Query 035256
Match_columns 69
No_of_seqs 101 out of 172
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 17:12:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035256.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035256hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga2 d.58.44.1 (A:135-181,A 56.9 1.5 0.00011 25.1 0.6 16 52-67 83-98 (104)
2 d1wh9a_ d.52.3.1 (A:) Ribosoma 56.4 9.1 0.00066 22.2 4.3 35 6-40 10-45 (92)
3 d1yq2a2 b.1.4.1 (A:220-312) be 43.3 4.2 0.00031 22.2 1.1 11 39-49 70-80 (93)
4 d2qalj1 d.58.15.1 (J:5-102) Ri 28.7 8.8 0.00064 22.0 0.9 59 9-67 19-95 (98)
5 d1bhga1 b.1.4.1 (A:226-328) be 27.2 11 0.0008 20.5 1.1 10 39-48 72-81 (103)
6 d1jz8a1 b.1.4.1 (A:220-333) be 25.5 12 0.0009 20.3 1.1 9 40-48 87-95 (114)
7 d1gxja_ d.215.1.1 (A:) Smc hin 24.3 8.1 0.00059 23.2 0.1 23 36-58 39-61 (161)
8 d2vzsa1 b.1.4.1 (A:226-335) Ex 24.3 13 0.00097 20.5 1.1 10 39-48 83-92 (110)
9 d2je8a1 b.1.4.1 (A:220-330) Be 22.6 15 0.0011 20.1 1.1 10 39-48 85-94 (111)
10 d2coca1 b.55.1.1 (A:8-106) FYV 21.9 48 0.0035 16.6 3.1 30 31-60 65-94 (99)
11 d2f06a1 d.58.18.11 (A:71-141) 21.0 26 0.0019 18.6 1.9 17 42-58 40-56 (71)
12 d1nyna_ d.235.1.1 (A:) Hypothe 20.9 78 0.0057 18.6 4.4 28 31-58 4-31 (111)
13 d1wpxb1 b.17.1.1 (B:501-719) C 20.8 11 0.00079 23.9 0.2 12 40-51 86-97 (219)
14 d1lcya1 b.36.1.4 (A:226-325) M 20.5 50 0.0037 17.5 3.2 33 4-36 62-94 (100)
No 1
>d1iwga2 d.58.44.1 (A:135-181,A:274-330) Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia coli [TaxId: 562]}
Probab=56.88 E-value=1.5 Score=25.08 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=12.6
Q ss_pred HHHHhhhcCCCCCcee
Q 035256 52 KADKLKQSLPPGLSVQ 67 (69)
Q Consensus 52 KAeKl~qSLPp~l~v~ 67 (69)
+.+.++++||+|+++.
T Consensus 83 ~l~el~~~lP~Gv~~~ 98 (104)
T d1iwga2 83 ELAKMEPFFPSGLKIV 98 (104)
T ss_dssp HTTTTGGGCCTTEEEE
T ss_pred HHHHHHhcCCCCeEEE
Confidence 4456889999999875
No 2
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=56.35 E-value=9.1 Score=22.19 Aligned_cols=35 Identities=11% Similarity=0.269 Sum_probs=26.0
Q ss_pred hhHHHHHHHHh-hcCCceEEEeeCCCeeeEEEeecC
Q 035256 6 HEIKDFLLTAR-RKDARSVKIKRSRDVVKFKVRCSK 40 (69)
Q Consensus 6 ~diK~FL~~ar-rkdAk~v~IKk~k~~tKFKvRcsr 40 (69)
.+|++||..-- +.+...|.|.++.+.++.-+.|+|
T Consensus 10 a~Ire~l~k~l~~Agis~ieI~Rt~~~i~I~I~tar 45 (92)
T d1wh9a_ 10 AELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATR 45 (92)
T ss_dssp HHHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESC
T ss_pred HHHHHHHHHHHHhCCcceEEEEECCCeEEEEEEeCC
Confidence 36889997643 335557999999998888777765
No 3
>d1yq2a2 b.1.4.1 (A:220-312) beta-Galactosidase, domains 2 and 4 {Arthrobacter sp. c2-2 [TaxId: 192168]}
Probab=43.25 E-value=4.2 Score=22.22 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=8.7
Q ss_pred cCcEEEEEecC
Q 035256 39 SKYLYTLCVFD 49 (69)
Q Consensus 39 sryLYTLvv~d 49 (69)
+-|||||.+.-
T Consensus 70 ~P~LY~l~v~l 80 (93)
T d1yq2a2 70 VPRLYEASVSS 80 (93)
T ss_dssp SBCCEEEEEEC
T ss_pred CCeEEEEEEEE
Confidence 45999999864
No 4
>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia coli [TaxId: 562]}
Probab=28.72 E-value=8.8 Score=22.01 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=39.5
Q ss_pred HHHHHHHhhcCCce------------EEEeeCC-----CeeeEEEeecCcEEEEEecChHHHHHhhh-cCCCCCcee
Q 035256 9 KDFLLTARRKDARS------------VKIKRSR-----DVVKFKVRCSKYLYTLCVFDSEKADKLKQ-SLPPGLSVQ 67 (69)
Q Consensus 9 K~FL~~arrkdAk~------------v~IKk~k-----~~tKFKvRcsryLYTLvv~d~~KAeKl~q-SLPp~l~v~ 67 (69)
+++...|++.+++- +.+-++. ..-.|..|.-+=|--+.-.|.+-++.|.+ .||+|..+.
T Consensus 19 ~~i~~~a~~~g~~v~GPiplPtk~~~~tvlrSPh~~kksreqfE~r~hkRli~i~~~~~~~~~~l~~~~lp~GV~i~ 95 (98)
T d2qalj1 19 AEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQ 95 (98)
T ss_dssp HHHHHHHTTSSCCCCBCCCCCCEEEEEEECCSSSSCTTCCEEEEEEEEEECBCBSSCCHHHHHHTTTSCCCSSCCCC
T ss_pred HHHHHHHHHcCCeEECCCCCCcEEEEEEEEecCCCCCchhhheeeeeeEEEEEEECCCHHHHHHHhcCCCCCCcEEE
Confidence 45566777776642 2233322 13569999988777775557777888877 899998763
No 5
>d1bhga1 b.1.4.1 (A:226-328) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.16 E-value=11 Score=20.54 Aligned_cols=10 Identities=50% Similarity=0.763 Sum_probs=7.7
Q ss_pred cCcEEEEEec
Q 035256 39 SKYLYTLCVF 48 (69)
Q Consensus 39 sryLYTLvv~ 48 (69)
.-|||+|.+.
T Consensus 72 ~P~LY~l~v~ 81 (103)
T d1bhga1 72 PAYLYSLEVQ 81 (103)
T ss_dssp CSCCEEEEEE
T ss_pred CCeEEEEEEE
Confidence 3789999874
No 6
>d1jz8a1 b.1.4.1 (A:220-333) beta-Galactosidase, domains 2 and 4 {Escherichia coli [TaxId: 562]}
Probab=25.46 E-value=12 Score=20.29 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=7.3
Q ss_pred CcEEEEEec
Q 035256 40 KYLYTLCVF 48 (69)
Q Consensus 40 ryLYTLvv~ 48 (69)
-|||+|.+.
T Consensus 87 P~LY~l~v~ 95 (114)
T d1jz8a1 87 PNLYRAVVE 95 (114)
T ss_dssp BCCEEEEEE
T ss_pred CeEEEEEEE
Confidence 589999875
No 7
>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]}
Probab=24.34 E-value=8.1 Score=23.15 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=18.7
Q ss_pred EeecCcEEEEEecChHHHHHhhh
Q 035256 36 VRCSKYLYTLCVFDSEKADKLKQ 58 (69)
Q Consensus 36 vRcsryLYTLvv~d~~KAeKl~q 58 (69)
.=++.+|++++|.|.+-|.++.+
T Consensus 39 ~aLG~~l~~vVV~~~~~A~~~i~ 61 (161)
T d1gxja_ 39 VLLGGTAQNIVVRNVDTAKAIVE 61 (161)
T ss_dssp HHHGGGGGCEEESSHHHHHHHHH
T ss_pred HHhhhhhceEEECCHHHHHHHHH
Confidence 34678899999999998888764
No 8
>d2vzsa1 b.1.4.1 (A:226-335) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=24.26 E-value=13 Score=20.54 Aligned_cols=10 Identities=20% Similarity=0.192 Sum_probs=8.1
Q ss_pred cCcEEEEEec
Q 035256 39 SKYLYTLCVF 48 (69)
Q Consensus 39 sryLYTLvv~ 48 (69)
+-|||++++.
T Consensus 83 ~P~LY~~~v~ 92 (110)
T d2vzsa1 83 GQHRYDLDLT 92 (110)
T ss_dssp CCCCEEEEEE
T ss_pred CccEEEEEEE
Confidence 5799999873
No 9
>d2je8a1 b.1.4.1 (A:220-330) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=22.60 E-value=15 Score=20.07 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=7.5
Q ss_pred cCcEEEEEec
Q 035256 39 SKYLYTLCVF 48 (69)
Q Consensus 39 sryLYTLvv~ 48 (69)
.-||||+.+.
T Consensus 85 ~P~LY~~~v~ 94 (111)
T d2je8a1 85 TPTLYDFSAQ 94 (111)
T ss_dssp CBCCEEEEEE
T ss_pred CCceEEEEEE
Confidence 5699998763
No 10
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.92 E-value=48 Score=16.60 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=24.7
Q ss_pred eeeEEEeecCcEEEEEecChHHHHHhhhcC
Q 035256 31 VVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60 (69)
Q Consensus 31 ~tKFKvRcsryLYTLvv~d~~KAeKl~qSL 60 (69)
.--|++-+..--|.|.-++++-++...+.|
T Consensus 65 ~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aL 94 (99)
T d2coca1 65 GHVWKLQWAKQSWYLSASSAELQQQWLETL 94 (99)
T ss_dssp SEEEEEEETTEEEEEEESSHHHHHHHHHHH
T ss_pred ceEEEEEcCCcEEEEECCCHHHHHHHHHHH
Confidence 346999999999999999999888876654
No 11
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=20.99 E-value=26 Score=18.55 Aligned_cols=17 Identities=6% Similarity=-0.042 Sum_probs=13.4
Q ss_pred EEEEEecChHHHHHhhh
Q 035256 42 LYTLCVFDSEKADKLKQ 58 (69)
Q Consensus 42 LYTLvv~d~~KAeKl~q 58 (69)
+--|.|+|+++|.++.+
T Consensus 40 ~~vl~vdd~~~a~~~L~ 56 (71)
T d2f06a1 40 NVVIRPSNMDKCIEVLK 56 (71)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHH
Confidence 45678899999998654
No 12
>d1nyna_ d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.94 E-value=78 Score=18.62 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=23.5
Q ss_pred eeeEEEeecCcEEEEEecChHHHHHhhh
Q 035256 31 VVKFKVRCSKYLYTLCVFDSEKADKLKQ 58 (69)
Q Consensus 31 ~tKFKvRcsryLYTLvv~d~~KAeKl~q 58 (69)
.+|+.-..+++=|-..|.|++.+++++.
T Consensus 4 ~~k~~Ykg~~~d~~V~v~dp~~v~~wr~ 31 (111)
T d1nyna_ 4 VTKYFYKGENTDLIVFAASEELVDEYLK 31 (111)
T ss_dssp CEEEEEECSSSEEEEEESCHHHHHHHHH
T ss_pred eEEEEEcCCCceEEEEeCCHHHHHHHHc
Confidence 4677778888878888899999999986
No 13
>d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.85 E-value=11 Score=23.89 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=9.9
Q ss_pred CcEEEEEecChH
Q 035256 40 KYLYTLCVFDSE 51 (69)
Q Consensus 40 ryLYTLvv~d~~ 51 (69)
--+|||++.|++
T Consensus 86 ~~~ytlvm~DPD 97 (219)
T d1wpxb1 86 DDLFTLVMTDPD 97 (219)
T ss_dssp SCCEEEEEEESS
T ss_pred CCeEEEEEECCC
Confidence 358999999975
No 14
>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.53 E-value=50 Score=17.51 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=20.7
Q ss_pred hhhhHHHHHHHHhhcCCceEEEeeCCCeeeEEE
Q 035256 4 QIHEIKDFLLTARRKDARSVKIKRSRDVVKFKV 36 (69)
Q Consensus 4 ei~diK~FL~~arrkdAk~v~IKk~k~~tKFKv 36 (69)
+|.+..||....+-.+.-.+.|.++....-+.|
T Consensus 62 ~V~s~~dl~~~l~~g~~v~l~v~R~g~~~~~~v 94 (100)
T d1lcya1 62 MVQNAEDVYEAVRTQSQLAVQIRRGRETLTLYV 94 (100)
T ss_dssp ECCSHHHHHHHHTTCSSEEEEEEETTEEEEEEE
T ss_pred EcCCHHHHHHHhcCCCEEEEEEEECCEEEEEEE
Confidence 466777887777544444677777765544444
Done!