Query 035256
Match_columns 69
No_of_seqs 101 out of 172
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 17:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_n 60S ribosomal protein L 100.0 2.9E-45 9.8E-50 227.7 3.8 69 1-69 1-69 (69)
2 3izc_n 60S ribosomal protein R 100.0 1.8E-44 6.3E-49 228.5 5.1 69 1-69 1-78 (78)
3 4a18_P RPL38, ribosomal protei 100.0 9.1E-43 3.1E-47 225.2 7.3 69 1-69 1-77 (89)
4 3u5e_d L34, YL28, 60S ribosoma 71.9 7.1 0.00024 25.4 4.6 44 2-47 30-94 (113)
5 4a17_W RPL31, 60S ribosomal pr 54.6 21 0.00072 23.1 4.4 44 2-47 29-93 (111)
6 1wh9_A 40S ribosomal protein S 43.2 38 0.0013 20.5 4.0 34 7-40 11-45 (92)
7 1vq8_X 50S ribosomal protein L 34.7 25 0.00084 21.9 2.2 40 2-41 28-78 (92)
8 2l82_A Designed protein OR32; 32.5 41 0.0014 22.8 3.2 24 7-30 91-114 (162)
9 3j20_L 30S ribosomal protein S 28.8 46 0.0016 20.5 2.8 36 31-67 61-97 (102)
10 3l6i_A Uncharacterized lipopro 28.0 17 0.00059 24.5 0.7 25 42-67 139-163 (181)
11 2zqe_A MUTS2 protein; alpha/be 25.4 73 0.0025 18.6 3.1 26 5-30 18-43 (83)
12 3u5c_U 40S ribosomal protein S 25.3 79 0.0027 20.2 3.5 58 9-67 39-115 (121)
13 2coc_A FYVE, rhogef and PH dom 25.0 72 0.0025 19.2 3.1 28 32-59 73-100 (112)
14 1z5s_D RAN-binding protein 2; 25.0 28 0.00096 21.8 1.2 23 42-64 7-29 (83)
15 1gxl_A SMC, chromosome segrega 22.7 81 0.0028 19.8 3.2 25 43-67 144-168 (213)
16 3l51_B Structural maintenance 22.5 60 0.0021 20.7 2.5 24 44-67 119-142 (166)
17 2lcd_A AT-rich interactive dom 25.8 21 0.00073 23.5 0.0 35 15-49 15-50 (118)
No 1
>3iz5_n 60S ribosomal protein L38 (L38E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_n
Probab=100.00 E-value=2.9e-45 Score=227.74 Aligned_cols=69 Identities=86% Similarity=1.351 Sum_probs=68.1
Q ss_pred CchhhhhHHHHHHHHhhcCCceEEEeeCCCeeeEEEeecCcEEEEEecChHHHHHhhhcCCCCCceecC
Q 035256 1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 69 (69)
Q Consensus 1 MPkei~diK~FL~~arrkdAk~v~IKk~k~~tKFKvRcsryLYTLvv~d~~KAeKl~qSLPp~l~v~~~ 69 (69)
||+||+|||+||++|||+||+||+||+|+++||||||||||||||+|+|++||+||+|||||||+++|+
T Consensus 1 MPkei~~ik~Fl~~arrkdAksv~IKkn~~~~KfKvRcsryLYTLvv~D~eKAeKl~qslPp~l~v~~~ 69 (69)
T 3iz5_n 1 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLPPGLTVQEV 69 (69)
T ss_dssp CCTHHHHHHHHHHHHSSSCCCCEECCCCSSCCCCEECSSSCCCCCSSCCHHHHHHTTTSSSCCCCCCCC
T ss_pred CChhHHHHHHHHHHHhhCCCeEEEEEecCCceEEEEEecCceEEEEeCCHHHHHHHHhcCCCCceeeeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999986
No 2
>3izc_n 60S ribosomal protein RPL38 (L38E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_n 3u5e_k 3u5i_k 4b6a_k
Probab=100.00 E-value=1.8e-44 Score=228.50 Aligned_cols=69 Identities=48% Similarity=0.697 Sum_probs=67.7
Q ss_pred CchhhhhHHHHHHHHhhcCCceEEEeeCC---------CeeeEEEeecCcEEEEEecChHHHHHhhhcCCCCCceecC
Q 035256 1 MPKQIHEIKDFLLTARRKDARSVKIKRSR---------DVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 69 (69)
Q Consensus 1 MPkei~diK~FL~~arrkdAk~v~IKk~k---------~~tKFKvRcsryLYTLvv~d~~KAeKl~qSLPp~l~v~~~ 69 (69)
||+||+|||+||++|||+||+||+||+|+ ++||||||||||||||+|+|++||+||+|||||||+++++
T Consensus 1 MPkei~dIK~Fl~~arrkDAksv~IKknk~~~~~g~~~~~tKFKvRcsryLYTLvv~D~~KAeKL~qSLPp~l~v~~~ 78 (78)
T 3izc_n 1 MAREITDIKQFLELTRRADVKTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAGKAKKLIQSLPPTLKVNRL 78 (78)
T ss_dssp CCTHHHHHHHHHHHHCCSCEEEEEEECCCCCCTTTSSCCCCEEEEEESSCCCCCSSCSHHHHHHHHHSSSCCCCCCCC
T ss_pred CChhHHHHHHHHHHHhhCCCeeEEEEeccccccccccccceEEEEEeccceEEEEeCCHHHHHHHHhcCCCCceeecC
Confidence 99999999999999999999999999998 8999999999999999999999999999999999999885
No 3
>4a18_P RPL38, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_P 4a1b_P 4a1d_P
Probab=100.00 E-value=9.1e-43 Score=225.19 Aligned_cols=69 Identities=32% Similarity=0.557 Sum_probs=61.0
Q ss_pred CchhhhhHHHHHHHHhhcCCceE--------EEeeCCCeeeEEEeecCcEEEEEecChHHHHHhhhcCCCCCceecC
Q 035256 1 MPKQIHEIKDFLLTARRKDARSV--------KIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 69 (69)
Q Consensus 1 MPkei~diK~FL~~arrkdAk~v--------~IKk~k~~tKFKvRcsryLYTLvv~d~~KAeKl~qSLPp~l~v~~~ 69 (69)
||+||+||||||++|||+||+|| +||+|+++||||||||||||||+|+|++||++|+|||||||.++++
T Consensus 1 MPkqI~dIK~FL~~arrkDaksv~~~kkk~~~IKkn~~~tKFKvRcsryLYTLvv~D~~KAeKlkqSLPp~l~v~~i 77 (89)
T 4a18_P 1 MPKEITDIKKFMKLWQNNKDTPATAGAKKVVYVKTNKRITKFKLRGKKYLYTFKTADPKIAKGIKDAIPATYSKIEI 77 (89)
T ss_dssp -CEEESSHHHHHHHHHC----------CCEEEEEECSSCEEEEEECSSCEEEEEECSHHHHHHHHHTCCSSSEEEEC
T ss_pred CChhHHHHHHHHHHHHccCCceeeeccccceeEEecCCceEEEEEecCceEEEEeCCHHHHHHHHhcCCCCceEEEc
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999885
No 4
>3u5e_d L34, YL28, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_M 2ww9_M 3izc_g 3izs_g 2wwb_M 3o5h_a 3o58_a 3u5i_d 4b6a_d 1s1i_W 3jyw_W
Probab=71.89 E-value=7.1 Score=25.40 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=30.3
Q ss_pred chhhhhHHHHHHHHhhcCCceEEEee--C-------CCe--eeEEEeecC----------cEEEEEe
Q 035256 2 PKQIHEIKDFLLTARRKDARSVKIKR--S-------RDV--VKFKVRCSK----------YLYTLCV 47 (69)
Q Consensus 2 Pkei~diK~FL~~arrkdAk~v~IKk--~-------k~~--tKFKvRcsr----------yLYTLvv 47 (69)
|+-+++|++|+..... +..|+|-. | -.+ -+..||.|| -||||+-
T Consensus 30 prAlkeIrkFa~K~Mg--t~dV~ID~~LNk~vWakGirnvP~rIrVrlsRk~nededs~~klytlvt 94 (113)
T 3u5e_d 30 PRAVKEIKKFAKLHMG--TDDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRNEEEDAKNPLFSYVE 94 (113)
T ss_dssp HHHHHHHHHHHHHHHC--CSCEEECHHHHHHHHTTCTTCCCSEEEEEEEEEECCSSCCSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC--CCceEECcHHHHHHHhccccCCCceEEEEEEEecCCCCCCccccEEEEE
Confidence 7889999999877765 45677733 1 233 356667776 4899974
No 5
>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_W 4a1c_W 4a1e_W
Probab=54.56 E-value=21 Score=23.06 Aligned_cols=44 Identities=27% Similarity=0.374 Sum_probs=29.1
Q ss_pred chhhhhHHHHHHHHhhcCCceEEEee--C-------CCe--eeEEEeecC----------cEEEEEe
Q 035256 2 PKQIHEIKDFLLTARRKDARSVKIKR--S-------RDV--VKFKVRCSK----------YLYTLCV 47 (69)
Q Consensus 2 Pkei~diK~FL~~arrkdAk~v~IKk--~-------k~~--tKFKvRcsr----------yLYTLvv 47 (69)
|+.+++|+.|+.....- ..|+|-. | -.+ -+..||.|| -||||+-
T Consensus 29 prAlkeIrkFa~K~Mgt--~dV~ID~~LNk~vWakGirnvP~rIrVrlsRk~nededs~~klytlvt 93 (111)
T 4a17_W 29 PRAIREIVAIAKKTMGT--DDVRIDTELNKFIWSNGIRNIPRRVRVRLCKRKNEEEGAQSQFYTLVQ 93 (111)
T ss_dssp HHHHHHHHHHHHHHHCC--SCEEECHHHHHHHHTTCSSSCCSEEEEEEEEEECCCSSCSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHcCC--CceEECcHHHHHHHhccccCCCcEEEEEEEEecCCCCCCCCCcEEEEE
Confidence 78899999998777664 4677633 1 123 355566665 4899873
No 6
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=43.20 E-value=38 Score=20.52 Aligned_cols=34 Identities=12% Similarity=0.285 Sum_probs=27.2
Q ss_pred hHHHHHHHHh-hcCCceEEEeeCCCeeeEEEeecC
Q 035256 7 EIKDFLLTAR-RKDARSVKIKRSRDVVKFKVRCSK 40 (69)
Q Consensus 7 diK~FL~~ar-rkdAk~v~IKk~k~~tKFKvRcsr 40 (69)
.|++||..-- +.+...|.|.+..+.+..-+.++|
T Consensus 11 ~IR~~i~k~l~~aGis~IeIeR~~~~i~I~I~tar 45 (92)
T 1wh9_A 11 ELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATR 45 (92)
T ss_dssp HHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESC
T ss_pred HHHHHHHHHHHHCceeeEEEEECCCeEEEEEEeCC
Confidence 6889997544 456678999999999999888876
No 7
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Probab=34.68 E-value=25 Score=21.94 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=29.8
Q ss_pred chhhhhHHHHHHHHhhcCCceEEEee--CC-------Ce--eeEEEeecCc
Q 035256 2 PKQIHEIKDFLLTARRKDARSVKIKR--SR-------DV--VKFKVRCSKY 41 (69)
Q Consensus 2 Pkei~diK~FL~~arrkdAk~v~IKk--~k-------~~--tKFKvRcsry 41 (69)
|+-|.+|+.|+.....-+...|+|-. |+ .+ -+..||.||.
T Consensus 28 prAik~Irkfa~k~m~t~~~dVriD~~LNk~iW~rGir~vP~rIRVr~sR~ 78 (92)
T 1vq8_X 28 DKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARF 78 (92)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEECHHHHHHHTTTCSSCCCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcccEEECcHHHHHHHhcccCCCCceEEEEEEEE
Confidence 77899999999998888766888743 21 23 4777888875
No 8
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=32.54 E-value=41 Score=22.80 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.8
Q ss_pred hHHHHHHHHhhcCCceEEEeeCCC
Q 035256 7 EIKDFLLTARRKDARSVKIKRSRD 30 (69)
Q Consensus 7 diK~FL~~arrkdAk~v~IKk~k~ 30 (69)
-||+|++.|...+..-..+..|++
T Consensus 91 wikdfieeakergvevfvvynnkd 114 (162)
T 2l82_A 91 WIKDFIEEAKERGVEVFVVYNNKD 114 (162)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSC
T ss_pred HHHHHHHHHHhcCcEEEEEecCCC
Confidence 489999999999988888888875
No 9
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.80 E-value=46 Score=20.47 Aligned_cols=36 Identities=14% Similarity=0.336 Sum_probs=29.5
Q ss_pred eeeEEEeecCcEEEEEecChHHHHHhh-hcCCCCCcee
Q 035256 31 VVKFKVRCSKYLYTLCVFDSEKADKLK-QSLPPGLSVQ 67 (69)
Q Consensus 31 ~tKFKvRcsryLYTLvv~d~~KAeKl~-qSLPp~l~v~ 67 (69)
.-.|..|+-+-|..+ -.+++-++.|. -+||||..+.
T Consensus 61 reqfE~r~hkRlIdi-~~~~~~v~~l~~~~lp~GV~ve 97 (102)
T 3j20_L 61 FDRWELRVHKRLIDI-EADERAMRQIMRIRVPEDVTIE 97 (102)
T ss_dssp EEECCEEEEEEEEEE-EECHHHHHHHTTSCCCSSCEEE
T ss_pred hhheEEEEEEEEEEE-eCCHHHHHHHhcCcCCCCcEEE
Confidence 457999999999999 56788888876 6899998764
No 10
>3l6i_A Uncharacterized lipoprotein YCEB; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.01A {Escherichia coli}
Probab=27.96 E-value=17 Score=24.48 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=17.8
Q ss_pred EEEEEecChHHHHHhhhcCCCCCcee
Q 035256 42 LYTLCVFDSEKADKLKQSLPPGLSVQ 67 (69)
Q Consensus 42 LYTLvv~d~~KAeKl~qSLPp~l~v~ 67 (69)
+|||.- +.-+++.|..++++++.|+
T Consensus 139 VY~Ld~-~~~k~eal~k~~~k~i~Ve 163 (181)
T 3l6i_A 139 AYVLRE-DGSQGEAMAKKLAKGIEVK 163 (181)
T ss_dssp SEECCS-SSCHHHHHHHHHCCCCEEE
T ss_pred eEEECc-ccChHHHHHHhccCceEEE
Confidence 688833 1125788888999998875
No 11
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=25.38 E-value=73 Score=18.55 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHhhcCCceEEEeeCCC
Q 035256 5 IHEIKDFLLTARRKDARSVKIKRSRD 30 (69)
Q Consensus 5 i~diK~FL~~arrkdAk~v~IKk~k~ 30 (69)
...+.+||..|...+.+.|.|--++.
T Consensus 18 ~~~l~~fl~~a~~~g~~~v~IIHGkG 43 (83)
T 2zqe_A 18 LLEVDQALEEARALGLSTLRLLHGKG 43 (83)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 35688999999999999999977654
No 12
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*
Probab=25.26 E-value=79 Score=20.18 Aligned_cols=58 Identities=12% Similarity=0.275 Sum_probs=40.2
Q ss_pred HHHHHHHhhcCCceE------------EEeeCC------CeeeEEEeecCcEEEEEecChHHHHHhh-hcCCCCCcee
Q 035256 9 KDFLLTARRKDARSV------------KIKRSR------DVVKFKVRCSKYLYTLCVFDSEKADKLK-QSLPPGLSVQ 67 (69)
Q Consensus 9 K~FL~~arrkdAk~v------------~IKk~k------~~tKFKvRcsryLYTLvv~d~~KAeKl~-qSLPp~l~v~ 67 (69)
.++...|.+.+++.. .+-|+. ..-.|..|+-+-|..+.- +++-++.|. -+||||..+.
T Consensus 39 ~~I~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhv~gKkSreqFE~RtHKRlIdI~~-~~~~v~~l~~~~lp~GV~ve 115 (121)
T 3u5c_U 39 SNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYIDLEA-PVQIVKRITQITIEPGVDVE 115 (121)
T ss_dssp HHHHHHHHHTCCCEEEEEEEEEEEEEEEEESSSSSCSSCCEEEEEEEEEEEEEEECC-CHHHHHHHHHSSCCTTCEEE
T ss_pred HHHHHHHHHhCCeeecCcCCCCcceEEEEEcCCCCCCCcchhheEEEEEEEEEEecC-CHHHHHHHHcCcCCCCCEEE
Confidence 455667778777622 233321 235899999999988874 677777765 6899998874
No 13
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.04 E-value=72 Score=19.25 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=24.1
Q ss_pred eeEEEeecCcEEEEEecChHHHHHhhhc
Q 035256 32 VKFKVRCSKYLYTLCVFDSEKADKLKQS 59 (69)
Q Consensus 32 tKFKvRcsryLYTLvv~d~~KAeKl~qS 59 (69)
--|++..+.-.|.|...+.+-+++....
T Consensus 73 ~~Fki~~~~~~y~f~A~s~e~~~~Wl~a 100 (112)
T 2coc_A 73 HVWKLQWAKQSWYLSASSAELQQQWLET 100 (112)
T ss_dssp EEEEEEETTEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEecCCeEEEEEcCCHHHHHHHHHH
Confidence 4799888899999999999999887554
No 14
>1z5s_D RAN-binding protein 2; ligase, SUMO, UBC9, nuclear pore complex; 3.01A {Homo sapiens}
Probab=25.03 E-value=28 Score=21.76 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEEecChHHHHHhhhcCCCCC
Q 035256 42 LYTLCVFDSEKADKLKQSLPPGL 64 (69)
Q Consensus 42 LYTLvv~d~~KAeKl~qSLPp~l 64 (69)
+|....+..++|.-++--|||++
T Consensus 7 VyE~kpT~EQka~A~kL~LPptF 29 (83)
T 1z5s_D 7 VYELTPTAEQKALATKLKLPPTF 29 (83)
T ss_dssp EEECCCCHHHHHHHHHTTCCSSS
T ss_pred EEecCCCHHHHHHHHhcCCCcce
Confidence 68888888889888888899986
No 15
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=22.71 E-value=81 Score=19.85 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=20.7
Q ss_pred EEEEecChHHHHHhhhcCCCCCcee
Q 035256 43 YTLCVFDSEKADKLKQSLPPGLSVQ 67 (69)
Q Consensus 43 YTLvv~d~~KAeKl~qSLPp~l~v~ 67 (69)
-|+++.|-+-|..+..+++++..+.
T Consensus 144 ~~~vv~~l~~A~~~~~~~~~~~~~V 168 (213)
T 1gxl_A 144 NSVVVETLDDAIRMKKKYRLNTRIA 168 (213)
T ss_dssp SEEEESSHHHHHHHHHHTCSSCEEE
T ss_pred CEEEECCHHHHHHHHHhcCCCceEE
Confidence 4889999999999998888876543
No 16
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=22.48 E-value=60 Score=20.74 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=20.5
Q ss_pred EEEecChHHHHHhhhcCCCCCcee
Q 035256 44 TLCVFDSEKADKLKQSLPPGLSVQ 67 (69)
Q Consensus 44 TLvv~d~~KAeKl~qSLPp~l~v~ 67 (69)
|++++|-+-|.++..++++++.+.
T Consensus 119 tlVv~dl~~A~~~~~~~~~~~r~V 142 (166)
T 3l51_B 119 TLVANNLDQATRVAYQRDRRWRVV 142 (166)
T ss_dssp CEEESSHHHHHHHHBCSSCBCCEE
T ss_pred EEEECCHHHHHHHHHhhCCCcEEE
Confidence 999999999999988887776653
No 17
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=25.78 E-value=21 Score=23.53 Aligned_cols=35 Identities=34% Similarity=0.263 Sum_probs=27.0
Q ss_pred HhhcCCc-eEEEeeCCCeeeEEEeecCcEEEEEecC
Q 035256 15 ARRKDAR-SVKIKRSRDVVKFKVRCSKYLYTLCVFD 49 (69)
Q Consensus 15 arrkdAk-~v~IKk~k~~tKFKvRcsryLYTLvv~d 49 (69)
|.-++|= +++|++-...+|+||+...=.++..|.|
T Consensus 15 AKyrGAFCEAkIk~V~r~vKcKV~~k~~~~~~~v~d 50 (118)
T 2lcd_A 15 AKYRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQD 50 (118)
Confidence 3344444 6889998889999999888788888876
Done!