BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035256
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22860|RL38_ARATH 60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3
SV=1
Length = 69
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/69 (94%), Positives = 68/69 (98%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69
>sp|P46291|RL38_SOLLC 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3
SV=1
Length = 69
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/69 (89%), Positives = 67/69 (97%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MPKQIHEIKDFLLTARRKDAR+VKIK+++D+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1 MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69
>sp|Q95V84|RL38_BRABE 60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3
SV=1
Length = 70
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 65/69 (94%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MPKQIHEIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1 MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL+V++L
Sbjct: 61 PPGLAVKEL 69
>sp|Q9JJI8|RL38_MOUSE 60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=2 SV=3
Length = 70
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 64/69 (92%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL+V+DL
Sbjct: 61 PPGLAVKDL 69
>sp|P63174|RL38_RAT 60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2
Length = 70
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 64/69 (92%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL+V++L
Sbjct: 61 PPGLAVKEL 69
>sp|P63173|RL38_HUMAN 60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2
Length = 70
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 64/69 (92%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL+V++L
Sbjct: 61 PPGLAVKEL 69
>sp|Q32PB9|RL38_BOVIN 60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4
Length = 70
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 64/69 (92%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL+V++L
Sbjct: 61 PPGLAVKEL 69
>sp|Q8HXB9|RL38_MACFA 60S ribosomal protein L38 OS=Macaca fascicularis GN=RPL38 PE=3
SV=3
Length = 70
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 63/68 (92%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60
Query: 61 PPGLSVQD 68
PPGL+V++
Sbjct: 61 PPGLAVKE 68
>sp|Q4PMD1|RL38_IXOSC 60S ribosomal protein L38 OS=Ixodes scapularis GN=RpL38 PE=3 SV=1
Length = 71
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 62/70 (88%), Gaps = 1/70 (1%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQS 59
MPKQ+ EIK+FLLTARRKDA+SVKIK++ D V KFKVRCSKYLYT+ V + EKA+KLKQS
Sbjct: 1 MPKQLKEIKEFLLTARRKDAKSVKIKKNPDNVTKFKVRCSKYLYTIVVTEKEKAEKLKQS 60
Query: 60 LPPGLSVQDL 69
LPPGL V++L
Sbjct: 61 LPPGLQVKEL 70
>sp|Q56FC8|RL38_LYSTE 60S ribosomal protein L38 OS=Lysiphlebus testaceipes GN=RpL38
PE=3 SV=1
Length = 76
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 62/69 (89%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I EIKDFL+TARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSL
Sbjct: 1 MPREIKEIKDFLVTARRKDAKSVKIKKNAENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL V+++
Sbjct: 61 PPGLQVKEV 69
>sp|Q4GX87|RL38_JULON 60S ribosomal protein L38 OS=Julodis onopordi GN=RpL38 PE=3 SV=1
Length = 70
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 61/69 (88%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I EIKDFLL ARRKDA+SVKIK++ D VKFKVRCS++LYTL + D EKA+KLKQSL
Sbjct: 1 MPREITEIKDFLLKARRKDAKSVKIKKNPDNVKFKVRCSRFLYTLVITDKEKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL V+++
Sbjct: 61 PPGLQVKEV 69
>sp|Q1HRT4|RL38_AEDAE 60S ribosomal protein L38 OS=Aedes aegypti GN=RpL38 PE=3 SV=1
Length = 70
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 60/69 (86%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I E+KDFL+ ARRKDAR+VKIK++ + KFK+RCS+YLYTL V D EKA+KLKQSL
Sbjct: 1 MPQEIKEVKDFLIKARRKDARAVKIKKNENNTKFKIRCSRYLYTLVVQDKEKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL V+++
Sbjct: 61 PPGLQVKEV 69
>sp|Q962S5|RL38_SPOFR 60S ribosomal protein L38 OS=Spodoptera frugiperda GN=RpL38 PE=3
SV=1
Length = 70
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 61/69 (88%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I +IKDFLL ARRKDA+SVKIK+++ VKFKVRCS++LYTL + D EKA+KLKQSL
Sbjct: 1 MPREIKDIKDFLLKARRKDAKSVKIKKNQQNVKFKVRCSRFLYTLVITDKEKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL V+++
Sbjct: 61 PPGLQVKEV 69
>sp|Q4GX86|RL38_TIMBA 60S ribosomal protein L38 OS=Timarcha balearica GN=RpL38 PE=3
SV=1
Length = 70
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 61/69 (88%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP+++ EIK+FLLTARRKDA+SVKIK++ + KFKVRCS++LYTL + D EKA+KLKQSL
Sbjct: 1 MPRELTEIKEFLLTARRKDAKSVKIKKNPENTKFKVRCSRFLYTLVITDREKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL V+++
Sbjct: 61 PPGLQVKEV 69
>sp|O17570|RL38_CAEEL 60S ribosomal protein L38 OS=Caenorhabditis elegans GN=rpl-38
PE=3 SV=2
Length = 70
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 59/69 (85%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MPK+I EIKDFL+ ARRKDA+SVKIK++ + KFKVRC+ YLYTL V D +KA+KLKQSL
Sbjct: 1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPG+ V++L
Sbjct: 61 PPGIQVKEL 69
>sp|Q7Q0U1|RL38_ANOGA 60S ribosomal protein L38 OS=Anopheles gambiae GN=RpL38 PE=3 SV=2
Length = 70
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 59/69 (85%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I E+KDFL+ ARRKDAR+VKIK++ KFK+RCS+YLYTL V D EKA+KLKQSL
Sbjct: 1 MPQEIKEVKDFLIKARRKDARAVKIKKNETNTKFKIRCSRYLYTLVVKDMEKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL V+++
Sbjct: 61 PPGLQVKEV 69
>sp|Q6F450|RL38_PLUXY 60S ribosomal protein L38 OS=Plutella xylostella GN=RpL38 PE=3
SV=1
Length = 70
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 61/69 (88%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I +IKDFLL ARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSL
Sbjct: 1 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL V+++
Sbjct: 61 PPGLQVKEV 69
>sp|A7L6A2|RL38_ARTSF 60S ribosomal protein L38 OS=Artemia franciscana GN=RPL38 PE=3
SV=1
Length = 70
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 60/69 (86%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MPKQ+ EIKDFL+ ARRKDA+S KIK++ D KFK+RCS++LYTL + DSEKA+KLK+SL
Sbjct: 1 MPKQLMEIKDFLIKARRKDAKSCKIKKNPDNTKFKLRCSRFLYTLVITDSEKAEKLKKSL 60
Query: 61 PPGLSVQDL 69
PPGL V++L
Sbjct: 61 PPGLQVKEL 69
>sp|Q5UAP8|RL38_BOMMO 60S ribosomal protein L38 OS=Bombyx mori GN=RpL38 PE=3 SV=1
Length = 70
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 61/69 (88%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSL
Sbjct: 1 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL V+++
Sbjct: 61 PPGLQVKEV 69
>sp|A2I469|RL38_MACHI 60S ribosomal protein L38 OS=Maconellicoccus hirsutus GN=RpL38
PE=3 SV=1
Length = 78
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 60/69 (86%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I EIK+FL+ ARRKDA+SVKIK++ VKFKVRCS++LYTL + D EKA+KLKQSL
Sbjct: 1 MPREIKEIKEFLIKARRKDAKSVKIKKNPTNVKFKVRCSRFLYTLVITDKEKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL V+++
Sbjct: 61 PPGLQVKEI 69
>sp|Q5MGL3|RL38_LONON 60S ribosomal protein L38 OS=Lonomia obliqua GN=RpL38 PE=3 SV=1
Length = 70
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 61/69 (88%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I +IKDFLL ARRKDA+SV+IK++ + VKFKVRCS++LYTL + D EKA+KLKQSL
Sbjct: 1 MPREIKDIKDFLLKARRKDAKSVEIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPGL V+++
Sbjct: 61 PPGLQVKEV 69
>sp|O61570|RL38_OSTOS 60S ribosomal protein L38 OS=Ostertagia ostertagi GN=rpl-38 PE=3
SV=1
Length = 70
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 58/69 (84%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MPKQI EIKDFL+ ARRKDA+ VKIK++ VKFKVRCS+YL+TL V D +KA+KLKQSL
Sbjct: 1 MPKQITEIKDFLVLARRKDAKIVKIKKNSLNVKFKVRCSRYLFTLVVNDKDKAEKLKQSL 60
Query: 61 PPGLSVQDL 69
PPG+ V +L
Sbjct: 61 PPGIQVIEL 69
>sp|Q6XIM7|RL38_DROYA 60S ribosomal protein L38 OS=Drosophila yakuba GN=RpL38 PE=3 SV=1
Length = 70
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 57/69 (82%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I E+KDFL ARR DAR+VKIK++ KFK+RCS++LYTL V D EKADK+KQSL
Sbjct: 1 MPREIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSL 60
Query: 61 PPGLSVQDL 69
PPGL V+++
Sbjct: 61 PPGLQVKEV 69
>sp|Q9W5N2|RL38_DROME 60S ribosomal protein L38 OS=Drosophila melanogaster GN=RpL38
PE=3 SV=1
Length = 70
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 57/69 (82%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
MP++I E+KDFL ARR DAR+VKIK++ KFK+RCS++LYTL V D EKADK+KQSL
Sbjct: 1 MPREIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSL 60
Query: 61 PPGLSVQDL 69
PPGL V+++
Sbjct: 61 PPGLQVKEV 69
>sp|A6N9N3|RL38_ORNPR 60S ribosomal protein L38 OS=Ornithodoros parkeri GN=RpL38 PE=3
SV=1
Length = 71
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 62/70 (88%), Gaps = 1/70 (1%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQS 59
MPKQ+ EIKDFLLTARRKDA+SV+IK++ D V KFKVRCSKYLYT+ V + EKA+KLKQS
Sbjct: 1 MPKQLKEIKDFLLTARRKDAKSVRIKKNPDNVTKFKVRCSKYLYTIVVKEKEKAEKLKQS 60
Query: 60 LPPGLSVQDL 69
LPPGL V++L
Sbjct: 61 LPPGLQVKEL 70
>sp|Q09JT4|RL38_ARGMO 60S ribosomal protein L38 OS=Argas monolakensis GN=RpL38 PE=3
SV=1
Length = 71
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 62/70 (88%), Gaps = 1/70 (1%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQS 59
MPKQ+ EIKDFLLTARRKDA+SV+IK++ D V KFKVRCSKYLYT+ V + EKA+KLKQS
Sbjct: 1 MPKQLKEIKDFLLTARRKDAKSVRIKKNPDNVTKFKVRCSKYLYTIVVKEKEKAEKLKQS 60
Query: 60 LPPGLSVQDL 69
LPPGL V++L
Sbjct: 61 LPPGLQVKEL 70
>sp|Q9USR7|RL38A_SCHPO 60S ribosomal protein L38-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl38a PE=3 SV=1
Length = 74
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDV-VKFKVRCSKYLYTLCVFDSEKADKLKQS 59
MP+QI +IK FL ARRKDA S +IK++ + VKFK+RCSKYLYTL V D++KA+KL+QS
Sbjct: 1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60
Query: 60 LPPGLSVQDL 69
LPP L+V ++
Sbjct: 61 LPPDLTVTEV 70
>sp|Q09900|RL38B_SCHPO 60S ribosomal protein L38-2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl38b PE=3 SV=1
Length = 74
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 56/70 (80%), Gaps = 1/70 (1%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQS 59
MP+Q+ +IK FL A R DA S ++K++++ VKFK+RCS+YLYTL V D++KA+KL+QS
Sbjct: 1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60
Query: 60 LPPGLSVQDL 69
LPP L+V ++
Sbjct: 61 LPPALTVTEV 70
>sp|Q55GJ7|RL38_DICDI 60S ribosomal protein L38 OS=Dictyostelium discoideum GN=rpl38
PE=3 SV=1
Length = 75
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKR-SRDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 59
MP++I EIKDFL+T R KDA+ ++IK+ +++ KFKVRC +YLYTL V D+ KA KL Q+
Sbjct: 1 MPREIREIKDFLVTVRNKDAKEIRIKKVGKNLTKFKVRCGRYLYTLRVADNAKAAKLMQT 60
Query: 60 LPPGL 64
LPP +
Sbjct: 61 LPPSI 65
>sp|Q9C2B9|RL38_NEUCR 60S ribosomal protein L38 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rpl-38 PE=3 SV=1
Length = 80
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 54/71 (76%), Gaps = 2/71 (2%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDV--VKFKVRCSKYLYTLCVFDSEKADKLKQ 58
MP++I +IK F+ RRKDA + +IK+++ +KFKVRC KYLYTL + DS+KA+KLK
Sbjct: 1 MPQEIGDIKKFIEICRRKDASAARIKKNKATQQIKFKVRCQKYLYTLVLKDSDKAEKLKA 60
Query: 59 SLPPGLSVQDL 69
SLPP L++ D+
Sbjct: 61 SLPPSLTIADV 71
>sp|Q4N921|RL38_THEPA 60S ribosomal protein L38 OS=Theileria parva GN=RPL38 PE=3 SV=1
Length = 79
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 5/69 (7%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKI--KRSRD---VVKFKVRCSKYLYTLCVFDSEKADK 55
MPK++ E+KD+L +R DARSV + K+S+ KFKVRCS+YLYT V + KA K
Sbjct: 1 MPKELKELKDYLSVLKRPDARSVVVYKKKSKGGLLSTKFKVRCSRYLYTFSVPNQVKAAK 60
Query: 56 LKQSLPPGL 64
++ ++P L
Sbjct: 61 VEATIPSHL 69
>sp|P49167|RL38_YEAST 60S ribosomal protein L38 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL38 PE=1 SV=1
Length = 78
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDV---------VKFKVRCSKYLYTLCVFDSE 51
M ++I +IK FL RR D ++ +K ++ + KFKVR S LYTL + D+
Sbjct: 1 MAREITDIKQFLELTRRADVKTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAG 60
Query: 52 KADKLKQSLPPGLSVQDL 69
KA KL QSLPP L V L
Sbjct: 61 KAKKLIQSLPPTLKVNRL 78
>sp|Q4UGN5|RL38_THEAN 60S ribosomal protein L38 OS=Theileria annulata GN=RPL38 PE=3
SV=1
Length = 79
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKI--KRSRDVV---KFKVRCSKYLYTLCVFDSEKADK 55
MPK++ ++KD+L +R DA+SV + K+S+ + KFKVRCS+YLYT V + KA K
Sbjct: 1 MPKELKDLKDYLNVLKRPDAKSVVVYKKKSKGGLLSTKFKVRCSRYLYTFSVPNQVKAAK 60
Query: 56 LKQSLPPGL 64
++ ++P L
Sbjct: 61 VEATIPSNL 69
>sp|Q22SV3|RL38_TETTS 60S ribosomal protein L38 OS=Tetrahymena thermophila (strain
SB210) GN=RPL38 PE=1 SV=2
Length = 89
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 1 MPKQIHEIKDFL-LTARRKDA-------RSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEK 52
MPK+I +IK F+ L KD + V +K ++ + KFK+R KYLYT D +
Sbjct: 1 MPKEITDIKKFMKLWQNNKDTPATAGAKKVVYVKTNKRITKFKLRGKKYLYTFKTADPKI 60
Query: 53 ADKLKQSLPPGLS 65
A +K ++P S
Sbjct: 61 AKGIKDAIPATYS 73
>sp|Q9YFR9|RL38_AERPE 50S ribosomal protein L38E OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpl38e PE=3 SV=1
Length = 67
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 58
MP ++ +F+ R A ++KR +DVVK K R +YLYTL V ++A+ L+Q
Sbjct: 1 MPVELKSFDEFVKVVER--AVECRVKRGKDVVKIKARTKRYLYTLKVPPEKEAEVLEQ 56
>sp|Q4V909|CCD22_DANRE Coiled-coil domain-containing protein 22 OS=Danio rerio GN=ccdc22
PE=2 SV=1
Length = 639
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 18 KDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV 66
+D +SVK S +V+ VRC L V D + L SLPPG+S
Sbjct: 21 EDVQSVKQFTSELIVEAVVRC------LRVIDPAVGNGLSHSLPPGMSA 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,902,232
Number of Sequences: 539616
Number of extensions: 623556
Number of successful extensions: 1245
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1201
Number of HSP's gapped (non-prelim): 37
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)