Query 035259
Match_columns 69
No_of_seqs 91 out of 115
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 17:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035259.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035259hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 31.0 22 0.0016 18.2 2.7 18 47-64 14-31 (37)
2 d1hbnb2 d.58.31.2 (B:2-188) Be 23.7 7 0.00051 26.2 -0.3 29 21-50 111-142 (187)
3 d1uf3a_ d.159.1.6 (A:) Hypothe 18.3 23 0.0017 19.9 1.3 15 22-38 214-228 (228)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 14.9 64 0.0047 15.5 2.4 15 48-62 7-21 (30)
5 d1jb0m_ f.23.19.1 (M:) Subunit 12.9 22 0.0016 17.5 0.2 12 11-22 10-21 (31)
6 d1tmka_ c.37.1.1 (A:) Thymidyl 11.4 83 0.006 18.8 2.7 23 27-49 1-23 (214)
7 d1x4ka2 g.39.1.3 (A:8-34) Four 10.0 58 0.0042 15.5 1.2 10 25-35 9-18 (27)
8 d1e6yb2 d.58.31.2 (B:2002-2185 9.0 20 0.0014 23.8 -1.1 29 21-50 108-139 (184)
9 d1kr7a_ a.1.1.4 (A:) Nerve tis 8.8 45 0.0033 18.4 0.6 15 1-17 1-15 (110)
10 d1e6vb2 d.58.31.2 (B:7-189) Be 8.7 28 0.0021 23.0 -0.4 30 21-50 107-138 (183)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=31.03 E-value=22 Score=18.18 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 035259 47 HTIIFFGLVTIFLIAIGV 64 (69)
Q Consensus 47 Ha~ifF~l~~if~~ai~v 64 (69)
+|-+|.+++.||.+++-.
T Consensus 14 rtsLy~GlLlifvl~vLF 31 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 456888888888887644
No 2
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.70 E-value=7 Score=26.25 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=24.1
Q ss_pred eeEeecCCCc---eeEeecccchHHHHHHHHHH
Q 035259 21 LLFQLPGRNR---VVEFGNMHTSGLSILVHTII 50 (69)
Q Consensus 21 LLfQ~PG~~r---~veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+ | --||..--|+..+-++||+|
T Consensus 111 llvqvPs~-Ri~~aa~Y~v~~t~~~~A~~~aIi 142 (187)
T d1hbnb2 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (187)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HHhhhhhhhHHHHHHHHHHHHHHH
Confidence 78999954 5 56888888999999999987
No 3
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=18.29 E-value=23 Score=19.88 Aligned_cols=15 Identities=40% Similarity=0.707 Sum_probs=10.4
Q ss_pred eEeecCCCceeEeeccc
Q 035259 22 LFQLPGRNRVVEFGNMH 38 (69)
Q Consensus 22 LfQ~PG~~r~veFgn~~ 38 (69)
+.++.+++ +||||.+
T Consensus 214 ~i~~~~~~--ie~~~~~ 228 (228)
T d1uf3a_ 214 LLDLRARK--LETGNVR 228 (228)
T ss_dssp EEETTTTE--EEEEECC
T ss_pred EEEccCCE--EEEEeeC
Confidence 55666654 9999864
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.94 E-value=64 Score=15.53 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 035259 48 TIIFFGLVTIFLIAI 62 (69)
Q Consensus 48 a~ifF~l~~if~~ai 62 (69)
.+||-+++.+|..|+
T Consensus 7 v~ifac~i~lfffai 21 (30)
T d2axtt1 7 VFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777777765
No 5
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=12.86 E-value=22 Score=17.55 Aligned_cols=12 Identities=42% Similarity=0.703 Sum_probs=8.2
Q ss_pred HHHHHHhcccee
Q 035259 11 VVLFVLLSPGLL 22 (69)
Q Consensus 11 vvLFvlLsPGLL 22 (69)
++|-+.|.||.|
T Consensus 10 valvial~pg~l 21 (31)
T d1jb0m_ 10 VALVIALLPAVL 21 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677888865
No 6
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.44 E-value=83 Score=18.76 Aligned_cols=23 Identities=13% Similarity=0.419 Sum_probs=18.4
Q ss_pred CCCceeEeecccchHHHHHHHHH
Q 035259 27 GRNRVVEFGNMHTSGLSILVHTI 49 (69)
Q Consensus 27 G~~r~veFgn~~Tsg~si~vHa~ 49 (69)
||++.+-|-+..-||+|-.++.+
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L 23 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNIL 23 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEECCCCCcHHHHHHHH
Confidence 78888888888888888877754
No 7
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.04 E-value=58 Score=15.48 Aligned_cols=10 Identities=40% Similarity=0.966 Sum_probs=6.8
Q ss_pred ecCCCceeEee
Q 035259 25 LPGRNRVVEFG 35 (69)
Q Consensus 25 ~PG~~r~veFg 35 (69)
+||. |..||-
T Consensus 9 MPGs-rKme~k 18 (27)
T d1x4ka2 9 MPGT-RKMEYK 18 (27)
T ss_dssp CSSS-CEEEET
T ss_pred cCCc-eeeccc
Confidence 6887 467773
No 8
>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=8.98 E-value=20 Score=23.85 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=23.3
Q ss_pred eeEeecCCCce---eEeecccchHHHHHHHHHH
Q 035259 21 LLFQLPGRNRV---VEFGNMHTSGLSILVHTII 50 (69)
Q Consensus 21 LLfQ~PG~~r~---veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+ |. -||..--|+..+-++||+|
T Consensus 108 llvqvPs~-Ri~~aa~Y~~~~t~~~~A~~~aIi 139 (184)
T d1e6yb2 108 LLIQSPKS-RIIAGADFMSATTVGAAAVTQTIM 139 (184)
T ss_dssp EEEECCHH-HHHTSSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HHhhhcchhHHHHHHHHHHHHHHH
Confidence 78899954 42 5788888999999999987
No 9
>d1kr7a_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon-worm (Cerebratulus lacteus) [TaxId: 6221]}
Probab=8.78 E-value=45 Score=18.41 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=10.1
Q ss_pred CCCchHHHHHHHHHHHh
Q 035259 1 MADWGPVVIAVVLFVLL 17 (69)
Q Consensus 1 m~DWgPV~i~vvLFvlL 17 (69)
|.+|++|.-- +|.-|
T Consensus 1 ~~swa~v~~~--ff~~L 15 (110)
T d1kr7a_ 1 MVNWAAVVDD--FYQEL 15 (110)
T ss_dssp CCCHHHHHHH--HHHHH
T ss_pred CCCHHHHHHH--HHHHH
Confidence 7889988653 55544
No 10
>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=8.74 E-value=28 Score=23.04 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=23.6
Q ss_pred eeEeecCCCc--eeEeecccchHHHHHHHHHH
Q 035259 21 LLFQLPGRNR--VVEFGNMHTSGLSILVHTII 50 (69)
Q Consensus 21 LLfQ~PG~~r--~veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+.- --||.---|+..+-++||+|
T Consensus 107 llvqvPs~Ri~~aa~y~v~~~~~~~A~~~aIi 138 (183)
T d1e6vb2 107 LLVQLPSERVKVMADPYSGTLQAGMAVVHAII 138 (183)
T ss_dssp EEEECCHHHHTTCSSSSTHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 7889995421 35788888999999999986
Done!