BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035266
         (69 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XMQ|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides
          Insight Into Its Role As A Tumor Suppressor
 pdb|2XMQ|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides
          Insight Into Its Role As A Tumor Suppressor
 pdb|2XMQ|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides
          Insight Into Its Role As A Tumor Suppressor
          Length = 281

 Score = 28.5 bits (62), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 24 VKTSRGSVSVFVCG--DQEKPALITYPDVALN 53
          V+T  GSV+  V G    ++PA++TY DV LN
Sbjct: 6  VETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 37


>pdb|2QMQ|A Chain A, Crystal Structure Of A N-Myc Downstream Regulated 2
          Protein (Ndrg2, Syld, Ndr2, Ai182517, Au040374) From
          Mus Musculus At 1.70 A Resolution
          Length = 286

 Score = 27.7 bits (60), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 24 VKTSRGSVSVFVCG--DQEKPALITYPDVALN 53
          V+T  GSV+  V G    ++PA+ TY DV LN
Sbjct: 16 VETPYGSVTFTVYGTPKPKRPAIFTYHDVGLN 47


>pdb|2XMR|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides
          Insight Into Its Role As A Tumor Suppressor
 pdb|2XMR|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides
          Insight Into Its Role As A Tumor Suppressor
 pdb|2XMR|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides
          Insight Into Its Role As A Tumor Suppressor
          Length = 281

 Score = 27.7 bits (60), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 24 VKTSRGSVSVFVCGDQE--KPALITYPDVALN 53
          V+T  GSV+  V G     +PA++TY DV LN
Sbjct: 6  VETPYGSVTFTVYGTPAPARPAILTYHDVGLN 37


>pdb|2XMS|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides
          Insight Into Its Role As A Tumor Suppressor
          Length = 281

 Score = 26.9 bits (58), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 24 VKTSRGSVSVFVCGDQE--KPALITYPDVALN 53
          V+T  GSV+  V G     +PA++TY DV LN
Sbjct: 6  VETPYGSVTFTVYGTPYPYRPAILTYHDVGLN 37


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,355,137
Number of Sequences: 62578
Number of extensions: 32104
Number of successful extensions: 59
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 4
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)