Query 035259
Match_columns 69
No_of_seqs 91 out of 115
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 17:14:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kv5_A FST, putative uncharact 29.8 24 0.00083 18.9 1.4 10 5-14 10-19 (33)
2 3arc_L Photosystem II reaction 17.4 1.2E+02 0.0043 16.5 2.7 17 48-64 15-31 (37)
3 3lti_A DNA-directed RNA polyme 13.8 84 0.0029 23.2 1.8 9 17-25 4-12 (296)
4 1cse_I Eglin C; complex(serine 12.2 47 0.0016 19.2 0.0 8 33-40 2-9 (70)
5 1v54_D Cytochrome C oxidase su 11.6 94 0.0032 20.9 1.4 19 2-20 76-94 (147)
6 1xd7_A YWNA; structural genomi 11.4 1.4E+02 0.0049 18.3 2.1 18 36-53 2-19 (145)
7 1e6y_B Methyl-coenzyme M reduc 11.0 42 0.0014 26.5 -0.6 29 21-50 108-139 (433)
8 1hbn_B Methyl-coenzyme M reduc 10.2 47 0.0016 26.4 -0.6 29 21-50 111-142 (442)
9 4eai_A 5'-AMP-activated protei 9.5 94 0.0032 19.7 0.7 41 22-62 63-104 (106)
10 2y69_D Cytochrome C oxidase su 9.1 1.3E+02 0.0045 20.7 1.4 18 2-19 98-115 (169)
No 1
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=29.84 E-value=24 Score=18.88 Aligned_cols=10 Identities=30% Similarity=0.673 Sum_probs=8.4
Q ss_pred hHHHHHHHHH
Q 035259 5 GPVVIAVVLF 14 (69)
Q Consensus 5 gPV~i~vvLF 14 (69)
||+++|++|=
T Consensus 10 aPivVGvvl~ 19 (33)
T 2kv5_A 10 APIFVGLVLE 19 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7999999874
No 2
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=17.44 E-value=1.2e+02 Score=16.45 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 035259 48 TIIFFGLVTIFLIAIGV 64 (69)
Q Consensus 48 a~ifF~l~~if~~ai~v 64 (69)
|-+|.+++.||.+|+-.
T Consensus 15 TSLy~GLLlifvlavlF 31 (37)
T 3arc_L 15 TSLYLGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 44788888888887643
No 3
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=13.85 E-value=84 Score=23.24 Aligned_cols=9 Identities=44% Similarity=1.065 Sum_probs=7.3
Q ss_pred hccceeEee
Q 035259 17 LSPGLLFQL 25 (69)
Q Consensus 17 LsPGLLfQ~ 25 (69)
+|||.-|+-
T Consensus 4 ~SPGv~f~~ 12 (296)
T 3lti_A 4 MSPGVFFDS 12 (296)
T ss_dssp CCCEEEEEE
T ss_pred CCCEEEEec
Confidence 699999973
No 4
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=12.17 E-value=47 Score=19.23 Aligned_cols=8 Identities=50% Similarity=0.688 Sum_probs=1.4
Q ss_pred Eeecccch
Q 035259 33 EFGNMHTS 40 (69)
Q Consensus 33 eFgn~~Ts 40 (69)
|||+.|||
T Consensus 2 ~~~~~k~s 9 (70)
T 1cse_I 2 EFGSELKS 9 (70)
T ss_dssp ------CB
T ss_pred CcCCCCCc
Confidence 78888876
No 5
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=11.59 E-value=94 Score=20.89 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=12.9
Q ss_pred CCchHHHHHHHHHHHhccc
Q 035259 2 ADWGPVVIAVVLFVLLSPG 20 (69)
Q Consensus 2 ~DWgPV~i~vvLFvlLsPG 20 (69)
.+|.+|+-++.+|+-+|=+
T Consensus 76 gewK~v~g~v~~~i~~s~~ 94 (147)
T 1v54_D 76 NEWKTVVGAAMFFIGFTAL 94 (147)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 4688887777777665533
No 6
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=11.39 E-value=1.4e+02 Score=18.28 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=11.6
Q ss_pred cccchHHHHHHHHHHHHH
Q 035259 36 NMHTSGLSILVHTIIFFG 53 (69)
Q Consensus 36 n~~Tsg~si~vHa~ifF~ 53 (69)
.|+|+....-+|+++|.+
T Consensus 2 ~M~s~~~~yAl~~L~~La 19 (145)
T 1xd7_A 2 SLINSRLAVAIHILSLIS 19 (145)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 467778888899988865
No 7
>1e6y_B Methyl-coenzyme M reductase I beta subunit; biological methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP: a.89.1.1 d.58.31.2
Probab=10.99 E-value=42 Score=26.55 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=23.6
Q ss_pred eeEeecCCCce---eEeecccchHHHHHHHHHH
Q 035259 21 LLFQLPGRNRV---VEFGNMHTSGLSILVHTII 50 (69)
Q Consensus 21 LLfQ~PG~~r~---veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+ |. -||..--|+.++-++|++|
T Consensus 108 llvqvPs~-R~~~aa~y~~~~~~~a~A~~~aIi 139 (433)
T 1e6y_B 108 LLIQSPKS-RIIAGADFMSATTVGAAAVTQTIM 139 (433)
T ss_dssp EEEECCHH-HHHTSSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HhhhhhhhhHHHHHHHHHHHHHHH
Confidence 78899944 54 6888888899999999986
No 8
>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} SCOP: a.89.1.1 d.58.31.2 PDB: 1hbm_B* 1hbo_B* 1hbu_B* 1mro_B* 3m1v_B* 3m2r_B* 3m2u_B* 3m2v_B* 3m30_B* 3m32_B* 3pot_B* 1e6v_B*
Probab=10.23 E-value=47 Score=26.37 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=23.6
Q ss_pred eeEeecCCCce---eEeecccchHHHHHHHHHH
Q 035259 21 LLFQLPGRNRV---VEFGNMHTSGLSILVHTII 50 (69)
Q Consensus 21 LLfQ~PG~~r~---veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+ |. -||.---|+.++-++|++|
T Consensus 111 llvqvPs~-R~~~aa~y~~~~~~~a~A~~~aii 142 (442)
T 1hbn_B 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (442)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HhhhhcchhHHHHHHHHHHHHHHH
Confidence 78899954 54 6788888899999999987
No 9
>4eai_A 5'-AMP-activated protein kinase catalytic subunit linker, 5'-AMP-activated protein...; AMPK, transferase; HET: AMP; 2.29A {Rattus norvegicus} PDB: 4eaj_A* 4eak_A* 4eal_A*
Probab=9.48 E-value=94 Score=19.67 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=29.0
Q ss_pred eEeecCCCceeEeecccchHH-HHHHHHHHHHHHHHHHHHHH
Q 035259 22 LFQLPGRNRVVEFGNMHTSGL-SILVHTIIFFGLVTIFLIAI 62 (69)
Q Consensus 22 LfQ~PG~~r~veFgn~~Tsg~-si~vHa~ifF~l~~if~~ai 62 (69)
|||++-++--+||-++..+.. +--=|+.+||=+++-++..+
T Consensus 63 LYkv~~~~YLLDfq~i~g~~~~~~~~~~~~F~d~ca~li~~l 104 (106)
T 4eai_A 63 LYQVDSRTYLLDFRSIDDGGGGGGGSHTIEFFEMCANLIKIL 104 (106)
T ss_dssp EEECSSSCEEEEEEECCSSCCCSSSCHHHHHHHHHHHHHHHC
T ss_pred EEEecCCcEEEEEEeccCCCCCCCCcCcEeHHHHHHHHHHHH
Confidence 788987777899988887310 01136899999988877653
No 10
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.07 E-value=1.3e+02 Score=20.69 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=12.5
Q ss_pred CCchHHHHHHHHHHHhcc
Q 035259 2 ADWGPVVIAVVLFVLLSP 19 (69)
Q Consensus 2 ~DWgPV~i~vvLFvlLsP 19 (69)
.+|.+|+-++.+|+-+|=
T Consensus 98 gEWK~V~ggv~~~i~~s~ 115 (169)
T 2y69_D 98 NEWKTVVGAAMFFIGFTA 115 (169)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 468888777777766553
Done!