Query 035253
Match_columns 69
No_of_seqs 108 out of 171
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 17:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 71.8 1.9 6.4E-05 34.5 2.1 8 22-29 32-39 (732)
2 3bhp_A UPF0291 protein YNZC; N 61.9 6.3 0.00022 23.4 2.6 20 32-51 21-40 (60)
3 2jvd_A UPF0291 protein YNZC; s 61.8 6.8 0.00023 22.8 2.7 20 32-51 21-40 (54)
4 2j8p_A Cleavage stimulation fa 59.7 5.6 0.00019 22.7 2.0 20 32-51 26-45 (49)
5 3oyo_A Hemopexin fold protein 54.7 4.7 0.00016 27.6 1.3 16 20-35 186-201 (225)
6 3q8g_A CRAL-TRIO domain-contai 54.1 16 0.00055 25.8 4.1 34 32-65 34-67 (320)
7 1r44_A D-alanyl-D-alanine dipe 50.0 7.3 0.00025 27.0 1.7 35 15-49 22-58 (202)
8 2hep_A UPF0291 protein YNZC; S 49.1 13 0.00044 23.3 2.6 19 33-51 22-40 (85)
9 3c7x_A Matrix metalloproteinas 44.4 4.3 0.00015 27.2 -0.2 15 20-34 115-129 (196)
10 1aua_A Phosphatidylinositol tr 43.5 24 0.00081 24.0 3.4 33 33-65 26-58 (296)
11 2og0_A Excisionase; protein-DN 41.3 9.1 0.00031 21.5 0.9 11 21-32 37-47 (52)
12 3lay_A Zinc resistance-associa 40.1 19 0.00064 24.5 2.5 22 33-54 68-89 (175)
13 4rxn_A Rubredoxin; electron tr 31.6 16 0.00054 20.8 0.9 12 26-37 11-22 (54)
14 1fth_A ACPS, acyl carrier prot 31.4 11 0.00039 22.7 0.3 26 33-58 32-61 (122)
15 1xhb_A Polypeptide N-acetylgal 31.4 23 0.0008 25.2 1.9 24 11-34 404-427 (472)
16 2ki0_A DS119; beta-alpha-beta, 31.1 31 0.0011 18.6 2.0 15 23-41 6-20 (36)
17 1itv_A MMP9; adaptive molecula 31.1 10 0.00035 25.3 -0.0 15 20-34 115-129 (195)
18 3gwl_A P14, FAD-linked sulfhyd 30.7 19 0.00064 22.3 1.2 40 20-60 6-52 (106)
19 1pm6_A Excisionase; antiparall 30.6 15 0.00053 21.8 0.7 11 21-32 37-47 (72)
20 2ffu_A Ppgalnact-2, polypeptid 30.5 22 0.00074 25.7 1.6 23 11-33 437-459 (501)
21 2bf9_A Pancreatic hormone; tur 29.9 62 0.0021 17.5 3.0 20 31-50 10-29 (36)
22 2lqt_A Coiled-coil-helix-coile 29.9 35 0.0012 21.4 2.3 16 29-44 64-79 (85)
23 1pex_A Collagenase-3, MMP-13; 29.5 11 0.00038 25.4 -0.0 14 20-33 133-146 (207)
24 1gen_A Gelatinase A; hydrolase 29.0 17 0.00057 24.7 0.8 15 20-34 141-155 (218)
25 1g0d_A Protein-glutamine gamma 28.8 25 0.00084 29.0 1.8 34 13-46 411-458 (695)
26 2a98_A Inositol 1,4,5-trisphos 28.0 19 0.00067 25.7 1.0 12 29-40 94-105 (259)
27 1vju_A Coproporphyrinogen III 27.2 20 0.00069 27.0 1.0 26 11-39 271-298 (309)
28 2eo2_A Adult MALE hypothalamus 26.6 37 0.0013 20.8 2.0 14 28-41 45-58 (71)
29 2y39_A Nickel and cobalt resis 26.5 45 0.0015 21.8 2.5 29 25-53 13-41 (118)
30 1l8n_A Alpha-D-glucuronidase; 26.4 16 0.00055 30.2 0.4 40 21-64 465-504 (679)
31 1f7l_A Holo-(acyl carrier prot 26.3 9.8 0.00034 22.7 -0.7 25 33-57 30-58 (121)
32 1rpb_A Tricyclic peptide RP 71 25.8 19 0.00064 18.3 0.4 10 14-23 4-13 (26)
33 4gqr_A Pancreatic alpha-amylas 25.4 41 0.0014 23.4 2.3 18 29-46 70-88 (496)
34 3lp9_A LS-24; SEED albumin, pl 24.6 17 0.00057 24.8 0.1 14 20-33 189-202 (227)
35 1gqi_A Alpha-glucuronidase; (a 24.6 16 0.00056 30.2 0.1 40 21-64 462-501 (708)
36 3oc5_A Toxin coregulated pilus 24.0 28 0.00094 26.4 1.2 17 15-31 258-274 (318)
37 2wbq_A L-arginine beta-hydroxy 23.8 65 0.0022 22.6 3.1 33 16-51 15-47 (358)
38 2ysf_A E3 ubiquitin-protein li 23.2 64 0.0022 16.5 2.3 28 2-32 12-39 (40)
39 3v5w_G G gamma-I, guanine nucl 23.1 51 0.0017 20.2 2.1 30 35-64 16-45 (77)
40 1qhu_A Protein (hemopexin); be 23.1 23 0.0008 27.0 0.7 16 20-35 203-218 (460)
41 3h1t_A Type I site-specific re 22.7 71 0.0024 23.4 3.2 28 11-41 116-152 (590)
42 4frf_A Inositol polyphosphate 22.6 41 0.0014 23.7 1.9 14 21-37 90-103 (275)
43 1yk4_A Rubredoxin, RD; electro 22.4 25 0.00087 19.6 0.6 11 26-36 10-20 (52)
44 3hym_A Anaphase-promoting comp 22.4 36 0.0012 17.6 1.2 16 33-48 11-26 (29)
45 1hxn_A Hemopexin, HPX; heme, b 22.1 30 0.001 23.6 1.1 12 20-31 78-89 (219)
46 1got_G GT-gamma; complex (GTP- 22.1 40 0.0014 20.1 1.5 29 36-64 21-49 (73)
47 4aie_A Glucan 1,6-alpha-glucos 22.0 60 0.0021 23.2 2.6 22 25-46 69-91 (549)
48 3h8k_B Autocrine motility fact 21.7 91 0.0031 15.7 2.7 16 34-49 2-26 (28)
49 2wk1_A NOVP; transferase, O-me 21.3 27 0.00092 24.8 0.7 31 21-51 134-184 (282)
50 3pcv_A Leukotriene C4 synthase 21.0 71 0.0024 21.0 2.7 21 31-51 39-59 (156)
51 1e8j_A Rubredoxin; iron-sulfur 20.9 22 0.00075 19.8 0.1 11 26-36 11-21 (52)
52 1bba_A Bovine pancreatic polyp 20.6 79 0.0027 17.0 2.3 20 31-50 10-29 (36)
53 3f4m_A Tumor necrosis factor, 20.4 73 0.0025 21.7 2.7 20 31-50 54-73 (161)
54 3ulw_A 30S ribosomal protein S 20.4 94 0.0032 19.3 3.0 25 28-52 21-50 (93)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=71.80 E-value=1.9 Score=34.48 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=7.3
Q ss_pred ceeeeeeC
Q 035253 22 GRQVWEFD 29 (69)
Q Consensus 22 GRQ~WEFD 29 (69)
|||+|+|-
T Consensus 32 ~~~~w~~~ 39 (732)
T 1w6k_A 32 GRQTWTYL 39 (732)
T ss_dssp TEEEEEEC
T ss_pred Cccceecc
Confidence 99999995
No 2
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=61.87 E-value=6.3 Score=23.36 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 035253 32 LGSPEELAKIEKARENFHNH 51 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~n 51 (69)
.-|+||.++-..+|++|-++
T Consensus 21 gLT~eEk~EQ~~LR~eYl~~ 40 (60)
T 3bhp_A 21 VITEEEKAEQQKLRQEYLKG 40 (60)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 45999999999999998764
No 3
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=61.78 E-value=6.8 Score=22.85 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 035253 32 LGSPEELAKIEKARENFHNH 51 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~n 51 (69)
.-|+||.++-..+|++|-++
T Consensus 21 gLT~eEk~EQ~~LR~eYl~~ 40 (54)
T 2jvd_A 21 VITEEEKAEQQKLRQEYLKG 40 (54)
T ss_dssp CCCHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35999999999999999764
No 4
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=59.66 E-value=5.6 Score=22.67 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 035253 32 LGSPEELAKIEKARENFHNH 51 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~n 51 (69)
.-.|+||.+|...|+.|.++
T Consensus 26 ~LPp~qR~qI~~LR~q~~~~ 45 (49)
T 2j8p_A 26 MLPPEQRQSILILKEQIQKS 45 (49)
T ss_dssp TSCHHHHTHHHHHHHHHHCC
T ss_pred hCCHHHHHHHHHHHHHHHhc
Confidence 44689999999999999764
No 5
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=54.72 E-value=4.7 Score=27.64 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=13.1
Q ss_pred ccceeeeeeCCCCCCH
Q 035253 20 HVGRQVWEFDPELGSP 35 (69)
Q Consensus 20 ~vGRQ~WEFDp~~Gtp 35 (69)
|.|.|+|.||+..|++
T Consensus 186 FkG~~ywr~d~~~g~~ 201 (225)
T 3oyo_A 186 FKGQNYVRIDFTPGGK 201 (225)
T ss_dssp EETTEEEEEECCTTCG
T ss_pred EECCEEEEEeCCcCCc
Confidence 4599999999997754
No 6
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=54.15 E-value=16 Score=25.85 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcccccCcchhHHhhh
Q 035253 32 LGSPEELAKIEKARENFHNHRFEKKQSADLLMRL 65 (69)
Q Consensus 32 ~GtpEEra~VE~aR~~F~~nRf~~k~ssDlLmR~ 65 (69)
.-|++|.+.|++.|+...++-...+.+...|.|+
T Consensus 34 ~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRF 67 (320)
T 3q8g_A 34 NLTKEQEEALLQFRSILLEKNYKERLDDSTLLRF 67 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 4689999999999999998876555555667775
No 7
>1r44_A D-alanyl-D-alanine dipeptidase; VANX, E.faecium, hydrolase; 2.25A {Enterococcus faecium} SCOP: d.65.1.4
Probab=49.99 E-value=7.3 Score=27.03 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=24.6
Q ss_pred eecCCccceeeeeeC-CC-CCCHHHHHHHHHHHHHHh
Q 035253 15 RTLNNHVGRQVWEFD-PE-LGSPEELAKIEKARENFH 49 (69)
Q Consensus 15 ~S~Nn~vGRQ~WEFD-p~-~GtpEEra~VE~aR~~F~ 49 (69)
.|+|||+||.+=.|+ |. ..+++=.+.+.+|.+...
T Consensus 22 at~~Nf~g~~v~gY~~~~~~Lr~~aa~aL~~aq~~L~ 58 (202)
T 1r44_A 22 ATWDNFTGKPVDGYEVNRIVGTYELAESLLKAKELAA 58 (202)
T ss_dssp GSSCSTTSSCCTTBCSSSCEEEHHHHHHHHHHHHHTT
T ss_pred ccCcccCCCcCCCcCCCcEEECHHHHHHHHHHHHHHH
Confidence 489999999984444 32 367777777777776654
No 8
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=49.07 E-value=13 Score=23.35 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHHhhc
Q 035253 33 GSPEELAKIEKARENFHNH 51 (69)
Q Consensus 33 GtpEEra~VE~aR~~F~~n 51 (69)
-|+||.++-..+|++|-.+
T Consensus 22 LT~eEk~EQ~~LR~eYl~~ 40 (85)
T 2hep_A 22 ITEEEKAEQQKLRQEYLKG 40 (85)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5999999999999999764
No 9
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=44.43 E-value=4.3 Score=27.17 Aligned_cols=15 Identities=27% Similarity=0.580 Sum_probs=12.0
Q ss_pred ccceeeeeeCCCCCC
Q 035253 20 HVGRQVWEFDPELGS 34 (69)
Q Consensus 20 ~vGRQ~WEFDp~~Gt 34 (69)
|.|.|+|.||+...+
T Consensus 115 FkG~~yw~yd~~~~~ 129 (196)
T 3c7x_A 115 FRGNKYYRFNEELRA 129 (196)
T ss_dssp EETTEEEEEETTTTE
T ss_pred EECCEEEEEeCCccc
Confidence 469999999987643
No 10
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=43.55 E-value=24 Score=23.96 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHhhcccccCcchhHHhhh
Q 035253 33 GSPEELAKIEKARENFHNHRFEKKQSADLLMRL 65 (69)
Q Consensus 33 GtpEEra~VE~aR~~F~~nRf~~k~ssDlLmR~ 65 (69)
-|++|.+.|++.|+...++-+....+...|.|+
T Consensus 26 l~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRF 58 (296)
T 1aua_A 26 LDSAQEKALAELRKLLEDAGFIERLDDSTLLRF 58 (296)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCchHHHHHH
Confidence 478899999999999988765545555566664
No 11
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=41.25 E-value=9.1 Score=21.50 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=9.3
Q ss_pred cceeeeeeCCCC
Q 035253 21 VGRQVWEFDPEL 32 (69)
Q Consensus 21 vGRQ~WEFDp~~ 32 (69)
||| .|-||+++
T Consensus 37 vGr-~wrv~~~a 47 (52)
T 2og0_A 37 DGR-EYLFHESA 47 (52)
T ss_dssp ETT-EEEEETTC
T ss_pred cCC-EEEEcccc
Confidence 786 89999886
No 12
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=40.14 E-value=19 Score=24.55 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHhhcccc
Q 035253 33 GSPEELAKIEKARENFHNHRFE 54 (69)
Q Consensus 33 GtpEEra~VE~aR~~F~~nRf~ 54 (69)
-|||+++++.+.|++|......
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~ 89 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSA 89 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999876543
No 13
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=31.62 E-value=16 Score=20.79 Aligned_cols=12 Identities=42% Similarity=1.068 Sum_probs=9.4
Q ss_pred eeeCCCCCCHHH
Q 035253 26 WEFDPELGSPEE 37 (69)
Q Consensus 26 WEFDp~~GtpEE 37 (69)
|.|||..|.|++
T Consensus 11 yvYd~~~Gdp~~ 22 (54)
T 4rxn_A 11 YIYDPEDGDPDD 22 (54)
T ss_dssp CEECTTTCBGGG
T ss_pred eEECCCcCCccc
Confidence 789999877654
No 14
>1fth_A ACPS, acyl carrier protein synthase; bacterial fatty acid biosynthesis, acyl carrier synthase, coenzyme A, X-RAY crystallography; HET: A3P; 1.90A {Streptococcus pneumoniae} SCOP: d.150.1.2 PDB: 1fte_A 1ftf_A*
Probab=31.42 E-value=11 Score=22.67 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHH----HHHHhhcccccCcc
Q 035253 33 GSPEELAKIEKA----RENFHNHRFEKKQS 58 (69)
Q Consensus 33 GtpEEra~VE~a----R~~F~~nRf~~k~s 58 (69)
-||+|++.++.. +.+|.-.||..|.+
T Consensus 32 ~t~~E~~~~~~~~~~~~~~~~a~rwaaKEA 61 (122)
T 1fth_A 32 LTALEMERFTSLKGRRQIEYLAGRWSAKEA 61 (122)
T ss_dssp SCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 589999988764 56666677776654
No 15
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=31.40 E-value=23 Score=25.16 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=18.5
Q ss_pred CcceeecCCccceeeeeeCCCCCC
Q 035253 11 NAWLRTLNNHVGRQVWEFDPELGS 34 (69)
Q Consensus 11 ~p~L~S~Nn~vGRQ~WEFDp~~Gt 34 (69)
...|.+.|+--+-|.|.|+++.|+
T Consensus 404 ~v~l~~C~~~~~~Q~W~~~~~~g~ 427 (472)
T 1xhb_A 404 PVTMLKCHHLKGNQLWEYDPVKLT 427 (472)
T ss_dssp CCEEEECCTTCGGGCEEEETTTTE
T ss_pred eEEEEeCCCCCcCceEEEeCCCCe
Confidence 457888888667899999986553
No 16
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=31.11 E-value=31 Score=18.56 Aligned_cols=15 Identities=53% Similarity=1.070 Sum_probs=10.9
Q ss_pred eeeeeeCCCCCCHHHHHHH
Q 035253 23 RQVWEFDPELGSPEELAKI 41 (69)
Q Consensus 23 RQ~WEFDp~~GtpEEra~V 41 (69)
|-+|. .|||||+..+
T Consensus 6 rtiwv----ggtpeelkkl 20 (36)
T 2ki0_A 6 RTIWV----GGTPEELKKL 20 (36)
T ss_dssp CCCCB----CCCHHHHHHH
T ss_pred EEEEe----cCCHHHHHHH
Confidence 55673 6999998654
No 17
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=31.08 E-value=10 Score=25.28 Aligned_cols=15 Identities=33% Similarity=0.791 Sum_probs=12.3
Q ss_pred ccceeeeeeCCCCCC
Q 035253 20 HVGRQVWEFDPELGS 34 (69)
Q Consensus 20 ~vGRQ~WEFDp~~Gt 34 (69)
|.|-|+|.||+...+
T Consensus 115 Fkg~~ywr~d~~~~~ 129 (195)
T 1itv_A 115 FSGRRLWRFDVKAQM 129 (195)
T ss_dssp EETTEEEEEETTTTE
T ss_pred EeCCEEEEEeCCccc
Confidence 579999999987654
No 18
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}
Probab=30.69 E-value=19 Score=22.32 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=28.0
Q ss_pred ccceeeeee-------CCCCCCHHHHHHHHHHHHHHhhcccccCcchh
Q 035253 20 HVGRQVWEF-------DPELGSPEELAKIEKARENFHNHRFEKKQSAD 60 (69)
Q Consensus 20 ~vGRQ~WEF-------Dp~~GtpEEra~VE~aR~~F~~nRf~~k~ssD 60 (69)
..||-+|-| =|+..|++|+.++...=..|... |-...|++
T Consensus 6 ~~Gra~W~llHt~aa~yP~~Pt~~~~~~~~~~i~~f~~~-yPC~~Ca~ 52 (106)
T 3gwl_A 6 HWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIES-LPCTRCQH 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHH-CSCHHHHH
T ss_pred HhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH-CCCHHHHH
Confidence 368888865 47778999988888877777665 55444444
No 19
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=30.62 E-value=15 Score=21.85 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=9.5
Q ss_pred cceeeeeeCCCC
Q 035253 21 VGRQVWEFDPEL 32 (69)
Q Consensus 21 vGRQ~WEFDp~~ 32 (69)
||| .|-||+++
T Consensus 37 vGr-~Wrv~~~a 47 (72)
T 1pm6_A 37 DGR-EYLFHESA 47 (72)
T ss_dssp CSS-SEEEETTC
T ss_pred cCC-EEEECchh
Confidence 786 89999986
No 20
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=30.47 E-value=22 Score=25.74 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=18.5
Q ss_pred CcceeecCCccceeeeeeCCCCC
Q 035253 11 NAWLRTLNNHVGRQVWEFDPELG 33 (69)
Q Consensus 11 ~p~L~S~Nn~vGRQ~WEFDp~~G 33 (69)
...|.++|+--|.|.|.|+++.|
T Consensus 437 ~v~l~~C~~~~~~Q~W~~~~~~~ 459 (501)
T 2ffu_A 437 LIKLQGCRENDSRQKWEQIEGNS 459 (501)
T ss_dssp BCEEEECCTTCGGGCEEEETTTT
T ss_pred eEEEEecCCCCcCceEEEECCCC
Confidence 45788998877889999998655
No 21
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=29.93 E-value=62 Score=17.47 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 035253 31 ELGSPEELAKIEKARENFHN 50 (69)
Q Consensus 31 ~~GtpEEra~VE~aR~~F~~ 50 (69)
+..||||.|+--.+=++|-+
T Consensus 10 ~dA~~Eela~Y~~~LrhYiN 29 (36)
T 2bf9_A 10 DDAPVEDLIRFYNDLQQYLN 29 (36)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 45799999998877777654
No 22
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=29.91 E-value=35 Score=21.39 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.0
Q ss_pred CCCCCCHHHHHHHHHH
Q 035253 29 DPELGSPEELAKIEKA 44 (69)
Q Consensus 29 Dp~~GtpEEra~VE~a 44 (69)
.|..-|+|||++|-.+
T Consensus 64 ~P~~P~~~eR~~I~~~ 79 (85)
T 2lqt_A 64 KPFMPTAAERDEILRA 79 (85)
T ss_dssp SCSSCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 5778899999998654
No 23
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=29.52 E-value=11 Score=25.43 Aligned_cols=14 Identities=36% Similarity=0.741 Sum_probs=11.4
Q ss_pred ccceeeeeeCCCCC
Q 035253 20 HVGRQVWEFDPELG 33 (69)
Q Consensus 20 ~vGRQ~WEFDp~~G 33 (69)
|.|.|+|.||....
T Consensus 133 FkG~~ywr~d~~~~ 146 (207)
T 1pex_A 133 FSGNQVWRYDDTNH 146 (207)
T ss_dssp EETTEEEEEETTTT
T ss_pred EeCCEEEEEeCcCc
Confidence 57999999998653
No 24
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=28.96 E-value=17 Score=24.68 Aligned_cols=15 Identities=13% Similarity=0.541 Sum_probs=12.0
Q ss_pred ccceeeeeeCCCCCC
Q 035253 20 HVGRQVWEFDPELGS 34 (69)
Q Consensus 20 ~vGRQ~WEFDp~~Gt 34 (69)
|.|.|+|+||+..++
T Consensus 141 FkG~~ywr~d~~~~~ 155 (218)
T 1gen_A 141 FAGDKFWRYNEVKKK 155 (218)
T ss_dssp EETTEEEEEETTTTE
T ss_pred EECCEEEEEECcccc
Confidence 469999999987653
No 25
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=28.83 E-value=25 Score=29.01 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=28.0
Q ss_pred ceeecCCcccee--------------eeeeCCCCCCHHHHHHHHHHHH
Q 035253 13 WLRTLNNHVGRQ--------------VWEFDPELGSPEELAKIEKARE 46 (69)
Q Consensus 13 ~L~S~Nn~vGRQ--------------~WEFDp~~GtpEEra~VE~aR~ 46 (69)
-+.+-..+||+. |-.|-..-||+|||..+++|-+
T Consensus 411 ~~~~~t~~VG~~ISTKaVGsd~ReDIT~~YKypEGS~eER~v~~kA~~ 458 (695)
T 1g0d_A 411 KITEDHASVGKNISTKSVYGNHREDVTLHYKYPEGSQKEREVYKKAGR 458 (695)
T ss_dssp ECEESSCCSSCCCEEECSSSSCEEECHHHHCCCTTCHHHHHHHHHHTC
T ss_pred EEeeccCccCcEeEcccCCCCccccccccCCCCCCCHHHHHHHHHHHh
Confidence 367777889988 6778777799999999999954
No 26
>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural genomics, structural genomics consortium, SGC, transferase; HET: I3P; 2.60A {Homo sapiens}
Probab=28.00 E-value=19 Score=25.69 Aligned_cols=12 Identities=50% Similarity=0.750 Sum_probs=10.1
Q ss_pred CCCCCCHHHHHH
Q 035253 29 DPELGSPEELAK 40 (69)
Q Consensus 29 Dp~~GtpEEra~ 40 (69)
||+|.|+||..+
T Consensus 94 dp~apt~eek~~ 105 (259)
T 2a98_A 94 DPGAPTPEEHAQ 105 (259)
T ss_dssp CTTCSCHHHHHH
T ss_pred CCCCCchHHHHH
Confidence 788999999865
No 27
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
Probab=27.20 E-value=20 Score=27.04 Aligned_cols=26 Identities=31% Similarity=0.638 Sum_probs=18.7
Q ss_pred CcceeecCCccceeeeeeC--CCCCCHHHHH
Q 035253 11 NAWLRTLNNHVGRQVWEFD--PELGSPEELA 39 (69)
Q Consensus 11 ~p~L~S~Nn~vGRQ~WEFD--p~~GtpEEra 39 (69)
+..|-|+--.| -|+|| |..||||++.
T Consensus 271 ESILmSLPp~a---~W~Y~~~pe~gS~Ea~L 298 (309)
T 1vju_A 271 ESILISLPPRA---RWGYNWQPEPGTPEARL 298 (309)
T ss_dssp HHHGGGSCSCC---CCCTTCCCCTTSHHHHH
T ss_pred eeeeecCCccC---eeccCCCCCCCCHHHHH
Confidence 34567776666 68875 8899999753
No 28
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.58 E-value=37 Score=20.75 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=11.5
Q ss_pred eCCCCCCHHHHHHH
Q 035253 28 FDPELGSPEELAKI 41 (69)
Q Consensus 28 FDp~~GtpEEra~V 41 (69)
=||+.-||||+...
T Consensus 45 tdP~~LT~eEi~~F 58 (71)
T 2eo2_A 45 TDPSTLTEEEVRKF 58 (71)
T ss_dssp CSTTTCCHHHHHHH
T ss_pred CCcccCCHHHHhhc
Confidence 39999999997654
No 29
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=26.52 E-value=45 Score=21.83 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=22.6
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhhccc
Q 035253 25 VWEFDPELGSPEELAKIEKARENFHNHRF 53 (69)
Q Consensus 25 ~WEFDp~~GtpEEra~VE~aR~~F~~nRf 53 (69)
-|-|+--.-||++++++|..+..|..-|-
T Consensus 13 ~~vh~~L~Lt~~Q~~~leaie~~fa~~r~ 41 (118)
T 2y39_A 13 EILHEAVPLDANEREILELKEDAFAQRRR 41 (118)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34555555699999999999999987653
No 30
>1l8n_A Alpha-D-glucuronidase; hydrolase; HET: GCW XYP; 1.50A {Geobacillus stearothermophilus} SCOP: c.1.8.10 d.92.2.2 PDB: 1k9d_A* 1mqq_A* 1mqp_A 1mqr_A* 1k9f_A* 1k9e_A*
Probab=26.41 E-value=16 Score=30.18 Aligned_cols=40 Identities=30% Similarity=0.528 Sum_probs=29.3
Q ss_pred cceeeeeeCCCCCCHHHHHHHHHHHHHHhhcccccCcchhHHhh
Q 035253 21 VGRQVWEFDPELGSPEELAKIEKARENFHNHRFEKKQSADLLMR 64 (69)
Q Consensus 21 vGRQ~WEFDp~~GtpEEra~VE~aR~~F~~nRf~~k~ssDlLmR 64 (69)
-||=.| ||++ |+|++++ |=+|..|..+.--+..=.++||.
T Consensus 465 fGRLaW--~p~l-~~~~I~~-EW~~~Tf~~d~~~~~~v~~m~~~ 504 (679)
T 1l8n_A 465 FGRLAW--NPDL-SAEEIAN-EWVVQTFGDDSQVVETISWMLLS 504 (679)
T ss_dssp HHHHHH--CTTS-CHHHHHH-HHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHhhc--CCCC-CHHHHHH-HHHHHhcCCCHHHHHHHHHHHHh
Confidence 499999 9996 6888765 77888887665555666666664
No 31
>1f7l_A Holo-(acyl carrier protein) synthase; 9-strand pseudo beta barrel protein, COA complex protein, CO complex, transferase; HET: COA; 1.50A {Bacillus subtilis} SCOP: d.150.1.2 PDB: 1f7t_A 1f80_A*
Probab=26.31 E-value=9.8 Score=22.73 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHH----HHHHhhcccccCc
Q 035253 33 GSPEELAKIEKA----RENFHNHRFEKKQ 57 (69)
Q Consensus 33 GtpEEra~VE~a----R~~F~~nRf~~k~ 57 (69)
-||+|++.++.. +.+|...||-.|.
T Consensus 30 ~t~~E~~~~~~~~~~~~~~~la~rwaaKE 58 (121)
T 1f7l_A 30 LTRSELDQYYELSEKRKNEFLAGRFAAKE 58 (121)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCcccHHHHHHHHHHHHH
Confidence 489999888653 5667777776654
No 32
>1rpb_A Tricyclic peptide RP 71955; HIV replication inhibitor, replication inhibitor; NMR {Actinomycete SP9440} SCOP: j.24.1.1 PDB: 1rpc_A
Probab=25.77 E-value=19 Score=18.30 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=7.7
Q ss_pred eeecCCccce
Q 035253 14 LRTLNNHVGR 23 (69)
Q Consensus 14 L~S~Nn~vGR 23 (69)
+-|.|||.|=
T Consensus 4 igscn~fagc 13 (26)
T 1rpb_A 4 IGSCNDFAGC 13 (26)
T ss_dssp CSSBCSSSSS
T ss_pred eecccCcCCC
Confidence 4589999883
No 33
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=25.36 E-value=41 Score=23.38 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=13.7
Q ss_pred CCCCCCHHHHH-HHHHHHH
Q 035253 29 DPELGSPEELA-KIEKARE 46 (69)
Q Consensus 29 Dp~~GtpEEra-~VE~aR~ 46 (69)
||..||+||.. -|++|.+
T Consensus 70 ~~~~Gt~~df~~lv~~aH~ 88 (496)
T 4gqr_A 70 CTRSGNEDEFRNMVTRCNN 88 (496)
T ss_dssp CBTTBCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 67899999985 4676665
No 34
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=24.59 E-value=17 Score=24.81 Aligned_cols=14 Identities=0% Similarity=-0.223 Sum_probs=11.8
Q ss_pred ccceeeeeeCCCCC
Q 035253 20 HVGRQVWEFDPELG 33 (69)
Q Consensus 20 ~vGRQ~WEFDp~~G 33 (69)
|.|.++|.||+...
T Consensus 189 Fkg~~Ywr~d~~~~ 202 (227)
T 3lp9_A 189 FKDDHYARVKVTPX 202 (227)
T ss_dssp EETTEEEEEECCSS
T ss_pred EECCEEEEEECCcc
Confidence 46999999998765
No 35
>1gqi_A Alpha-glucuronidase; (alpha-beta)8 barrel, glycoside hydrolase; 1.48A {Pseudomonas cellulosa} SCOP: c.1.8.10 d.92.2.2 PDB: 1gqj_A* 1gqk_A* 1gql_A* 1h41_A*
Probab=24.57 E-value=16 Score=30.25 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=28.8
Q ss_pred cceeeeeeCCCCCCHHHHHHHHHHHHHHhhcccccCcchhHHhh
Q 035253 21 VGRQVWEFDPELGSPEELAKIEKARENFHNHRFEKKQSADLLMR 64 (69)
Q Consensus 21 vGRQ~WEFDp~~GtpEEra~VE~aR~~F~~nRf~~k~ssDlLmR 64 (69)
-||=.| ||++ |+|++++ |=+|..|..+.--+..=.++||.
T Consensus 462 fGRLaW--np~l-~~~~Ia~-EW~~~Tf~~d~~~~~~v~~m~~~ 501 (708)
T 1gqi_A 462 FGRMAW--DHQI-SAATAAD-EWLRMTFSNQPAFIEPVKQMMLV 501 (708)
T ss_dssp HHHHHH--CTTC-CHHHHHH-HHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHhhc--CCCC-CHHHHHH-HHHHhhcCCCHHHHHHHHHHHHh
Confidence 499999 9996 6888765 77788887655555555666654
No 36
>3oc5_A Toxin coregulated pilus biosynthesis protein F; multidomain protein, immunoglobulin-like (IG-like) fold, CEL adhesion; 2.40A {Vibrio cholerae}
Probab=23.99 E-value=28 Score=26.41 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=11.4
Q ss_pred eecCCccceeeeeeCCC
Q 035253 15 RTLNNHVGRQVWEFDPE 31 (69)
Q Consensus 15 ~S~Nn~vGRQ~WEFDp~ 31 (69)
.-+||+.|.++|+|-.+
T Consensus 258 h~s~n~~Gk~i~~~stn 274 (318)
T 3oc5_A 258 QPSNNLTGKKLYNVSTN 274 (318)
T ss_dssp CC---CCSEEEEEEECC
T ss_pred ccccCCCccceEEEecC
Confidence 34799999999999654
No 37
>2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A*
Probab=23.79 E-value=65 Score=22.56 Aligned_cols=33 Identities=18% Similarity=0.053 Sum_probs=23.2
Q ss_pred ecCCccceeeeeeCCCCCCHHHHHHHHHHHHHHhhc
Q 035253 16 TLNNHVGRQVWEFDPELGSPEELAKIEKARENFHNH 51 (69)
Q Consensus 16 S~Nn~vGRQ~WEFDp~~GtpEEra~VE~aR~~F~~n 51 (69)
-++...++..|.|. -|++|+++|+.|=+.|...
T Consensus 15 ~~~~~~~~~~~~~~---lt~~e~~ei~~a~~~~~~~ 47 (358)
T 2wbq_A 15 DSVATPVRPWSEFR---LTPAEAAAAAALAARCAQR 47 (358)
T ss_dssp ------CCSSEEEE---CCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCceEEE---cCHHHHHHHHHHHHHhhcc
Confidence 34445677799997 5899999999999999743
No 38
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=23.18 E-value=64 Score=16.49 Aligned_cols=28 Identities=14% Similarity=0.514 Sum_probs=14.6
Q ss_pred ceeeeecCCCcceeecCCccceeeeeeCCCC
Q 035253 2 WKLKIAEGGNAWLRTLNNHVGRQVWEFDPEL 32 (69)
Q Consensus 2 WkLKiaegg~p~L~S~Nn~vGRQ~WEFDp~~ 32 (69)
|..++...|.+|.. |-.-+.-+|| ||..
T Consensus 12 We~~~~~~G~~Yy~--nh~t~~ttw~-~Pr~ 39 (40)
T 2ysf_A 12 WEMRFTVDGIPYFV--DHNRRTTTYI-DPRT 39 (40)
T ss_dssp EEEEECTTCCEEEE--ETTTCCEESS-CTTT
T ss_pred cEEEEcCCCCEEEE--ECCCCcEecC-CCCC
Confidence 55556544555543 4444556664 4543
No 39
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=23.11 E-value=51 Score=20.18 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhcccccCcchhHHhh
Q 035253 35 PEELAKIEKARENFHNHRFEKKQSADLLMR 64 (69)
Q Consensus 35 pEEra~VE~aR~~F~~nRf~~k~ssDlLmR 64 (69)
.+-|..||++|.+-.-+|-.+-.++--|+.
T Consensus 16 ~q~rk~VeQLr~Ea~i~RikVSqaaadL~~ 45 (77)
T 3v5w_G 16 AQARKLVEQLKMEANIDRIKVSKAAADLMA 45 (77)
T ss_dssp HHHHHHHHHHHHHHSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 466789999999999999988666555543
No 40
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=23.08 E-value=23 Score=26.99 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=11.7
Q ss_pred ccceeeeeeCCCCCCH
Q 035253 20 HVGRQVWEFDPELGSP 35 (69)
Q Consensus 20 ~vGRQ~WEFDp~~Gtp 35 (69)
|.|.|.|+||+..++.
T Consensus 203 FkG~~y~rfd~~~~~v 218 (460)
T 1qhu_A 203 FQGNQFLRFNPVSGEV 218 (460)
T ss_dssp EETTEEEEECTTTCCC
T ss_pred EECCEEEEEcCccCcc
Confidence 4588888998876543
No 41
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=22.69 E-value=71 Score=23.42 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=19.6
Q ss_pred CcceeecCCccceeeeeeCCCC---------CCHHHHHHH
Q 035253 11 NAWLRTLNNHVGRQVWEFDPEL---------GSPEELAKI 41 (69)
Q Consensus 11 ~p~L~S~Nn~vGRQ~WEFDp~~---------GtpEEra~V 41 (69)
-|+++++|+ ..+|.+|... .||++..+-
T Consensus 116 ~p~~~~tng---~~~~~~D~~~~~~~~~~~~~~~~~l~~~ 152 (590)
T 3h1t_A 116 LKFAYSTNG---HEILEFDYTTGEEQLLSRFPTPDELFKR 152 (590)
T ss_dssp CSEEEEECS---SCEEEEETTTCCEEEESSCCCHHHHHHH
T ss_pred CCEEEEecC---cEEEEEeCCCCCccccCccCCHHHHHHH
Confidence 489999996 4677888543 467776543
No 42
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol phosphate kinase, transferase; 2.90A {Arabidopsis thaliana}
Probab=22.59 E-value=41 Score=23.67 Aligned_cols=14 Identities=36% Similarity=0.776 Sum_probs=10.3
Q ss_pred cceeeeeeCCCCCCHHH
Q 035253 21 VGRQVWEFDPELGSPEE 37 (69)
Q Consensus 21 vGRQ~WEFDp~~GtpEE 37 (69)
+|+++| ||+| |+|-
T Consensus 90 mG~Rt~--~~~a-s~eK 103 (275)
T 4frf_A 90 MGSRTW--YPDA-SEEY 103 (275)
T ss_dssp ECSSSC--CTTS-CHHH
T ss_pred eecEEc--CCCC-CHHH
Confidence 699998 8886 3543
No 43
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=22.43 E-value=25 Score=19.56 Aligned_cols=11 Identities=27% Similarity=0.848 Sum_probs=8.3
Q ss_pred eeeCCCCCCHH
Q 035253 26 WEFDPELGSPE 36 (69)
Q Consensus 26 WEFDp~~GtpE 36 (69)
|.|||+.|.|+
T Consensus 10 yvYd~~~Gdp~ 20 (52)
T 1yk4_A 10 YIYDEDEGDPD 20 (52)
T ss_dssp CEEETTTCBGG
T ss_pred eEECCCcCCcc
Confidence 78999876654
No 44
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=22.43 E-value=36 Score=17.63 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHH
Q 035253 33 GSPEELAKIEKARENF 48 (69)
Q Consensus 33 GtpEEra~VE~aR~~F 48 (69)
-|+|+.++.|.+|++.
T Consensus 11 l~~eDi~e~E~~rke~ 26 (29)
T 3hym_A 11 LKLDDIEEFENIRKDL 26 (29)
T ss_dssp CCSGGGHHHHHHHHHC
T ss_pred ecHHHHHHHHHHHHHH
Confidence 4789999999999874
No 45
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=22.14 E-value=30 Score=23.60 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=10.0
Q ss_pred ccceeeeeeCCC
Q 035253 20 HVGRQVWEFDPE 31 (69)
Q Consensus 20 ~vGRQ~WEFDp~ 31 (69)
|.|+|+|.||..
T Consensus 78 FkG~~yw~~~~~ 89 (219)
T 1hxn_A 78 IQDTKVYVFLTK 89 (219)
T ss_dssp EETTEEEEEECS
T ss_pred ecCCEEEEEeCC
Confidence 569999999864
No 46
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=22.12 E-value=40 Score=20.13 Aligned_cols=29 Identities=3% Similarity=0.103 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhcccccCcchhHHhh
Q 035253 36 EELAKIEKARENFHNHRFEKKQSADLLMR 64 (69)
Q Consensus 36 EEra~VE~aR~~F~~nRf~~k~ssDlLmR 64 (69)
.-+.+||++|.+-..+|-++-.++.-|+.
T Consensus 21 ~lr~~veqLr~el~~~RikVS~aa~~L~~ 49 (73)
T 1got_G 21 KLKMEVDQLKKEVTLERMLVSKCCEEFRD 49 (73)
T ss_dssp HHHHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCchhhHHHHHHHHHH
Confidence 44678999999999999888776666654
No 47
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=21.96 E-value=60 Score=23.22 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=15.7
Q ss_pred eeeeCCCCCCHHHHHH-HHHHHH
Q 035253 25 VWEFDPELGSPEELAK-IEKARE 46 (69)
Q Consensus 25 ~WEFDp~~GtpEEra~-VE~aR~ 46 (69)
.-.=||..||+||..+ |++|++
T Consensus 69 y~~vdp~~Gt~~dfk~Lv~~aH~ 91 (549)
T 4aie_A 69 YEAIDPQYGTMADMDELISKAKE 91 (549)
T ss_dssp EEEECTTTCCHHHHHHHHHHHHH
T ss_pred CCCcCcccCCHHHHHHHHHHHHH
Confidence 3455899999998754 666654
No 48
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=21.68 E-value=91 Score=15.73 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=10.2
Q ss_pred CHHHHHH---------HHHHHHHHh
Q 035253 34 SPEELAK---------IEKARENFH 49 (69)
Q Consensus 34 tpEEra~---------VE~aR~~F~ 49 (69)
||+||.. |..||+.|-
T Consensus 2 s~~eRq~~Lq~Rk~~mi~~ARrryl 26 (28)
T 3h8k_B 2 SADERQRMLVQRKDELLQQARKRFL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777643 566777664
No 49
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=21.32 E-value=27 Score=24.84 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=22.2
Q ss_pred cceeeeeeCCCCCCHH--------HH------------HHHHHHHHHHhhc
Q 035253 21 VGRQVWEFDPELGSPE--------EL------------AKIEKARENFHNH 51 (69)
Q Consensus 21 vGRQ~WEFDp~~GtpE--------Er------------a~VE~aR~~F~~n 51 (69)
-+|++|-||...|-|| +. ..++.||++|.+.
T Consensus 134 ~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 134 RDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp CSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 4899999998877653 11 1378899999863
No 50
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=21.03 E-value=71 Score=20.95 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHHhhc
Q 035253 31 ELGSPEELAKIEKARENFHNH 51 (69)
Q Consensus 31 ~~GtpEEra~VE~aR~~F~~n 51 (69)
..+.+++-+.+.+|.+||.+|
T Consensus 39 ~~~g~~~f~Ra~RAH~N~lE~ 59 (156)
T 3pcv_A 39 LTTGPPEFERVYRAQVNCSEY 59 (156)
T ss_dssp CCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhHHH
Confidence 444467778888999998876
No 51
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.93 E-value=22 Score=19.82 Aligned_cols=11 Identities=45% Similarity=1.223 Sum_probs=8.2
Q ss_pred eeeCCCCCCHH
Q 035253 26 WEFDPELGSPE 36 (69)
Q Consensus 26 WEFDp~~GtpE 36 (69)
|.|||..|.|+
T Consensus 11 yvYd~~~Gdp~ 21 (52)
T 1e8j_A 11 YEYDPAKGDPD 21 (52)
T ss_dssp CCCCTTTCCTT
T ss_pred eEEcCCcCCcc
Confidence 67898887654
No 52
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=20.65 E-value=79 Score=17.03 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 035253 31 ELGSPEELAKIEKARENFHN 50 (69)
Q Consensus 31 ~~GtpEEra~VE~aR~~F~~ 50 (69)
+..||||.|+--.+=++|-+
T Consensus 10 ~dA~pEela~Y~~~Lr~YiN 29 (36)
T 1bba_A 10 DNATPEQMAQYAAELRRYIN 29 (36)
T ss_dssp SCSSTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 45789999998777777654
No 53
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=20.45 E-value=73 Score=21.74 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 035253 31 ELGSPEELAKIEKARENFHN 50 (69)
Q Consensus 31 ~~GtpEEra~VE~aR~~F~~ 50 (69)
+-=++||.+.+++.|+.|..
T Consensus 54 ~qf~~eEl~~~~~fr~k~~~ 73 (161)
T 3f4m_A 54 GSFGPSELALATRFRQKLRQ 73 (161)
T ss_dssp TCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 34589999999999998865
No 54
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=20.42 E-value=94 Score=19.27 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=17.6
Q ss_pred eCCCCCCHHHHH-----HHHHHHHHHhhcc
Q 035253 28 FDPELGSPEELA-----KIEKARENFHNHR 52 (69)
Q Consensus 28 FDp~~GtpEEra-----~VE~aR~~F~~nR 52 (69)
.+.|.||||=.. .|..+..+|..|+
T Consensus 21 ~~~DTGS~EVQIA~LT~rI~~L~~Hlk~hk 50 (93)
T 3ulw_A 21 KPGDTGSTEVQVALLTARIAELTEHLKIYK 50 (93)
T ss_dssp STTCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 367799999874 4566667776665
Done!