11 NAWLRTLNNHVGRQVWEFDPELG 33 (69)
Q Consensus 11 ~p~L~S~Nn~vGRQ~WEFDp~~G 33 (69)
+-.|+..|---|-..|+|++...
T Consensus 9 ~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 9 DGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp TSEEEEEETTTTSEEEEEESSSG
T ss_pred CCEEEEEECCCCCEEEeeeCCCC
Confidence 66899999999999999997753
No 9
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=69.64 E-value=3.5 Score=28.04 Aligned_cols=25 Identities=48% Similarity=0.842 Sum_probs=18.2
Q ss_pred eecCCccceeeeeeCCCCCCHHHHHH
Q 035253 15 RTLNNHVGRQVWEFDPELGSPEELAK 40 (69)
Q Consensus 15 ~S~Nn~vGRQ~WEFDp~~GtpEEra~ 40 (69)
..=.+.-||.+|||.-++ ||||+..
T Consensus 88 ~~Y~~~e~R~v~~y~LnL-s~ee~~~ 112 (176)
T PF13387_consen 88 REYSNVEGRDVWEYPLNL-SPEEKQR 112 (176)
T ss_pred HHHhhhhCCcEEEEEeeC-CHHHHHH
Confidence 333455789999999985 6887654
No 10
>PF07477 Glyco_hydro_67C: Glycosyl hydrolase family 67 C-terminus; InterPro: IPR011099 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the C-terminal region of alpha-glucuronidase, which is mainly alpha-helical. It wraps around the catalytic domain (IPR011100 from INTERPRO), making additional interactions both with the N-terminal domain (IPR005154 from INTERPRO) of its parent monomer and also forming the majority of the dimer-surface with the equivalent C-terminal domain of the other monomer of the dimer [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=66.34 E-value=2.3 Score=31.94 Aligned_cols=40 Identities=43% Similarity=0.689 Sum_probs=26.9
Q ss_pred cceeeeeeCCCCCCHHHHHHHHHHHHHHhhcccccCcchhHHhh
Q 035253 21 VGRQVWEFDPELGSPEELAKIEKARENFHNHRFEKKQSADLLMR 64 (69)
Q Consensus 21 vGRQ~WEFDp~~GtpEEra~VE~aR~~F~~nRf~~k~ssDlLmR 64 (69)
-||=.| ||++ |+|++|+ |=+|..|..+---+..=.++||+
T Consensus 13 fGRLAW--dp~l-sse~Ia~-EW~~~TF~~d~~~~~~v~~mm~~ 52 (225)
T PF07477_consen 13 FGRLAW--DPDL-SSEEIAD-EWIRMTFGNDPKVVETVVDMMMR 52 (225)
T ss_dssp HHHHHH---TTS--HHHHHH-HHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHhhc--CCCC-CHHHHHH-HHHHhhcCCCHHHHHHHHHHHHH
Confidence 389999 9996 6888765 88999998876556667777764
No 11
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=63.57 E-value=7.4 Score=18.91 Aligned_cols=19 Identities=21% Similarity=0.616 Sum_probs=15.9
Q ss_pred CcceeecCCccceeeeeeC
Q 035253 11 NAWLRTLNNHVGRQVWEFD 29 (69)
Q Consensus 11 ~p~L~S~Nn~vGRQ~WEFD 29 (69)
+-.|...|-..|...|+|+
T Consensus 15 ~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 15 DGTLYALDAKTGEILWTYK 33 (33)
T ss_pred CCEEEEEEcccCcEEEEcC
Confidence 5678888888899999875
No 12
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=60.79 E-value=4.5 Score=23.30 Aligned_cols=16 Identities=25% Similarity=0.721 Sum_probs=11.0
Q ss_pred CcceeecCCccceeee
Q 035253 11 NAWLRTLNNHVGRQVW 26 (69)
Q Consensus 11 ~p~L~S~Nn~vGRQ~W 26 (69)
.|-+.|+.++-||-+|
T Consensus 14 v~gM~sl~D~~gRTiW 29 (39)
T PF09292_consen 14 VPGMKSLRDRNGRTIW 29 (39)
T ss_dssp -TT-EEEE-TTS-EEE
T ss_pred ccccccccccCCCEEE
Confidence 4668899999999999
No 13
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=60.62 E-value=7 Score=28.15 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=22.3
Q ss_pred eecCCccceeeeeeCCC--CCCHHHHHHHHHHHHHHh
Q 035253 15 RTLNNHVGRQVWEFDPE--LGSPEELAKIEKARENFH 49 (69)
Q Consensus 15 ~S~Nn~vGRQ~WEFDp~--~GtpEEra~VE~aR~~F~ 49 (69)
.|+|||+|+.+ |+-. ..+++--..+.+|.+...
T Consensus 24 at~~NF~g~~i--Y~~~~c~l~~~aA~aL~~a~~~l~ 58 (184)
T PRK10178 24 ATADNLTGKPI--YREARCLLHKDAEAALRKAVSIAQ 58 (184)
T ss_pred ccCCCcCCCcc--ccCCeEEECHHHHHHHHHHHHHHH
Confidence 48999999999 5432 466766555666665553
No 14
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=54.37 E-value=16 Score=22.67 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 035253 32 LGSPEELAKIEKARENFHNH 51 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~n 51 (69)
.-|+||.++-+.+|++|-.+
T Consensus 18 gLT~eE~~Eq~~LR~eYl~~ 37 (65)
T PF05979_consen 18 GLTEEEKAEQAELRQEYLQN 37 (65)
T ss_dssp ---HHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999764
No 15
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=52.26 E-value=19 Score=22.82 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccc
Q 035253 30 PELGSPEELAKIEKARENFHNHRF 53 (69)
Q Consensus 30 p~~GtpEEra~VE~aR~~F~~nRf 53 (69)
|+| ||+|+++.-+.|-+|...--
T Consensus 27 P~a-t~~~l~~lve~RsdFAS~CC 49 (68)
T PF09164_consen 27 PDA-TPTELKELVEKRSDFASKCC 49 (68)
T ss_dssp TTS--HHHHHHHHHHHHHHHHHHS
T ss_pred CCC-CHHHHHHHHHHHhhHHHHhh
Confidence 665 89999999999999987543
No 16
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=50.12 E-value=19 Score=23.44 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHhhccc
Q 035253 32 LGSPEELAKIEKARENFHNHRF 53 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~nRf 53 (69)
+-||.||..|-+|=++|..+|-
T Consensus 15 lLt~~ER~~i~qaL~~y~~~Rn 36 (80)
T cd07355 15 LLTPPERYGIKKALEDYFQHRN 36 (80)
T ss_pred hCCHHHHHHHHHHHHHHHHhcc
Confidence 4699999999999999999884
No 17
>PRK02539 hypothetical protein; Provisional
Probab=49.98 E-value=18 Score=23.60 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 035253 32 LGSPEELAKIEKARENFHNH 51 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~n 51 (69)
.-|+||.++-+.+|+.|-++
T Consensus 20 gLT~eEk~Eq~~LR~eYl~~ 39 (85)
T PRK02539 20 GLTGEEKVEQAKLREEYIEG 39 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 45999999999999999764
No 18
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=49.71 E-value=9.1 Score=28.00 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=10.4
Q ss_pred ceeeeeeCCCCC
Q 035253 22 GRQVWEFDPELG 33 (69)
Q Consensus 22 GRQ~WEFDp~~G 33 (69)
|-.+|.|||++-
T Consensus 71 Gk~lW~YDpdle 82 (210)
T TIGR03009 71 GTAVYAYNGLAK 82 (210)
T ss_pred CCEEEEECCChh
Confidence 889999999853
No 19
>PRK11546 zraP zinc resistance protein; Provisional
Probab=49.59 E-value=18 Score=25.27 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 035253 32 LGSPEELAKIEKARENFHN 50 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~ 50 (69)
.-|||++++++..+++|..
T Consensus 43 ~LT~EQQa~~q~I~~~f~~ 61 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYA 61 (143)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 3699999999999999975
No 20
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=49.37 E-value=13 Score=28.69 Aligned_cols=11 Identities=45% Similarity=1.051 Sum_probs=9.7
Q ss_pred eeeCCCCCCHH
Q 035253 26 WEFDPELGSPE 36 (69)
Q Consensus 26 WEFDp~~GtpE 36 (69)
|.||+.+|..|
T Consensus 91 W~FD~~aG~~E 101 (271)
T PF11453_consen 91 WRFDTAAGREE 101 (271)
T ss_pred ceecHHHHHHH
Confidence 99999999666
No 21
>PRK01631 hypothetical protein; Provisional
Probab=47.56 E-value=22 Score=22.81 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 035253 32 LGSPEELAKIEKARENFHNH 51 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~n 51 (69)
.-|+||.++-..+|+.|-.+
T Consensus 19 gLT~eE~~Eq~~LR~eYl~~ 38 (76)
T PRK01631 19 GLTVDEKQEQQMLRQNYTQT 38 (76)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 45999999999999999876
No 22
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=46.80 E-value=12 Score=29.54 Aligned_cols=13 Identities=31% Similarity=0.718 Sum_probs=10.9
Q ss_pred cceeeeeeCCCCC
Q 035253 21 VGRQVWEFDPELG 33 (69)
Q Consensus 21 vGRQ~WEFDp~~G 33 (69)
-|+++|+||+..+
T Consensus 267 pgteVWv~D~~t~ 279 (342)
T PF06433_consen 267 PGTEVWVYDLKTH 279 (342)
T ss_dssp -EEEEEEEETTTT
T ss_pred CceEEEEEECCCC
Confidence 4899999999875
No 23
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=46.61 E-value=16 Score=22.74 Aligned_cols=14 Identities=36% Similarity=0.275 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHH
Q 035253 32 LGSPEELAKIEKAR 45 (69)
Q Consensus 32 ~GtpEEra~VE~aR 45 (69)
--||||..+++++-
T Consensus 44 CitpEE~~~I~e~~ 57 (60)
T PF10892_consen 44 CITPEEDREILEAT 57 (60)
T ss_pred cCCHHHHHHHHHHH
Confidence 35899999999863
No 24
>PF06737 Transglycosylas: Transglycosylase-like domain; InterPro: IPR010618 This family of proteins is very likely to act as transglycosylase enzymes related to IPR001916 from INTERPRO and IPR008258 from INTERPRO. These other families are weakly matched by this family, and include the known active site residues.; GO: 0005576 extracellular region; PDB: 1XSF_A 3EO5_A.
Probab=45.96 E-value=19 Score=23.05 Aligned_cols=40 Identities=30% Similarity=0.505 Sum_probs=23.5
Q ss_pred cCCCcceeecCCccce-----eeee------e--CCCCCCHHHHHHHHHHHHHHh
Q 035253 8 EGGNAWLRTLNNHVGR-----QVWE------F--DPELGSPEELAKIEKARENFH 49 (69)
Q Consensus 8 egg~p~L~S~Nn~vGR-----Q~WE------F--Dp~~GtpEEra~VE~aR~~F~ 49 (69)
.||++-+-|.|++-|- .+|. | .|+..|++| |+..|.+-+.
T Consensus 15 SgGn~~~ntgnG~yGg~Qf~~sTW~a~Gg~~yap~~~~As~~e--Qi~~A~~l~~ 67 (77)
T PF06737_consen 15 SGGNWAINTGNGYYGGLQFSQSTWRAYGGSGYAPRPDQASRAE--QIAVAEKLYA 67 (77)
T ss_dssp CTT-TT---SSSBBTTTTBBHHHHHHTTGGGT-SSCCCS-HHH--HHHHHHHHHH
T ss_pred cCCCCccCCCCCccceeccCHHHHHHhCCCcCCCChhhCCHHH--HHHHHHHHHH
Confidence 3568888889988874 3565 4 678889998 5555655443
No 25
>PRK01546 hypothetical protein; Provisional
Probab=43.63 E-value=27 Score=22.46 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 035253 32 LGSPEELAKIEKARENFHNH 51 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~n 51 (69)
.-|+||.++-+.+|+.|-++
T Consensus 21 gLT~eEk~Eq~~LR~eYl~~ 40 (79)
T PRK01546 21 GLTEEEQRERQSLREQYLKG 40 (79)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999998764
No 26
>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]
Probab=43.21 E-value=34 Score=22.20 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=20.1
Q ss_pred CCCCCCHHHH-----HHHHHHHHHHhhcccc
Q 035253 29 DPELGSPEEL-----AKIEKARENFHNHRFE 54 (69)
Q Consensus 29 Dp~~GtpEEr-----a~VE~aR~~F~~nRf~ 54 (69)
..++||||+. +.+.+++.+|..|+-.
T Consensus 19 ~~dtgs~evq~a~Lt~ri~~L~~Hlk~hkKD 49 (89)
T COG0184 19 EVDTGSGEVQLALLTERINNLTEHLKEHKKD 49 (89)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 5678888876 4678889999988744
No 27
>TIGR00547 lolA periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself.
Probab=42.66 E-value=15 Score=25.99 Aligned_cols=13 Identities=31% Similarity=0.925 Sum_probs=10.9
Q ss_pred ceeeeeeCCCCCC
Q 035253 22 GRQVWEFDPELGS 34 (69)
Q Consensus 22 GRQ~WEFDp~~Gt 34 (69)
|..+|-|||+.-.
T Consensus 85 G~~vw~Ydp~leQ 97 (204)
T TIGR00547 85 GKTLWFYDPFVEQ 97 (204)
T ss_pred CCEEEEECCCCce
Confidence 8899999998543
No 28
>KOG2515 consensus Mannosyltransferase [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.32 E-value=9.2 Score=32.26 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=15.1
Q ss_pred CcceeecCCccceeeeeeCCCCC
Q 035253 11 NAWLRTLNNHVGRQVWEFDPELG 33 (69)
Q Consensus 11 ~p~L~S~Nn~vGRQ~WEFDp~~G 33 (69)
+|.=+=.+++ |=|||||-|+.+
T Consensus 45 EPLHyllyG~-GfQTWEYSP~ya 66 (568)
T KOG2515|consen 45 EPLHYLLYGE-GFQTWEYSPEYA 66 (568)
T ss_pred hhhhhHhhcc-cccceeeCchhH
Confidence 3433344555 999999999864
No 29
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=40.71 E-value=15 Score=25.95 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=7.7
Q ss_pred eeeeeeCCC
Q 035253 23 RQVWEFDPE 31 (69)
Q Consensus 23 RQ~WEFDp~ 31 (69)
|++|.||+-
T Consensus 42 ~~~W~fDe~ 50 (212)
T PF06226_consen 42 RMTWTFDEF 50 (212)
T ss_pred EEEEEeCch
Confidence 799999974
No 30
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=40.71 E-value=6 Score=33.15 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=20.4
Q ss_pred eCCC-CCCHHHHHHHHHHHHHHhhcc
Q 035253 28 FDPE-LGSPEELAKIEKARENFHNHR 52 (69)
Q Consensus 28 FDp~-~GtpEEra~VE~aR~~F~~nR 52 (69)
+|.- -||||||++-+++-..|...|
T Consensus 427 ~devyvgt~eer~~~~~~d~~~~~~~ 452 (545)
T TIGR00811 427 LDEVYVGTAEERAAGEKPDHSVHAGR 452 (545)
T ss_pred cceeEeCCHHHhhhccCCcccccccc
Confidence 4555 499999999999988888766
No 31
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=40.66 E-value=25 Score=21.97 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=17.3
Q ss_pred eeeeeCCCCCCHHHHHHHHHHHHHHhhccc
Q 035253 24 QVWEFDPELGSPEELAKIEKARENFHNHRF 53 (69)
Q Consensus 24 Q~WEFDp~~GtpEEra~VE~aR~~F~~nRf 53 (69)
|.|=|- ..|.| +|++|.++|.+.||
T Consensus 79 ~~GpFV--mnt~e---eI~qA~~dy~~g~f 103 (104)
T PF05726_consen 79 QYGPFV--MNTRE---EIEQAFEDYQNGKF 103 (104)
T ss_dssp EETTEE--ESSHH---HHHHHHHHHHCT-T
T ss_pred EECCcc--cCCHH---HHHHHHHHHHhCCC
Confidence 455555 34555 68899999999887
No 32
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=39.04 E-value=15 Score=21.32 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=8.2
Q ss_pred eeeCCCCCCHH
Q 035253 26 WEFDPELGSPE 36 (69)
Q Consensus 26 WEFDp~~GtpE 36 (69)
|+|||+.|.|+
T Consensus 9 yiYd~~~Gd~~ 19 (50)
T cd00730 9 YIYDPAEGDPD 19 (50)
T ss_pred eEECCCCCCcc
Confidence 88999876553
No 33
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=38.88 E-value=13 Score=21.42 Aligned_cols=12 Identities=50% Similarity=1.118 Sum_probs=9.8
Q ss_pred eeeCCCCCCHHH
Q 035253 26 WEFDPELGSPEE 37 (69)
Q Consensus 26 WEFDp~~GtpEE 37 (69)
|.|||..|.|++
T Consensus 9 yvYd~~~Gd~~~ 20 (47)
T PF00301_consen 9 YVYDPEKGDPEN 20 (47)
T ss_dssp BEEETTTBBGGG
T ss_pred EEEcCCcCCccc
Confidence 889999987754
No 34
>PF12202 OSR1_C: Oxidative-stress-responsive kinase 1 C terminal; InterPro: IPR024678 Oxidative-stress-responsive kinase 1 (OSR1) is involved in the signalling cascade which activates Na/K/2Cl co-transporter during osmotic stress. This entry represents the CCT domain found in OSR1, STE20/SPS1-related kinase and in WNK activators []. This domain is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue F that may be functionally important. ; PDB: 2V3S_A 2LRU_A.
Probab=38.27 E-value=23 Score=20.10 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=10.3
Q ss_pred eeeCCCCCCHHHHH
Q 035253 26 WEFDPELGSPEELA 39 (69)
Q Consensus 26 WEFDp~~GtpEEra 39 (69)
.+||+...|||+.|
T Consensus 25 F~F~~~~D~~e~VA 38 (38)
T PF12202_consen 25 FEFDLGKDTAEEVA 38 (38)
T ss_dssp EEEETTT--HHHHH
T ss_pred EEEecCCCcccccC
Confidence 68999999999865
No 35
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=38.04 E-value=7 Score=32.11 Aligned_cols=21 Identities=43% Similarity=0.495 Sum_probs=17.6
Q ss_pred hhcccccCcchhHHhhhhhcC
Q 035253 49 HNHRFEKKQSADLLMRLQRWR 69 (69)
Q Consensus 49 ~~nRf~~k~ssDlLmR~Q~~k 69 (69)
---||..|...|-+||+|..|
T Consensus 383 Gh~RFtYk~~edG~mRLqt~r 403 (467)
T KOG3608|consen 383 GHKRFTYKVDEDGFMRLQTTR 403 (467)
T ss_pred CCCceeeeeccCceeeeeeee
Confidence 346899999999999999753
No 36
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=35.37 E-value=41 Score=25.71 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 035253 31 ELGSPEELAKIEKARENFHN 50 (69)
Q Consensus 31 ~~GtpEEra~VE~aR~~F~~ 50 (69)
+..+||.+..+|+|+++|.+
T Consensus 216 ~~~~Ped~~~~eea~~~~~~ 235 (242)
T KOG3043|consen 216 NISSPEDKKAAEEAYQRFIS 235 (242)
T ss_pred CCCChhHHHHHHHHHHHHHH
Confidence 45699999999999999875
No 37
>PF14206 Cys_rich_CPCC: Cysteine-rich CPCC
Probab=35.13 E-value=36 Score=21.56 Aligned_cols=25 Identities=32% Similarity=0.617 Sum_probs=17.6
Q ss_pred eeeeCCC-------CCCHHHHHHHHHHHHHHhh
Q 035253 25 VWEFDPE-------LGSPEELAKIEKARENFHN 50 (69)
Q Consensus 25 ~WEFDp~-------~GtpEEra~VE~aR~~F~~ 50 (69)
.||.|+- .|.|- .--+.+||++|.+
T Consensus 27 ~WEdD~~q~~~pd~~~G~N-~~SL~eAr~ny~~ 58 (78)
T PF14206_consen 27 FWEDDGVQLRDPDYYGGAN-HMSLNEARENYKK 58 (78)
T ss_pred CcccCCccccCCcccCCCC-HHHHHHHHHHHHH
Confidence 5888763 23333 6678999999986
No 38
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=34.20 E-value=54 Score=19.23 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhc
Q 035253 31 ELGSPEELAKIEKARENFHNH 51 (69)
Q Consensus 31 ~~GtpEEra~VE~aR~~F~~n 51 (69)
-.-|||+++++...+.+|...
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~ 60 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQE 60 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 346999999999999988764
No 39
>cd00353 Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.
Probab=34.07 E-value=67 Score=19.76 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=18.4
Q ss_pred CCCCCHHHHH-----HHHHHHHHHhhcccc
Q 035253 30 PELGSPEELA-----KIEKARENFHNHRFE 54 (69)
Q Consensus 30 p~~GtpEEra-----~VE~aR~~F~~nRf~ 54 (69)
.|.|+||... .|..++.++..|+-.
T Consensus 14 ~DtGs~evQia~LT~rI~~L~~Hl~~~~KD 43 (80)
T cd00353 14 GDTGSPEVQLALLTERIVNLTEHLEKNKKD 43 (80)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3689999874 577778888877644
No 40
>COG1773 Rubredoxin [Energy production and conversion]
Probab=33.29 E-value=19 Score=21.72 Aligned_cols=11 Identities=45% Similarity=1.096 Sum_probs=8.6
Q ss_pred eeeCCCCCCHH
Q 035253 26 WEFDPELGSPE 36 (69)
Q Consensus 26 WEFDp~~GtpE 36 (69)
|.|||+.|-|+
T Consensus 11 ~vYd~e~Gdp~ 21 (55)
T COG1773 11 YVYDPEKGDPR 21 (55)
T ss_pred eEeccccCCcc
Confidence 88999877654
No 41
>PF12399 BCA_ABC_TP_C: Branched-chain amino acid ATP-binding cassette transporter
Probab=33.10 E-value=30 Score=17.34 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHHHHH
Q 035253 32 LGSPEELAKIEKARENF 48 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F 48 (69)
.|||+|...=+++++.|
T Consensus 5 ~G~p~~i~~n~~V~~aY 21 (23)
T PF12399_consen 5 EGTPEEIRANPEVREAY 21 (23)
T ss_pred EcCHHHHhcCHHHHHhh
Confidence 48999987666666554
No 42
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=32.91 E-value=86 Score=24.15 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=25.4
Q ss_pred eecCCccceeeeeeCCCCCCHHHH-HHHHHHHHHHhh
Q 035253 15 RTLNNHVGRQVWEFDPELGSPEEL-AKIEKARENFHN 50 (69)
Q Consensus 15 ~S~Nn~vGRQ~WEFDp~~GtpEEr-a~VE~aR~~F~~ 50 (69)
.+.|-.-|.-++++- ..|++|. +.|+.||+.|..
T Consensus 2 ~~~~P~t~~~i~~~~--~~~~~~v~~av~~A~~a~~~ 36 (455)
T cd07148 2 EVVNPFDLKPIGEVP--TVDWAAIDKALDTAHALFLD 36 (455)
T ss_pred CccCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHhh
Confidence 355777788888876 4466665 679999999975
No 43
>PF11959 DUF3473: Domain of unknown function (DUF3473); InterPro: IPR022560 This domain, found in bacteria and archaea, is functionally uncharacterised. It is about 130 amino acids in length and is found C-terminal to PF01522 from PFAM. It contains two completely conserved residues (P and H) that may be functionally important.
Probab=32.49 E-value=20 Score=24.11 Aligned_cols=9 Identities=56% Similarity=1.287 Sum_probs=7.0
Q ss_pred eeeeCCCCC
Q 035253 25 VWEFDPELG 33 (69)
Q Consensus 25 ~WEFDp~~G 33 (69)
=|||||+.-
T Consensus 82 PwE~dp~qp 90 (133)
T PF11959_consen 82 PWEFDPDQP 90 (133)
T ss_pred ceecCCCCc
Confidence 499999853
No 44
>COG0774 LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]
Probab=32.14 E-value=31 Score=27.14 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=16.6
Q ss_pred CCccce--eeeeeCCCCCCHHHHHHHHHHH
Q 035253 18 NNHVGR--QVWEFDPELGSPEELAKIEKAR 45 (69)
Q Consensus 18 Nn~vGR--Q~WEFDp~~GtpEEra~VE~aR 45 (69)
+..+|| |.|+||-..-+- +.+|-.||
T Consensus 163 ~p~Ig~~~q~~~~~~~~~sf--~~eIa~AR 190 (300)
T COG0774 163 HPAIGRQWQSFEFDFSAESF--RKEIARAR 190 (300)
T ss_pred CcccCCcceeEEEecchHHH--HHHhhhhh
Confidence 446999 999999763222 23455554
No 45
>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function.
Probab=31.28 E-value=84 Score=21.65 Aligned_cols=40 Identities=33% Similarity=0.526 Sum_probs=25.9
Q ss_pred eeeec-CCCcceeecCCccceeeeeeCCCCCCHHHHHHHHHHHHHHhhcccc
Q 035253 4 LKIAE-GGNAWLRTLNNHVGRQVWEFDPELGSPEELAKIEKARENFHNHRFE 54 (69)
Q Consensus 4 LKiae-gg~p~L~S~Nn~vGRQ~WEFDp~~GtpEEra~VE~aR~~F~~nRf~ 54 (69)
||||| .||.-|+ |-|+.+. +.+=..+++..|+.|...|-+
T Consensus 15 l~lseiEGDAilF----------y~~~~~~-~~~v~~q~~~M~~aF~~~~~~ 55 (116)
T PF10851_consen 15 LKLSEIEGDAILF----------YKYGKDT-SVEVCRQCERMRRAFHQRREQ 55 (116)
T ss_pred cEEEEecccEEEE----------EcCCCCc-cHHHHHHHHHHHHHHHHHHHH
Confidence 56766 3565553 5555443 344557999999999887633
No 46
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=31.07 E-value=45 Score=23.79 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=15.1
Q ss_pred eCCCCCCHHHHHHHHHHHH
Q 035253 28 FDPELGSPEELAKIEKARE 46 (69)
Q Consensus 28 FDp~~GtpEEra~VE~aR~ 46 (69)
+|++.+||+++++|++.=.
T Consensus 15 iD~~~~~~~~~~~a~~lI~ 33 (221)
T PF05700_consen 15 IDPDYDTPEERQAAEALIE 33 (221)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 5888889999998877643
No 47
>PF00312 Ribosomal_S15: Ribosomal protein S15; InterPro: IPR000589 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S15 is one of the proteins from the small ribosomal subunit. In Escherichia coli, this protein binds to 16S ribosomal RNA and functions at early steps in ribosome assembly. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ,], groups bacterial and plant chloroplast S15; archaeal Haloarcula marismortui HmaS15 (HS11); yeast mitochondrial S28; and mammalian, yeast, Brugia pahangi and Wuchereria bancrofti S13. S15 is a protein of 80 to 250 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1YSH_E 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 1S1H_O 3MR8_O 3D5C_O 3MS0_O ....
Probab=30.52 E-value=86 Score=19.35 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=19.4
Q ss_pred CCCCCCHHHHH-----HHHHHHHHHhhcccc
Q 035253 29 DPELGSPEELA-----KIEKARENFHNHRFE 54 (69)
Q Consensus 29 Dp~~GtpEEra-----~VE~aR~~F~~nRf~ 54 (69)
+.|.|+||+.. .|..++++|..|+-.
T Consensus 14 ~~dtgs~evqia~LT~rI~~L~~Hl~~~kkD 44 (83)
T PF00312_consen 14 PNDTGSPEVQIAILTERIRNLQEHLKKNKKD 44 (83)
T ss_dssp TTSSSSHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45689998874 577888888887644
No 48
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=30.12 E-value=38 Score=19.83 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=14.7
Q ss_pred CcceeecCCccceeeeeeCCCC
Q 035253 11 NAWLRTLNNHVGRQVWEFDPEL 32 (69)
Q Consensus 11 ~p~L~S~Nn~vGRQ~WEFDp~~ 32 (69)
...|...++ ...|.|.|+++.
T Consensus 26 ~v~l~~c~~-~~~Q~w~~~~~~ 46 (124)
T PF00652_consen 26 PVVLYPCDG-SDNQLWRFDPDG 46 (124)
T ss_dssp BEEEEE--S-SGGGEEEEETTS
T ss_pred EEEEEECCC-CCceeEEEcCCC
Confidence 346888888 566999999883
No 49
>PF14974 DUF4511: Domain of unknown function (DUF4511)
Probab=30.04 E-value=55 Score=21.99 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHHhhcccccCcchhHHhhhhh
Q 035253 33 GSPEELAKIEKARENFHNHRFEKKQSADLLMRLQR 67 (69)
Q Consensus 33 GtpEEra~VE~aR~~F~~nRf~~k~ssDlLmR~Q~ 67 (69)
.+||-.+.+++|+.+ .+.|+++.||+
T Consensus 19 ~~peN~~kl~eAk~~---------agndm~k~mq~ 44 (105)
T PF14974_consen 19 NQPENAAKLEEAKAN---------AGNDMLKMMQF 44 (105)
T ss_pred cCchHHHHHHHHHHh---------ccchHHHHHHH
Confidence 578888899998864 34899999997
No 50
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=29.90 E-value=78 Score=15.53 Aligned_cols=33 Identities=9% Similarity=0.143 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHHhhccc-------ccCcchhHHhhhh
Q 035253 34 SPEELAKIEKARENFHNHRF-------EKKQSADLLMRLQ 66 (69)
Q Consensus 34 tpEEra~VE~aR~~F~~nRf-------~~k~ssDlLmR~Q 66 (69)
|+||...+..+-..|-.+++ ..|...|+..|+.
T Consensus 5 t~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~ 44 (49)
T smart00717 5 TEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWN 44 (49)
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 78898888888888874333 2355556555543
No 51
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=29.74 E-value=33 Score=21.16 Aligned_cols=9 Identities=33% Similarity=0.242 Sum_probs=7.5
Q ss_pred CCCHHHHHH
Q 035253 32 LGSPEELAK 40 (69)
Q Consensus 32 ~GtpEEra~ 40 (69)
.||++|||+
T Consensus 32 GGTl~ERA~ 40 (60)
T PF13297_consen 32 GGTLQERAA 40 (60)
T ss_pred CCCHHHHHH
Confidence 489999986
No 52
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=29.71 E-value=75 Score=17.61 Aligned_cols=20 Identities=5% Similarity=0.167 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhcccccCcch
Q 035253 40 KIEKARENFHNHRFEKKQSA 59 (69)
Q Consensus 40 ~VE~aR~~F~~nRf~~k~ss 59 (69)
+|++-|+.|-.|....+.+.
T Consensus 15 ~v~~r~~~~G~N~l~~~~~~ 34 (64)
T smart00831 15 EAARRLERYGPNELPPPKKR 34 (64)
T ss_pred HHHHHHHHhCCCCCCCCCCC
Confidence 69999999999998876543
No 53
>PF04591 DUF596: Protein of unknown function, DUF596; InterPro: IPR007670 This family contains several uncharacterised proteins.; PDB: 2O5H_B.
Probab=29.47 E-value=45 Score=21.04 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 035253 32 LGSPEELAKIEKARENFHN 50 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~ 50 (69)
.||+|| +||--|+.|-.
T Consensus 16 ~Gt~eE--qve~fr~~fP~ 32 (70)
T PF04591_consen 16 EGTTEE--QVEMFRKSFPA 32 (70)
T ss_dssp ---HHH--HHHHHHHH--S
T ss_pred cCCHHH--HHHHHHHHCCC
Confidence 489998 89999998865
No 54
>PF13964 Kelch_6: Kelch motif
Probab=29.12 E-value=38 Score=17.93 Aligned_cols=14 Identities=36% Similarity=0.499 Sum_probs=10.7
Q ss_pred eeeeeeCCCCCCHH
Q 035253 23 RQVWEFDPELGSPE 36 (69)
Q Consensus 23 RQ~WEFDp~~GtpE 36 (69)
..+|.|||...+=+
T Consensus 28 ~~v~~yd~~t~~W~ 41 (50)
T PF13964_consen 28 NDVERYDPETNTWE 41 (50)
T ss_pred ccEEEEcCCCCcEE
Confidence 57899999977533
No 55
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=29.08 E-value=45 Score=19.02 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=14.2
Q ss_pred ceeecCCccceeeeeeCC
Q 035253 13 WLRTLNNHVGRQVWEFDP 30 (69)
Q Consensus 13 ~L~S~Nn~vGRQ~WEFDp 30 (69)
.|.+.++.-+.|.|.|++
T Consensus 25 ~~~~c~~~~~~Q~W~~~~ 42 (124)
T cd00161 25 QLYPCHGNGNNQKWTLTS 42 (124)
T ss_pred EEEECCCCCccCCEEEeC
Confidence 467777665789999998
No 56
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=29.01 E-value=32 Score=18.37 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=10.9
Q ss_pred CCccceeeeeeCCCCCC
Q 035253 18 NNHVGRQVWEFDPELGS 34 (69)
Q Consensus 18 Nn~vGRQ~WEFDp~~Gt 34 (69)
+... -.+|.||++.++
T Consensus 15 ~~~~-nd~~~~~~~~~~ 30 (49)
T PF13415_consen 15 GTRL-NDVWVFDLDTNT 30 (49)
T ss_pred CCEe-cCEEEEECCCCE
Confidence 4444 378999998764
No 57
>KOG1621 consensus 1D-myo-inositol-triphosphate 3-kinase A [Lipid transport and metabolism]
Probab=28.92 E-value=30 Score=28.56 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=12.2
Q ss_pred eeCCCCCCHHHHHH
Q 035253 27 EFDPELGSPEELAK 40 (69)
Q Consensus 27 EFDp~~GtpEEra~ 40 (69)
.-||++-|+||+|+
T Consensus 291 avDp~aPTeEE~aq 304 (458)
T KOG1621|consen 291 AVDPDAPTEEERAQ 304 (458)
T ss_pred ccCCCCCCHHHhhc
Confidence 45999999999986
No 58
>PF11178 DUF2963: Protein of unknown function (DUF2963); InterPro: IPR021348 This family of proteins with unknown function appears to be restricted to Mollicutes.
Probab=28.40 E-value=35 Score=19.66 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=9.4
Q ss_pred eeeeeeCCCCCC
Q 035253 23 RQVWEFDPELGS 34 (69)
Q Consensus 23 RQ~WEFDp~~Gt 34 (69)
..+.||||..|.
T Consensus 9 ~~I~eydp~Tg~ 20 (51)
T PF11178_consen 9 DYITEYDPQTGK 20 (51)
T ss_pred EEEEEECcccCc
Confidence 467899999875
No 59
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=27.98 E-value=29 Score=23.57 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=12.5
Q ss_pred ccceeeeeeCCCCCCH
Q 035253 20 HVGRQVWEFDPELGSP 35 (69)
Q Consensus 20 ~vGRQ~WEFDp~~Gtp 35 (69)
|.|.|.|.||....+.
T Consensus 116 Fkg~~y~ry~~~~~~v 131 (194)
T cd00094 116 FKGDKYWRYDEKTQKM 131 (194)
T ss_pred EeCCEEEEEeCCCccc
Confidence 4599999999876554
No 60
>smart00390 GoLoco LGN motif, putative GEFs specific for G-alpha GTPases. GEF specific for Galpha_i proteins
Probab=27.93 E-value=31 Score=18.11 Aligned_cols=9 Identities=56% Similarity=0.822 Sum_probs=7.2
Q ss_pred hHHhhhhhc
Q 035253 60 DLLMRLQRW 68 (69)
Q Consensus 60 DlLmR~Q~~ 68 (69)
|||+|+|-.
T Consensus 6 elL~r~Qs~ 14 (26)
T smart00390 6 DLLLRMQSS 14 (26)
T ss_pred HHHHHHHhh
Confidence 789999864
No 61
>PF09252 Feld-I_B: Allergen Fel d I-B chain; InterPro: IPR015332 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans. The nomenclature system uses the first three letters of the genus, followed by the first letter of the species name, followed by a number (additional letters can be added to the name as required to discriminate between similar designations). Fel d 1 is allergen 1 from Felis silvestris catus (Cat), which is an important agent in human allergic reactions []. The protein is expressed in saliva and sebaceous glands. The complete primary structure of Fel d 1 has been determined []. The allergen is tetrameric glycoprotein consisting of two disulphide-linked heterodimers of chains 1 and 2, which have been shown to be encoded by different genes. Fel d 1 chains 1 and 2 share structural similarity with uteroglobin, a secretoglobin superfamily member; chain 2 is a glycoprotein with N-linked oligosaccharides. This entry represents Fel d 1 chain 2.; GO: 0005615 extracellular space; PDB: 1ZKR_B 1PUO_B 2EJN_B.
Probab=27.51 E-value=45 Score=20.97 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHHHhhcccccC
Q 035253 32 LGSPEELAKIEKARENFHNHRFEKK 56 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~nRf~~k 56 (69)
..|++|+++.|+...=|..+....|
T Consensus 27 naT~~E~~AfeKIQdCynE~Glk~K 51 (67)
T PF09252_consen 27 NATDEEKEAFEKIQDCYNEEGLKAK 51 (67)
T ss_dssp T--HHHHHHHHHHHHHHHHCCHHHH
T ss_pred cCChHHHHHHHHHHHHHhccCchhh
Confidence 4799999999999999998876544
No 62
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.55 E-value=78 Score=20.51 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 035253 32 LGSPEELAKIEKARENFHN 50 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~ 50 (69)
.-|+||..+-+.+|++|-+
T Consensus 20 gLTeeEk~eQ~~LR~eYl~ 38 (77)
T COG4224 20 GLTEEEKKEQAKLRREYLE 38 (77)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4589999999999999865
No 63
>CHL00027 rps15 ribosomal protein S15
Probab=26.52 E-value=1.4e+02 Score=19.40 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=19.2
Q ss_pred eeCCCCCCHHHHHH-----HHHHHHHHhhcccc
Q 035253 27 EFDPELGSPEELAK-----IEKARENFHNHRFE 54 (69)
Q Consensus 27 EFDp~~GtpEEra~-----VE~aR~~F~~nRf~ 54 (69)
|.+.|.||||-+.+ |...-.+|..|+-.
T Consensus 14 ~~~~DTGS~evQiA~LT~rI~~Lt~Hlk~hkKD 46 (90)
T CHL00027 14 EKEENRGSVEFQVFSFTNKIRRLTSHLELHKKD 46 (90)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 56788999998855 55555666665543
No 64
>PF10986 DUF2796: Protein of unknown function (DUF2796); InterPro: IPR021253 This bacterial family of proteins has no known function.
Probab=26.33 E-value=1.7e+02 Score=20.59 Aligned_cols=43 Identities=28% Similarity=0.415 Sum_probs=29.8
Q ss_pred eeeeecCCCcce----eecCCccceeeeeeCCCCCCHHHHHHHHHHHHHHhh
Q 035253 3 KLKIAEGGNAWL----RTLNNHVGRQVWEFDPELGSPEELAKIEKARENFHN 50 (69)
Q Consensus 3 kLKiaegg~p~L----~S~Nn~vGRQ~WEFDp~~GtpEEra~VE~aR~~F~~ 50 (69)
+|-|+-.|+-++ ...=|-|| |.-..-|++|++.|++|+..+.+
T Consensus 10 el~ia~dg~~l~iel~sP~~dlvG-----FEhap~t~~~~~~~~~a~~~L~~ 56 (168)
T PF10986_consen 10 ELNIAQDGNTLLIELESPGADLVG-----FEHAPRTDEQKAALAAALAQLRD 56 (168)
T ss_pred EEEEEEcCCEEEEEEECCcccccc-----cccCCCCHHHHHHHHHHHHHHhC
Confidence 466766554432 23446677 55556699999999999999854
No 65
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=25.85 E-value=60 Score=16.96 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=11.5
Q ss_pred eecCCccceee-eeeCCC
Q 035253 15 RTLNNHVGRQV-WEFDPE 31 (69)
Q Consensus 15 ~S~Nn~vGRQ~-WEFDp~ 31 (69)
-+.-...|+.+ |+||+.
T Consensus 8 ~~~~d~~G~~~~y~YD~~ 25 (38)
T PF05593_consen 8 TSVTDPDGRTTRYTYDAA 25 (38)
T ss_pred EEEEcCCCCEEEEEECCC
Confidence 33336677776 999976
No 66
>PF14304 CSTF_C: Transcription termination and cleavage factor C-terminal; PDB: 2J8P_A.
Probab=25.69 E-value=66 Score=18.81 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 035253 32 LGSPEELAKIEKARENFHNH 51 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~n 51 (69)
+-.|+||+.|-.+|+.+.++
T Consensus 24 ~LPp~qR~~I~~Lr~ql~~~ 43 (46)
T PF14304_consen 24 ALPPDQRQQILQLRQQLMRG 43 (46)
T ss_dssp TS-HHHHTHHHHHHHHHH--
T ss_pred hCCHHHHHHHHHHHHHHHhc
Confidence 44689999999999988653
No 67
>KOG3355 consensus Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=25.44 E-value=15 Score=26.89 Aligned_cols=26 Identities=23% Similarity=0.598 Sum_probs=21.0
Q ss_pred cCCccceeeeee-------CCCCCCHHHHHHHH
Q 035253 17 LNNHVGRQVWEF-------DPELGSPEELAKIE 42 (69)
Q Consensus 17 ~Nn~vGRQ~WEF-------Dp~~GtpEEra~VE 42 (69)
+++-+||-+|.| =|+--||||+...-
T Consensus 69 ~~eeLGRstWtllHT~aA~yP~~PT~eqk~~~~ 101 (177)
T KOG3355|consen 69 DKEELGRSTWTLLHTLAANYPDRPTPEQKDDMR 101 (177)
T ss_pred hHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHH
Confidence 567799999986 58899999986543
No 68
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=25.17 E-value=44 Score=26.24 Aligned_cols=19 Identities=42% Similarity=0.819 Sum_probs=15.9
Q ss_pred eeeeCCCCCCHHHHHHHHHH
Q 035253 25 VWEFDPELGSPEELAKIEKA 44 (69)
Q Consensus 25 ~WEFDp~~GtpEEra~VE~a 44 (69)
-||+-|+.| .||.+|||+-
T Consensus 151 g~~~~~~~~-~eE~eEVe~e 169 (294)
T KOG2881|consen 151 GWEMSPSEG-QEELEEVEAE 169 (294)
T ss_pred hhcCCCccc-hhhHHHHHHH
Confidence 599999988 8888888763
No 69
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=24.60 E-value=93 Score=21.73 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcccc
Q 035253 30 PELGSPEELAKIEKARENFHNHRFE 54 (69)
Q Consensus 30 p~~GtpEEra~VE~aR~~F~~nRf~ 54 (69)
|-+.||++.++|++.=+.|...|-+
T Consensus 27 p~tysp~~l~~i~~~~~~i~~~~~r 51 (142)
T TIGR03042 27 PPTYSPAQLAQIQRQAEGIEAAKDR 51 (142)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999998888888776643
No 70
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=24.29 E-value=15 Score=24.78 Aligned_cols=16 Identities=31% Similarity=0.873 Sum_probs=12.5
Q ss_pred CcceeecCCccceeeeeeCCCCC
Q 035253 11 NAWLRTLNNHVGRQVWEFDPELG 33 (69)
Q Consensus 11 ~p~L~S~Nn~vGRQ~WEFDp~~G 33 (69)
|||++. .+|.|||.++
T Consensus 39 DPW~RN-------evwrY~~ph~ 54 (100)
T KOG4631|consen 39 DPWGRN-------EVWRYMGPHG 54 (100)
T ss_pred Cchhcc-------hhhhccCccc
Confidence 899874 6899998554
No 71
>PF13308 YARHG: YARHG domain
Probab=24.16 E-value=54 Score=20.07 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=19.2
Q ss_pred cCCccceeeeeeCCCC----CCHHHHHHHHHHHH
Q 035253 17 LNNHVGRQVWEFDPEL----GSPEELAKIEKARE 46 (69)
Q Consensus 17 ~Nn~vGRQ~WEFDp~~----GtpEEra~VE~aR~ 46 (69)
.+++-+.+.| |.|.. -|+.|++-|+..++
T Consensus 46 l~~yF~~~~W-Y~~~~~~~~l~~~E~~ni~~i~~ 78 (81)
T PF13308_consen 46 LQAYFSSKSW-YKPEYSDSVLNEIEKANIDLIKK 78 (81)
T ss_pred HHHHHcCCCc-cCCCcccCCCCHHHHHHHHHHHH
Confidence 3455567777 44444 68888888887654
No 72
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=23.77 E-value=1.1e+02 Score=24.67 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=20.8
Q ss_pred CccceeeeeeCCC-------------CCCHHHHHHHHHHHHH
Q 035253 19 NHVGRQVWEFDPE-------------LGSPEELAKIEKAREN 47 (69)
Q Consensus 19 n~vGRQ~WEFDp~-------------~GtpEEra~VE~aR~~ 47 (69)
+--||-+|-||.- +.+||=+..||+.++.
T Consensus 39 ~~kgR~YWYfd~p~~~g~~krrYvGp~ddpei~~rv~~~K~~ 80 (349)
T COG5397 39 DRKGRVYWYFDTPDGGGGRKRRYVGPADDPEIAQRVERHKAV 80 (349)
T ss_pred ccCCceEEEEecCCCCCCceecccCCCCCHHHHHHHHHHHHh
Confidence 6679999999842 3467777778876553
No 73
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=23.77 E-value=41 Score=17.26 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=6.6
Q ss_pred ceeeeeeCCC
Q 035253 22 GRQVWEFDPE 31 (69)
Q Consensus 22 GRQ~WEFDp~ 31 (69)
|.+.|.++-.
T Consensus 1 G~~~W~~~~~ 10 (40)
T PF13570_consen 1 GKVLWSYDTG 10 (40)
T ss_dssp S-EEEEEE-S
T ss_pred CceeEEEECC
Confidence 7889999754
No 74
>PF07985 SRR1: SRR1; InterPro: IPR012942 Sensitivity To Red Light Reduced proteins (SRR1) are signalling proteins thought to be involved in regulating the circadian clock input pathway, which is required for normal oscillator function. In Arabidopsis thaliana it regulates the expression of clock-regulated genes such as CCA1 and TOC1. It is also involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways [].
Probab=23.75 E-value=1e+02 Score=17.71 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=15.5
Q ss_pred eeeeeeCCCCCCHHHHHHHHH
Q 035253 23 RQVWEFDPELGSPEELAKIEK 43 (69)
Q Consensus 23 RQ~WEFDp~~GtpEEra~VE~ 43 (69)
-+++-|||-. |+.|++-++.
T Consensus 35 ~~v~~yDPvf-t~~d~~~L~~ 54 (56)
T PF07985_consen 35 DQVSIYDPVF-TEVDKAFLES 54 (56)
T ss_pred CcEEEECCCC-CHHHHHHHHH
Confidence 4899999986 6877776654
No 75
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=23.36 E-value=64 Score=23.74 Aligned_cols=14 Identities=29% Similarity=0.171 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHH
Q 035253 32 LGSPEELAKIEKAR 45 (69)
Q Consensus 32 ~GtpEEra~VE~aR 45 (69)
.-|+|||.|||.+.
T Consensus 138 hMSeeER~EaeQLQ 151 (179)
T PF14723_consen 138 HMSEEEREEAEQLQ 151 (179)
T ss_pred cCCHHHHHHHHHHH
Confidence 46899999998754
No 76
>PF03842 Silic_transp: Silicon transporter; InterPro: IPR004693 Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterised member of the family (Sit1) functions in the energy-dependent uptake of either silicic acid [Si(OH)4] or silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms, which make their "glass houses" out of silicon.
Probab=23.33 E-value=15 Score=30.65 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=20.1
Q ss_pred eeeCCC-CCCHHHHHHHHHHHHHHhhcc
Q 035253 26 WEFDPE-LGSPEELAKIEKARENFHNHR 52 (69)
Q Consensus 26 WEFDp~-~GtpEEra~VE~aR~~F~~nR 52 (69)
.+||.- -||||||+..+++-.++...+
T Consensus 426 ~q~DevYvgt~eer~~~~~~d~~~~~~~ 453 (512)
T PF03842_consen 426 FQYDEVYVGTAEERAANDKADKEMHSGA 453 (512)
T ss_pred CCccceEeCCHHHhhcccCCccccccCc
Confidence 345655 499999999888877776543
No 77
>COG5474 Uncharacterized conserved protein [Function unknown]
Probab=23.30 E-value=78 Score=22.89 Aligned_cols=26 Identities=35% Similarity=0.602 Sum_probs=22.9
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhh
Q 035253 25 VWEFDPELGSPEELAKIEKARENFHN 50 (69)
Q Consensus 25 ~WEFDp~~GtpEEra~VE~aR~~F~~ 50 (69)
+-+||-+-|.|-|+.+|-++|.-|..
T Consensus 45 ~i~y~~e~gDpRELsEIPEvRlWF~r 70 (159)
T COG5474 45 IIGYDDEPGDPRELSEIPEVRLWFKR 70 (159)
T ss_pred EEeccCCCCChHHhhhchHHHHHHHH
Confidence 34789889999999999999999864
No 78
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=22.98 E-value=1.1e+02 Score=22.42 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=24.0
Q ss_pred eeeeeCCCCCCHHHHHHH-----HHHHHHHhhcccccCcchhHHhhhh
Q 035253 24 QVWEFDPELGSPEELAKI-----EKARENFHNHRFEKKQSADLLMRLQ 66 (69)
Q Consensus 24 Q~WEFDp~~GtpEEra~V-----E~aR~~F~~nRf~~k~ssDlLmR~Q 66 (69)
-.|+|||-.-|.|++..- +.+|+..... +. ..|.|-.++
T Consensus 141 ~~~~~~~~~~t~ed~~r~~~y~~~~~r~~~~~~-~~---~~~~l~~l~ 184 (320)
T TIGR01686 141 FLNELLPLANTKEDRIRAKDYAANALREELKEL-SD---DEEYLQNLE 184 (320)
T ss_pred ccccccCccCCHHHHHHHHHHHHHHHHHHHHhc-CC---HHHHHHhCC
Confidence 468999999999987643 3344444321 21 456665554
No 79
>COG3575 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.96 E-value=83 Score=23.21 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=20.1
Q ss_pred eeeeC-CCCCCHHHHHHHHHHHHHHhhcccc
Q 035253 25 VWEFD-PELGSPEELAKIEKARENFHNHRFE 54 (69)
Q Consensus 25 ~WEFD-p~~GtpEEra~VE~aR~~F~~nRf~ 54 (69)
+=-|| ++....+|.+..-++.+.|..+|+.
T Consensus 61 v~yFD~~dls~e~e~~~~kkl~~~f~~~~~~ 91 (184)
T COG3575 61 VIYFDDADLSYEAEAALEKKLAEQFPQLRYP 91 (184)
T ss_pred EEEecCcccChHHHHHHHHHHHHhccCCCCc
Confidence 34589 4554455666667799999987743
No 80
>KOG3852 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.32 E-value=27 Score=28.43 Aligned_cols=34 Identities=32% Similarity=0.688 Sum_probs=25.0
Q ss_pred eeecCCCcc-eeecCCccceeeeeeCCCCCCHHHHHHHHHHHHHHh
Q 035253 5 KIAEGGNAW-LRTLNNHVGRQVWEFDPELGSPEELAKIEKARENFH 49 (69)
Q Consensus 5 Kiaegg~p~-L~S~Nn~vGRQ~WEFDp~~GtpEEra~VE~aR~~F~ 49 (69)
|+..+.+-| |.|+||.-|+-+ |+.-|...|+.|.
T Consensus 176 KVctd~drWSLiSLsN~~Gknv-----------ELKFVds~RRQFE 210 (426)
T KOG3852|consen 176 KVCTDSDRWSLISLSNNSGKNV-----------ELKFVDSLRRQFE 210 (426)
T ss_pred HhccCCCeEEEEEecCCCCCee-----------EEEehHhhhhhee
Confidence 455555666 899999888765 5667888888764
No 81
>PF15056 NRN1: Neuritin protein family
Probab=21.95 E-value=1e+02 Score=20.45 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=18.8
Q ss_pred CCCHHHHHHH-HHHHHHHhhcccc
Q 035253 32 LGSPEELAKI-EKARENFHNHRFE 54 (69)
Q Consensus 32 ~GtpEEra~V-E~aR~~F~~nRf~ 54 (69)
+|-|||-|.| |.+|++-.+-+|+
T Consensus 51 a~C~eeAa~iWEsLrqESrk~~f~ 74 (89)
T PF15056_consen 51 ADCPEEAAAIWESLRQESRKMQFQ 74 (89)
T ss_pred hCCcHHHHHHHHHHHHHHHcCCCC
Confidence 5778998776 8999998887775
No 82
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=21.46 E-value=1.1e+02 Score=17.54 Aligned_cols=41 Identities=27% Similarity=0.458 Sum_probs=23.1
Q ss_pred ceeeeeeC-CC---------CCCHHHHHHHHHHHHHHhhcccccCcchhHH
Q 035253 22 GRQVWEFD-PE---------LGSPEELAKIEKARENFHNHRFEKKQSADLL 62 (69)
Q Consensus 22 GRQ~WEFD-p~---------~GtpEEra~VE~aR~~F~~nRf~~k~ssDlL 62 (69)
|..+-.|+ |+ ...|++++++-++=+.+...+|..++-.+-+
T Consensus 40 ~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~~t~~~~~~~i 90 (92)
T PF13524_consen 40 GEHIITYNDPEELAEKIEYLLENPEERRRIAKNARERVLKRHTWEHRAEQI 90 (92)
T ss_pred CCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55666664 22 2456666665555555556666666655543
No 83
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=21.38 E-value=1.4e+02 Score=17.72 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=19.4
Q ss_pred eeeeeeCCCCCCHHHHHHHHHHHHHH
Q 035253 23 RQVWEFDPELGSPEELAKIEKARENF 48 (69)
Q Consensus 23 RQ~WEFDp~~GtpEEra~VE~aR~~F 48 (69)
++.=+|-|.. |++||+.|-++-+.+
T Consensus 16 ~~~l~Fpp~l-s~~eR~~vH~~a~~~ 40 (59)
T cd06007 16 NEEYEFPSSL-TNHERAVIHRLCRKL 40 (59)
T ss_pred ccEEEcCCCC-CHHHHHHHHHHHHHc
Confidence 4667888875 799999998876664
No 84
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=21.09 E-value=85 Score=17.85 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHHh
Q 035253 33 GSPEELAKIEKARENFH 49 (69)
Q Consensus 33 GtpEEra~VE~aR~~F~ 49 (69)
-|++++++++.+|++|-
T Consensus 16 L~~~q~~~m~wvr~~ym 32 (51)
T PF06955_consen 16 LSAKQRRQMRWVRRNYM 32 (51)
T ss_dssp --HHHHHHHHHHHHHCE
T ss_pred CCHHHHHHHHHHHHcCe
Confidence 47899999999999874
No 85
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=20.95 E-value=1.1e+02 Score=20.48 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=18.6
Q ss_pred cceeecCCccceeeee---eCCCCCCHHHHHH-HHHH
Q 035253 12 AWLRTLNNHVGRQVWE---FDPELGSPEELAK-IEKA 44 (69)
Q Consensus 12 p~L~S~Nn~vGRQ~WE---FDp~~GtpEEra~-VE~a 44 (69)
|...+.+..-|=++-. -||..||.||..+ |++|
T Consensus 25 Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~ 61 (316)
T PF00128_consen 25 PIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAA 61 (316)
T ss_dssp S-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHH
T ss_pred cccccccccccccceeeeccccccchhhhhhhhhhcc
Confidence 4444444444444433 4999999987644 4444
No 86
>PF03901 Glyco_transf_22: Alg9-like mannosyltransferase family; InterPro: IPR005599 Members of this family are glycosylphosphatidylinositol mannosyltransferase enzymes 2.4.1.- from EC [, ]. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis [, ]. In yeast the SMP3 (YOR149C) has been implemented in plasmid stability [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0006506 GPI anchor biosynthetic process, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=20.86 E-value=32 Score=25.80 Aligned_cols=12 Identities=42% Similarity=0.919 Sum_probs=9.7
Q ss_pred ceeeeeeCCCCC
Q 035253 22 GRQVWEFDPELG 33 (69)
Q Consensus 22 GRQ~WEFDp~~G 33 (69)
|-++|||+|..|
T Consensus 41 g~~tWE~~~~~~ 52 (418)
T PF03901_consen 41 GYLTWEWSPFPG 52 (418)
T ss_pred cchhhhhccCCC
Confidence 789999977754
No 87
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=20.79 E-value=71 Score=24.86 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=18.9
Q ss_pred CccceeeeeeCCC----------------CCCHHH--HHHHHHHHHHHhh
Q 035253 19 NHVGRQVWEFDPE----------------LGSPEE--LAKIEKARENFHN 50 (69)
Q Consensus 19 n~vGRQ~WEFDp~----------------~GtpEE--ra~VE~aR~~F~~ 50 (69)
.|+||+.....|. .-+|.| .++|++..++|.+
T Consensus 104 ~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~ 153 (363)
T COG1902 104 WHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFAR 153 (363)
T ss_pred ccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHH
Confidence 5889887655542 223432 2567777777754
No 88
>smart00131 KU BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein.
Probab=20.72 E-value=73 Score=17.30 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=10.1
Q ss_pred eeeeeeCCCCCCH
Q 035253 23 RQVWEFDPELGSP 35 (69)
Q Consensus 23 RQ~WEFDp~~Gtp 35 (69)
...|-|||..+.=
T Consensus 16 ~~~w~yd~~~~~C 28 (53)
T smart00131 16 IPRYYYDPETGTC 28 (53)
T ss_pred eeEEEEeCCCCcc
Confidence 4679999998753
No 89
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=20.69 E-value=80 Score=25.62 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=24.6
Q ss_pred eeeeecCC--CcceeecCCccceeeeeeCCCCCC
Q 035253 3 KLKIAEGG--NAWLRTLNNHVGRQVWEFDPELGS 34 (69)
Q Consensus 3 kLKiaegg--~p~L~S~Nn~vGRQ~WEFDp~~Gt 34 (69)
||-|++|. +|-.-..|..+|+..|.|.|++.+
T Consensus 397 rl~v~ege~v~~p~~~~~~~~~~~~~~~~p~l~~ 430 (484)
T cd03557 397 RLVVNEVDAVEPPEDLPNLPVARALWKPEPDLKT 430 (484)
T ss_pred EEEEEEEEEecCCcccCCCCCceEEEEECCCHHH
Confidence 67788873 444557788999999999998654
No 90
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=20.66 E-value=1.6e+02 Score=19.10 Aligned_cols=28 Identities=36% Similarity=0.685 Sum_probs=16.6
Q ss_pred ccceeeeee-CCC--CCCHHHHH-HHHHHHHH
Q 035253 20 HVGRQVWEF-DPE--LGSPEELA-KIEKAREN 47 (69)
Q Consensus 20 ~vGRQ~WEF-Dp~--~GtpEEra-~VE~aR~~ 47 (69)
.+.+..|.| ||. .||+||+. ..++.|..
T Consensus 90 ~~~~~~w~i~DP~~~~g~~~~~~~~~~~~~~~ 121 (129)
T TIGR02691 90 HVKREHWGLDDPARAEGTEEEKWAVFRRVRDE 121 (129)
T ss_pred CCeEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 344668988 664 36777763 34555443
No 91
>smart00642 Aamy Alpha-amylase domain.
Probab=20.44 E-value=92 Score=21.12 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=13.5
Q ss_pred eeCCCCCCHHHHH-HHHHHHH
Q 035253 27 EFDPELGSPEELA-KIEKARE 46 (69)
Q Consensus 27 EFDp~~GtpEEra-~VE~aR~ 46 (69)
..||..||.||.. -|++|++
T Consensus 61 ~i~~~~Gt~~d~~~lv~~~h~ 81 (166)
T smart00642 61 QIDPRFGTMEDFKELVDAAHA 81 (166)
T ss_pred CCCcccCCHHHHHHHHHHHHH
Confidence 3478899998864 4555554
No 92
>smart00612 Kelch Kelch domain.
Probab=20.44 E-value=75 Score=15.51 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=9.7
Q ss_pred eeeeeCCCCCCHHH
Q 035253 24 QVWEFDPELGSPEE 37 (69)
Q Consensus 24 Q~WEFDp~~GtpEE 37 (69)
.+|.|||...+=++
T Consensus 16 ~v~~yd~~~~~W~~ 29 (47)
T smart00612 16 SVEVYDPETNKWTP 29 (47)
T ss_pred eEEEECCCCCeEcc
Confidence 57888888765443
No 93
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=20.19 E-value=60 Score=28.91 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=16.7
Q ss_pred CcceeecCCccceeeeeeCCCCC
Q 035253 11 NAWLRTLNNHVGRQVWEFDPELG 33 (69)
Q Consensus 11 ~p~L~S~Nn~vGRQ~WEFDp~~G 33 (69)
-|+++|+| |+++|.-|--++
T Consensus 106 ~Pfif~SN---G~~~~~~D~~~~ 125 (875)
T COG4096 106 VPFIFSSN---GDEFWFWDRTAY 125 (875)
T ss_pred ceEEEEec---CceEEEEecCcc
Confidence 79999999 789999986543
Done!