BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035266
         (69 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O23969|SF21_HELAN Pollen-specific protein SF21 OS=Helianthus annuus GN=SF21 PE=2
          SV=1
          Length = 352

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 40/58 (68%)

Query: 1  MGESSDSVSIDIDMVPFGGKECVVKTSRGSVSVFVCGDQEKPALITYPDVALNCIVFF 58
          M +S  S+S+       GGKE +++T  GSVSV VCGDQEKP LITYPD+ALN +  F
Sbjct: 1  MADSGHSISVTFPSFHSGGKEHIIRTGCGSVSVTVCGDQEKPPLITYPDLALNHMSCF 58


>sp|Q6GQL1|NDRG3_XENLA Protein NDRG3 OS=Xenopus laevis GN=ndrg3 PE=2 SV=1
          Length = 375

 Score = 31.6 bits (70), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 17 FGGKECVVKTSRGSVSVFVCGDQE--KPALITYPDVALNCIVFF--FFHF 62
          F G+E  ++T+ G V V + G+    +P L+TY D+ LN    F  FF+F
Sbjct: 28 FDGQEHDIETALGVVHVTMSGNTRGNRPVLLTYHDIGLNHKSCFNSFFNF 77


>sp|A5A6K6|NDRG2_PANTR Protein NDRG2 OS=Pan troglodytes GN=NDRG2 PE=2 SV=1
          Length = 357

 Score = 30.0 bits (66), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 16 PFGGKECVVKTSRGSVSVFVCG--DQEKPALITYPDVALN 53
          P   K   V+T  GSV+  V G    ++PA++TY DV LN
Sbjct: 21 PEAAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 60


>sp|Q4R4Q3|NDRG1_MACFA Protein NDRG1 OS=Macaca fascicularis GN=Ndrg1 PE=2 SV=1
          Length = 394

 Score = 29.6 bits (65), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 17 FGGKECVVKTSRGSVSVFVCGDQE--KPALITYPDVALN 53
          F  +E  ++T  GSV V +CG  +  +P ++TY D+ +N
Sbjct: 30 FDVQEQDIETLHGSVHVTLCGTPKGNRPVILTYHDIGMN 68


>sp|Q92597|NDRG1_HUMAN Protein NDRG1 OS=Homo sapiens GN=NDRG1 PE=1 SV=1
          Length = 394

 Score = 29.6 bits (65), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 17 FGGKECVVKTSRGSVSVFVCGDQE--KPALITYPDVALN 53
          F  +E  ++T  GSV V +CG  +  +P ++TY D+ +N
Sbjct: 30 FDVQEQDIETLHGSVHVTLCGTPKGNRPVILTYHDIGMN 68


>sp|P20333|TNR1B_HUMAN Tumor necrosis factor receptor superfamily member 1B OS=Homo
           sapiens GN=TNFRSF1B PE=1 SV=3
          Length = 461

 Score = 29.6 bits (65), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 3   ESSDSVSIDIDMVPFGGKECVVKTSRGSVSVFVCGDQEKPALITYPDVAL 52
           +SS S S   + VPF  +EC  ++   +    +   +EKP  +  PD  +
Sbjct: 409 DSSPSESPKDEQVPFSKEECAFRSQLETPETLLGSTEEKPLPLGVPDAGM 458


>sp|Q3SYX0|NDRG1_BOVIN Protein NDRG1 OS=Bos taurus GN=NDRG1 PE=2 SV=1
          Length = 384

 Score = 29.3 bits (64), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 17 FGGKECVVKTSRGSVSVFVCGDQE--KPALITYPDVALN 53
          F  +E  ++T  GS+ V +CG  +  +P ++TY D+ +N
Sbjct: 30 FDVQEQDIETLHGSIHVTLCGTPKGNRPVILTYHDIGMN 68


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.334    0.149    0.472 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,975,673
Number of Sequences: 539616
Number of extensions: 780638
Number of successful extensions: 2979
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2968
Number of HSP's gapped (non-prelim): 11
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.8 bits)