Query 035266
Match_columns 69
No_of_seqs 106 out of 124
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 10:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2931 Differentiation-relate 99.9 3E-26 6.6E-31 175.0 4.6 64 1-64 1-69 (326)
2 PF03096 Ndr: Ndr family; Int 99.9 1.8E-23 3.9E-28 156.2 3.2 44 21-64 1-46 (283)
3 PF04083 Abhydro_lipase: Parti 77.1 8.3 0.00018 23.0 4.5 40 16-55 9-57 (63)
4 PRK00870 haloalkane dehalogena 72.3 11 0.00023 26.3 4.7 54 7-61 9-65 (302)
5 PRK05855 short chain dehydroge 68.7 11 0.00024 28.1 4.4 41 20-61 4-44 (582)
6 TIGR02427 protocat_pcaD 3-oxoa 68.4 6.8 0.00015 24.5 2.8 30 31-61 2-32 (251)
7 PLN02872 triacylglycerol lipas 64.1 16 0.00035 28.2 4.6 40 16-55 41-88 (395)
8 PLN02679 hydrolase, alpha/beta 60.7 13 0.00029 27.2 3.5 52 8-62 52-108 (360)
9 PRK03204 haloalkane dehalogena 59.5 20 0.00043 25.1 4.1 50 8-60 1-52 (286)
10 TIGR02240 PHA_depoly_arom poly 56.3 23 0.00049 24.2 3.9 39 23-62 6-45 (276)
11 COG3167 PilO Tfp pilus assembl 56.2 9.4 0.0002 28.6 2.1 27 30-56 138-175 (211)
12 PRK10162 acetyl esterase; Prov 55.5 27 0.00059 25.4 4.4 34 19-52 57-92 (318)
13 PF01834 XRCC1_N: XRCC1 N term 46.1 3.7 7.9E-05 29.2 -1.3 27 30-59 42-68 (153)
14 TIGR03056 bchO_mg_che_rel puta 46.0 41 0.00089 22.1 3.7 39 22-61 9-47 (278)
15 PF01678 DAP_epimerase: Diamin 45.5 50 0.0011 20.7 4.0 24 18-41 87-110 (121)
16 PRK13969 proline racemase; Pro 45.1 34 0.00073 26.4 3.6 28 10-37 103-132 (334)
17 TIGR02331 rib_alpha Rib/alpha/ 43.2 22 0.00049 22.6 2.1 37 13-51 20-56 (80)
18 PF10531 SLBB: SLBB domain; I 42.3 35 0.00077 19.2 2.7 21 32-53 1-21 (59)
19 KOG2994 Uracil DNA glycosylase 42.0 24 0.00052 27.7 2.4 27 26-59 125-152 (297)
20 PLN02634 probable pectinestera 41.5 42 0.00091 26.5 3.7 28 27-54 102-129 (359)
21 PF00925 GTP_cyclohydro2: GTP 41.4 51 0.0011 22.5 3.8 28 21-48 6-49 (169)
22 PRK09279 pyruvate phosphate di 41.1 5.5 0.00012 34.5 -1.2 29 30-58 826-856 (879)
23 TIGR01250 pro_imino_pep_2 prol 40.6 48 0.001 21.3 3.3 29 23-51 6-35 (288)
24 TIGR00530 AGP_acyltrn 1-acyl-s 38.9 43 0.00092 20.1 2.8 29 31-64 2-34 (130)
25 PLN02176 putative pectinestera 38.4 43 0.00093 26.1 3.3 31 21-51 79-109 (340)
26 TIGR02162 torC trimethylamine- 37.5 56 0.0012 25.9 3.9 42 13-55 228-272 (386)
27 PF02575 YbaB_DNA_bd: YbaB/Ebf 37.3 46 0.00099 20.1 2.8 21 20-40 21-41 (93)
28 cd06551 LPLAT Lysophospholipid 36.9 43 0.00094 21.4 2.7 32 29-65 10-45 (187)
29 KOG2624 Triglyceride lipase-ch 35.6 58 0.0013 25.9 3.7 33 17-50 46-82 (403)
30 KOG3149 Transcription initiati 35.1 45 0.00097 24.8 2.9 31 25-55 82-116 (249)
31 PRK00153 hypothetical protein; 34.2 50 0.0011 21.0 2.7 22 19-40 28-49 (104)
32 TIGR01694 MTAP 5'-deoxy-5'-met 33.8 58 0.0013 23.1 3.2 36 17-52 17-55 (241)
33 PRK05077 frsA fermentation/res 33.6 1.1E+02 0.0023 23.5 4.8 38 15-52 164-205 (414)
34 PF13351 DUF4099: Protein of u 33.5 70 0.0015 19.9 3.2 30 14-43 50-79 (85)
35 COG0412 Dienelactone hydrolase 33.5 86 0.0019 22.3 4.0 33 19-51 2-37 (236)
36 PF15023 DUF4523: Protein of u 32.1 32 0.0007 25.0 1.7 31 27-59 113-146 (166)
37 TIGR00103 DNA_YbaB_EbfC DNA-bi 31.9 55 0.0012 21.0 2.6 21 20-40 31-51 (102)
38 PF04096 Nucleoporin2: Nucleop 31.6 53 0.0012 22.3 2.6 12 39-50 79-90 (141)
39 cd06463 p23_like Proteins cont 31.1 97 0.0021 17.0 5.5 44 3-46 3-46 (84)
40 KOG4178 Soluble epoxide hydrol 30.9 71 0.0015 25.0 3.5 34 17-50 19-53 (322)
41 COG3411 Ferredoxin [Energy pro 30.3 59 0.0013 20.2 2.4 21 29-49 1-25 (64)
42 COG4279 Uncharacterized conser 30.1 1E+02 0.0022 23.9 4.2 36 17-55 38-73 (266)
43 PRK14626 hypothetical protein; 29.9 65 0.0014 21.2 2.7 22 19-40 30-51 (110)
44 PRK14875 acetoin dehydrogenase 29.4 73 0.0016 22.4 3.1 38 23-61 113-150 (371)
45 PF01556 CTDII: DnaJ C termina 28.5 1.3E+02 0.0029 17.7 4.0 34 19-52 16-50 (81)
46 PF08909 DUF1854: Domain of un 28.4 52 0.0011 22.7 2.1 18 21-38 75-92 (133)
47 cd02783 MopB_CT_2 The MopB_CT_ 28.2 1.8E+02 0.0039 19.3 4.7 36 17-52 47-84 (156)
48 PRK14627 hypothetical protein; 27.5 78 0.0017 20.4 2.7 21 20-40 27-47 (100)
49 TIGR00628 ung uracil-DNA glyco 27.3 53 0.0012 24.0 2.1 27 26-59 48-75 (212)
50 KOG0322 G-protein beta subunit 26.8 87 0.0019 24.9 3.3 46 14-60 249-303 (323)
51 PLN02497 probable pectinestera 26.7 80 0.0017 24.6 3.1 22 30-51 81-102 (331)
52 PLN02432 putative pectinestera 26.7 93 0.002 23.7 3.4 25 27-51 57-81 (293)
53 PRK00407 hypothetical protein; 26.6 72 0.0016 21.4 2.6 28 27-54 90-126 (139)
54 PRK15304 putative fimbrial out 26.4 1.5E+02 0.0032 25.1 4.8 43 7-49 679-726 (801)
55 COG0718 Uncharacterized protei 26.3 96 0.0021 20.7 3.1 21 20-40 31-51 (105)
56 PLN02665 pectinesterase family 26.1 97 0.0021 24.4 3.5 22 30-51 117-138 (366)
57 PRK14623 hypothetical protein; 26.0 83 0.0018 20.8 2.7 21 20-40 27-47 (106)
58 cd03450 NodN NodN (nodulation 25.7 81 0.0017 21.1 2.7 15 31-46 127-141 (149)
59 PF14740 DUF4471: Domain of un 25.5 21 0.00045 27.3 -0.3 14 54-67 215-228 (289)
60 COG0253 DapF Diaminopimelate e 25.1 1.5E+02 0.0032 22.5 4.2 26 20-46 234-259 (272)
61 PF12528 DUF3728: Prepilin pep 25.0 1.7E+02 0.0037 18.3 3.9 38 9-46 36-77 (84)
62 PLN02304 probable pectinestera 25.0 93 0.002 24.8 3.2 30 22-51 116-145 (379)
63 PF04773 FecR: FecR protein; 24.7 1.5E+02 0.0033 17.1 3.8 10 22-31 61-70 (98)
64 PLN02488 probable pectinestera 24.3 1E+02 0.0023 25.6 3.5 33 21-53 237-269 (509)
65 PLN02682 pectinesterase family 24.2 93 0.002 24.6 3.1 30 22-51 111-140 (369)
66 PRK14629 hypothetical protein; 24.1 99 0.0021 20.2 2.8 21 20-40 29-49 (99)
67 PF01568 Molydop_binding: Moly 23.9 1.1E+02 0.0024 18.2 2.8 36 17-52 45-82 (110)
68 PF05448 AXE1: Acetyl xylan es 23.4 47 0.001 24.9 1.3 21 38-58 80-100 (320)
69 PF13345 DUF4098: Domain of un 23.0 1.4E+02 0.0031 16.2 3.0 15 20-34 43-57 (76)
70 PHA03200 uracil DNA glycosylas 22.6 69 0.0015 24.4 2.0 27 25-59 79-106 (255)
71 TIGR00505 ribA GTP cyclohydrol 22.5 1.5E+02 0.0033 20.7 3.6 22 28-49 25-49 (191)
72 PRK05254 uracil-DNA glycosylas 22.1 71 0.0015 23.5 2.0 27 26-59 54-81 (224)
73 PRK15213 fimbrial outer membra 21.9 1.7E+02 0.0036 24.8 4.3 43 7-49 685-732 (797)
74 PHA03347 uracil DNA glycosylas 21.9 66 0.0014 24.4 1.8 26 26-59 74-100 (252)
75 PRK14625 hypothetical protein; 21.8 1.1E+02 0.0024 20.3 2.7 21 20-40 28-48 (109)
76 PLN02385 hydrolase; alpha/beta 21.8 2.2E+02 0.0048 20.5 4.4 41 20-60 62-106 (349)
77 PRK03762 hypothetical protein; 21.6 1.1E+02 0.0024 20.0 2.6 21 20-40 31-51 (103)
78 PRK14622 hypothetical protein; 21.5 1.2E+02 0.0025 19.7 2.7 21 20-40 27-47 (103)
79 cd06395 PB1_Map2k5 PB1 domain 21.5 38 0.00082 22.5 0.4 24 23-50 4-28 (91)
80 cd00298 ACD_sHsps_p23-like Thi 21.4 1.4E+02 0.0031 15.6 2.8 36 3-38 3-38 (80)
81 PF04879 Molybdop_Fe4S4: Molyb 21.4 76 0.0016 17.4 1.6 20 23-43 18-37 (55)
82 PF09922 DUF2154: Cell wall-ac 20.9 1.8E+02 0.0038 18.4 3.4 30 6-35 25-56 (115)
83 PF10033 ATG13: Autophagy-rela 20.6 68 0.0015 23.0 1.6 14 23-36 213-226 (233)
84 PF12119 DUF3581: Protein of u 20.6 1.5E+02 0.0033 22.4 3.4 29 6-34 154-189 (218)
85 PRK13970 hydroxyproline-2-epim 20.5 1.5E+02 0.0032 23.0 3.5 27 9-37 100-126 (311)
86 PF13734 Inhibitor_I69: Spi pr 20.5 96 0.0021 20.1 2.1 23 27-51 50-72 (96)
87 PRK14621 hypothetical protein; 20.3 1.1E+02 0.0024 20.2 2.5 21 20-40 30-50 (111)
88 TIGR00673 cynS cyanate hydrata 20.1 1.1E+02 0.0023 21.6 2.5 25 14-38 118-143 (150)
89 PF07880 T4_gp9_10: Bacterioph 20.1 1.3E+02 0.0028 23.3 3.1 26 18-43 74-102 (278)
90 PRK03592 haloalkane dehalogena 20.1 2.6E+02 0.0057 19.1 4.3 40 20-62 8-47 (295)
No 1
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.92 E-value=3e-26 Score=174.99 Aligned_cols=64 Identities=45% Similarity=0.566 Sum_probs=61.7
Q ss_pred CCCCCCceEEeecCCCCCC---eeEEEeCCCceEEEEEecCCC--CCeEEEcccccccceecchhhhhh
Q 035266 1 MGESSDSVSIDIDMVPFGG---KECVVKTSRGSVSVFVCGDQE--KPALITYPDVALNCIVFFFFHFFI 64 (69)
Q Consensus 1 m~~s~~svsid~~~~~~~~---~Eh~V~T~~G~v~V~v~Gd~~--kPailTYHDlGLNh~ScF~~fF~~ 64 (69)
|+++.+.++.|++.+..++ |||+|+|++|.|||+||||++ ||||||||||||||+||||+||+|
T Consensus 1 M~~~~~~~~~d~~pl~~~~~~~~e~~V~T~~G~v~V~V~Gd~~~~kpaiiTyhDlglN~~scFq~ff~~ 69 (326)
T KOG2931|consen 1 MAELQDVVSTDIKPLLEGGATCQEHDVETAHGVVHVTVYGDPKGNKPAIITYHDLGLNHKSCFQGFFNF 69 (326)
T ss_pred CCcccccccccchhhhcCCCcceeeeeccccccEEEEEecCCCCCCceEEEecccccchHhHhHHhhcC
Confidence 8899999999999999999 999999999999999999877 999999999999999999999997
No 2
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.88 E-value=1.8e-23 Score=156.24 Aligned_cols=44 Identities=48% Similarity=0.567 Sum_probs=35.4
Q ss_pred eEEEeCCCceEEEEEecCCC--CCeEEEcccccccceecchhhhhh
Q 035266 21 ECVVKTSRGSVSVFVCGDQE--KPALITYPDVALNCIVFFFFHFFI 64 (69)
Q Consensus 21 Eh~V~T~~G~v~V~v~Gd~~--kPailTYHDlGLNh~ScF~~fF~~ 64 (69)
||+|+|++|+|+|+|||+++ |||||||||+||||+|||++||+|
T Consensus 1 eh~v~t~~G~v~V~v~G~~~~~kp~ilT~HDvGlNh~scF~~ff~~ 46 (283)
T PF03096_consen 1 EHDVETPYGSVHVTVQGDPKGNKPAILTYHDVGLNHKSCFQGFFNF 46 (283)
T ss_dssp -EEEEETTEEEEEEEESS--TTS-EEEEE--TT--HHHHCHHHHCS
T ss_pred CceeccCceEEEEEEEecCCCCCceEEEeccccccchHHHHHHhcc
Confidence 89999999999999999877 999999999999999999999997
No 3
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=77.10 E-value=8.3 Score=23.01 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=20.1
Q ss_pred CCCCeeEEEeCCCceE-EEE-EecC-------CCCCeEEEcccccccce
Q 035266 16 PFGGKECVVKTSRGSV-SVF-VCGD-------QEKPALITYPDVALNCI 55 (69)
Q Consensus 16 ~~~~~Eh~V~T~~G~v-~V~-v~Gd-------~~kPailTYHDlGLNh~ 55 (69)
-...+||.|.|..|=+ .+. |.+. ..||+++-.|=|..+..
T Consensus 9 GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~ 57 (63)
T PF04083_consen 9 GYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSD 57 (63)
T ss_dssp T---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GG
T ss_pred CCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChH
Confidence 3466899999999955 332 3333 36999999997765543
No 4
>PRK00870 haloalkane dehalogenase; Provisional
Probab=72.30 E-value=11 Score=26.26 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=38.6
Q ss_pred ceEEeecCCCCCCeeEEEeCC-Cc--eEEEEEecCCCCCeEEEcccccccceecchhh
Q 035266 7 SVSIDIDMVPFGGKECVVKTS-RG--SVSVFVCGDQEKPALITYPDVALNCIVFFFFH 61 (69)
Q Consensus 7 svsid~~~~~~~~~Eh~V~T~-~G--~v~V~v~Gd~~kPailTYHDlGLNh~ScF~~f 61 (69)
+.--.....|+.++..++... .| .+++...|+.++|+||-.|-.|-+.. +|+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~G~~~~~~lvliHG~~~~~~-~w~~~ 65 (302)
T PRK00870 9 SRFENLPDYPFAPHYVDVDDGDGGPLRMHYVDEGPADGPPVLLLHGEPSWSY-LYRKM 65 (302)
T ss_pred ccccCCcCCCCCceeEeecCCCCceEEEEEEecCCCCCCEEEEECCCCCchh-hHHHH
Confidence 344455677888888777752 33 36677788878899999999987653 57654
No 5
>PRK05855 short chain dehydrogenase; Validated
Probab=68.69 E-value=11 Score=28.05 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=31.9
Q ss_pred eeEEEeCCCceEEEEEecCCCCCeEEEcccccccceecchhh
Q 035266 20 KECVVKTSRGSVSVFVCGDQEKPALITYPDVALNCIVFFFFH 61 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~v~Gd~~kPailTYHDlGLNh~ScF~~f 61 (69)
+++.+....+.+++.+.|+.++|+||-.|-++-+.. +|..+
T Consensus 4 ~~~~~~~~g~~l~~~~~g~~~~~~ivllHG~~~~~~-~w~~~ 44 (582)
T PRK05855 4 RRTVVSSDGVRLAVYEWGDPDRPTVVLVHGYPDNHE-VWDGV 44 (582)
T ss_pred eEEEEeeCCEEEEEEEcCCCCCCeEEEEcCCCchHH-HHHHH
Confidence 355556666689999999888999999999998874 46554
No 6
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=68.43 E-value=6.8 Score=24.51 Aligned_cols=30 Identities=10% Similarity=0.074 Sum_probs=23.1
Q ss_pred EEEEEecCC-CCCeEEEcccccccceecchhh
Q 035266 31 VSVFVCGDQ-EKPALITYPDVALNCIVFFFFH 61 (69)
Q Consensus 31 v~V~v~Gd~-~kPailTYHDlGLNh~ScF~~f 61 (69)
+++...|+. ++|+||-.|..|.++. +|..+
T Consensus 2 ~~~~~~g~~~~~~~li~~hg~~~~~~-~~~~~ 32 (251)
T TIGR02427 2 LHYRLDGAADGAPVLVFINSLGTDLR-MWDPV 32 (251)
T ss_pred ceEEeecCCCCCCeEEEEcCcccchh-hHHHH
Confidence 456677865 8999999999998875 46544
No 7
>PLN02872 triacylglycerol lipase
Probab=64.13 E-value=16 Score=28.18 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=28.3
Q ss_pred CCCCeeEEEeCCCceE-EEEEe-------cCCCCCeEEEcccccccce
Q 035266 16 PFGGKECVVKTSRGSV-SVFVC-------GDQEKPALITYPDVALNCI 55 (69)
Q Consensus 16 ~~~~~Eh~V~T~~G~v-~V~v~-------Gd~~kPailTYHDlGLNh~ 55 (69)
-...+||.|.|+.|-+ .+.-. |..+||+++-.|-++-+..
T Consensus 41 gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~ 88 (395)
T PLN02872 41 GYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGD 88 (395)
T ss_pred CCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCccccccc
Confidence 3566899999999954 44331 2245899999998876553
No 8
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=60.68 E-value=13 Score=27.18 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=33.9
Q ss_pred eEEeecCCCCCCeeEEEeCCCc-eEEEEEecCC----CCCeEEEcccccccceecchhhh
Q 035266 8 VSIDIDMVPFGGKECVVKTSRG-SVSVFVCGDQ----EKPALITYPDVALNCIVFFFFHF 62 (69)
Q Consensus 8 vsid~~~~~~~~~Eh~V~T~~G-~v~V~v~Gd~----~kPailTYHDlGLNh~ScF~~fF 62 (69)
|....|.+...+ +.++=..+ .+++...|+. +.|+||-.|-+|.++. .|..++
T Consensus 52 ~~~~~~~~~~~~--~~~~~~g~~~i~Y~~~G~g~~~~~gp~lvllHG~~~~~~-~w~~~~ 108 (360)
T PLN02679 52 VEAELEEIYERC--KKWKWKGEYSINYLVKGSPEVTSSGPPVLLVHGFGASIP-HWRRNI 108 (360)
T ss_pred ccccHHHhhccC--ceEEECCceeEEEEEecCcccCCCCCeEEEECCCCCCHH-HHHHHH
Confidence 444444444443 44443333 8888888976 6799999999998875 365544
No 9
>PRK03204 haloalkane dehalogenase; Provisional
Probab=59.52 E-value=20 Score=25.14 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=34.0
Q ss_pred eEEeecCCC--CCCeeEEEeCCCceEEEEEecCCCCCeEEEcccccccceecchh
Q 035266 8 VSIDIDMVP--FGGKECVVKTSRGSVSVFVCGDQEKPALITYPDVALNCIVFFFF 60 (69)
Q Consensus 8 vsid~~~~~--~~~~Eh~V~T~~G~v~V~v~Gd~~kPailTYHDlGLNh~ScF~~ 60 (69)
+|||.+.-+ .+-++..+++..+.+++...|+ +|+||=.|=.+.+. .+|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~G~--~~~iv~lHG~~~~~-~~~~~ 52 (286)
T PRK03204 1 MSIDFTPDPQLYPFESRWFDSSRGRIHYIDEGT--GPPILLCHGNPTWS-FLYRD 52 (286)
T ss_pred CCccccCCCccccccceEEEcCCcEEEEEECCC--CCEEEEECCCCccH-HHHHH
Confidence 356665433 3345678888888898888884 58899899887544 34553
No 10
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=56.26 E-value=23 Score=24.21 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=27.7
Q ss_pred EEeCCCceEEEEEe-cCCCCCeEEEcccccccceecchhhh
Q 035266 23 VVKTSRGSVSVFVC-GDQEKPALITYPDVALNCIVFFFFHF 62 (69)
Q Consensus 23 ~V~T~~G~v~V~v~-Gd~~kPailTYHDlGLNh~ScF~~fF 62 (69)
.+++....++.... |+.++|+||-.|.+|.+.. .|.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~plvllHG~~~~~~-~w~~~~ 45 (276)
T TIGR02240 6 TIDLDGQSIRTAVRPGKEGLTPLLIFNGIGANLE-LVFPFI 45 (276)
T ss_pred EeccCCcEEEEEEecCCCCCCcEEEEeCCCcchH-HHHHHH
Confidence 34555567777664 4667789999999999886 476543
No 11
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.24 E-value=9.4 Score=28.61 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=19.8
Q ss_pred eEEEEEecC-----------CCCCeEEEccccccccee
Q 035266 30 SVSVFVCGD-----------QEKPALITYPDVALNCIV 56 (69)
Q Consensus 30 ~v~V~v~Gd-----------~~kPailTYHDlGLNh~S 56 (69)
++++.|.|. ..-|-|||+||+.+--++
T Consensus 138 Pisi~v~G~YHdia~F~~~VasLpRIiTl~d~~i~~~~ 175 (211)
T COG3167 138 PISISVTGSYHDIAQFVSDVASLPRIITLHDLKIKPVP 175 (211)
T ss_pred ceEEEEcccHHHHHHHHHHHhhcceeeeeecceeccCC
Confidence 456666662 578999999999875443
No 12
>PRK10162 acetyl esterase; Provisional
Probab=55.46 E-value=27 Score=25.36 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=27.0
Q ss_pred CeeEEEeCCCceEEEEEec--CCCCCeEEEcccccc
Q 035266 19 GKECVVKTSRGSVSVFVCG--DQEKPALITYPDVAL 52 (69)
Q Consensus 19 ~~Eh~V~T~~G~v~V~v~G--d~~kPailTYHDlGL 52 (69)
.++..|+++.|.|.+.++- ...+|+||-+|-=|.
T Consensus 57 ~~~~~i~~~~g~i~~~~y~P~~~~~p~vv~~HGGg~ 92 (318)
T PRK10162 57 TRAYMVPTPYGQVETRLYYPQPDSQATLFYLHGGGF 92 (318)
T ss_pred EEEEEEecCCCceEEEEECCCCCCCCEEEEEeCCcc
Confidence 4677888999988888874 345799999999664
No 13
>PF01834 XRCC1_N: XRCC1 N terminal domain; InterPro: IPR002706 DNA-repair protein Xrcc1 functions in the repair of single-strand DNA breaks in mammalian cells and forms a repair complex with beta-Pol, ligase III and PARP []. The NMR solution structure of the Xrcc1 N-terminal domain (Xrcc1 NTD) shows that the structural core is a beta-sandwich with beta-strands connected by loops, three helices and two short two-stranded beta-sheets at each connection side. The Xrcc1 NTD specifically binds single-strand break DNA (gapped and nicked) and a gapped DNA-beta-Pol complex [].; GO: 0003684 damaged DNA binding, 0000012 single strand break repair, 0005634 nucleus; PDB: 3K77_E 3K75_C 3LQC_A 1XNA_A 1XNT_A.
Probab=46.10 E-value=3.7 Score=29.16 Aligned_cols=27 Identities=33% Similarity=0.186 Sum_probs=18.1
Q ss_pred eEEEEEecCCCCCeEEEcccccccceecch
Q 035266 30 SVSVFVCGDQEKPALITYPDVALNCIVFFF 59 (69)
Q Consensus 30 ~v~V~v~Gd~~kPailTYHDlGLNh~ScF~ 59 (69)
.++|.+|= +||..|++=|+| |+-|||=
T Consensus 42 ~~~V~lQl--~~~~~I~~IDIG-N~gSAfi 68 (153)
T PF01834_consen 42 QASVELQL--EKASQITSIDIG-NEGSAFI 68 (153)
T ss_dssp EEEEEEEE--EEEE--SEEEEE-EEB-SEE
T ss_pred eEEEEEEe--cCceEEEEEecc-CCCeEEE
Confidence 45566653 569999999999 8888873
No 14
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=46.02 E-value=41 Score=22.05 Aligned_cols=39 Identities=13% Similarity=-0.066 Sum_probs=28.6
Q ss_pred EEEeCCCceEEEEEecCCCCCeEEEcccccccceecchhh
Q 035266 22 CVVKTSRGSVSVFVCGDQEKPALITYPDVALNCIVFFFFH 61 (69)
Q Consensus 22 h~V~T~~G~v~V~v~Gd~~kPailTYHDlGLNh~ScF~~f 61 (69)
..+++.-..+++...|..++|+||-.|-+|-+.. +|..+
T Consensus 9 ~~~~~~~~~~~~~~~g~~~~~~vv~~hG~~~~~~-~~~~~ 47 (278)
T TIGR03056 9 RRVTVGPFHWHVQDMGPTAGPLLLLLHGTGASTH-SWRDL 47 (278)
T ss_pred ceeeECCEEEEEEecCCCCCCeEEEEcCCCCCHH-HHHHH
Confidence 3455555577777788878899999999998765 46543
No 15
>PF01678 DAP_epimerase: Diaminopimelate epimerase; InterPro: IPR001653 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Two lysine biosynthesis pathways evolved separately in organisms, the diaminopimelic acid (DAP) and aminoadipic acid (AAA) pathways. The DAP pathway synthesizes L-lysine from aspartate and pyruvate, and diaminopimelic acid is an intermediate. This pathway is utilised by most bacteria, some archaea, some fungi, some algae, and plants. The AAA pathway synthesizes L-lysine from alpha-ketoglutarate and acetyl coenzyme A (acetyl-CoA), and alpha-aminoadipic acid is an intermediate. This pathway is utilised by most fungi, some algae, the bacterium Thermus thermophilus, and probably some archaea, such as Sulfolobus, Thermoproteus, and Pyrococcus. No organism is known to possess both pathways []. There four known variations of the DAP pathway in bacteria: the succinylase, acetylase, aminotransferase, and dehydrogenase pathways. These pathways share the steps converting L-aspartate to L-2,3,4,5- tetrahydrodipicolinate (THDPA), but the subsequent steps leading to the production of meso-diaminopimelate, the immediate precursor of L-lysine, are different []. The succinylase pathway acylates THDPA with succinyl-CoA to generate N-succinyl-LL-2-amino-6-ketopimelate and forms meso-DAP by subsequent transamination, desuccinylation, and epimerization. This pathway is utilised by proteobacteria and many firmicutes and actinobacteria. The acetylase pathway is analogous to the succinylase pathway but uses N-acetyl intermediates. This pathway is limited to certain Bacillus species, in which the corresponding genes have not been identified. The aminotransferase pathway converts THDPA directly to LL-DAP by diaminopimelate aminotransferase (DapL) without acylation. This pathway is shared by cyanobacteria, Chlamydia, the archaeon Methanothermobacter thermautotrophicus, and the plant Arabidopsis thaliana. The dehydrogenase pathway forms meso-DAP directly from THDPA, NADPH, and NH4 _ by using diaminopimelate dehydrogenase (Ddh). This pathway is utilised by some Bacillus and Brevibacterium species and Corynebacterium glutamicum. Most bacteria use only one of the four variants, although certain bacteria, such as C. glutamicum and Bacillus macerans, possess both the succinylase and dehydrogenase pathways. This entry represents diaminopimelate epimerase (5.1.1.7 from EC), which catalyses the isomerisation of L,L-dimaminopimelate to meso-DAP in the biosynthetic pathway leading from aspartate to lysine. It is a member of the broader family of PLP-independent amino acid racemases. This enzyme is a monomeric protein of about 30 kDa consisting of two domains which are homologus in structure though they share little sequence similarity []. Each domain consists of mixed beta-sheets which fold into a barrel around the central helix. The active site cleft is formed from both domains and contains two conserved cysteines thought to function as the acid and base in the catalytic reaction []. Other PLP-independent racemases such as glutamate racemase have been shown to share a similar structure and mechanism of catalysis.; GO: 0008837 diaminopimelate epimerase activity, 0009089 lysine biosynthetic process via diaminopimelate; PDB: 2OTN_A 3FVE_A 2Q9J_A 2GKJ_A 1GQZ_A 2Q9H_A 1BWZ_A 2GKE_A 3EKM_C 3EJX_D ....
Probab=45.53 E-value=50 Score=20.67 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=20.8
Q ss_pred CCeeEEEeCCCceEEEEEecCCCC
Q 035266 18 GGKECVVKTSRGSVSVFVCGDQEK 41 (69)
Q Consensus 18 ~~~Eh~V~T~~G~v~V~v~Gd~~k 41 (69)
..++..|+|+-|.+.|.+..+.++
T Consensus 87 ~~~~v~v~t~gG~l~v~~~~~~~~ 110 (121)
T PF01678_consen 87 GKDEVTVETPGGILRVEVDEDGNN 110 (121)
T ss_dssp SSSEEEEEETTEEEEEEEETTSSS
T ss_pred cceEEEEEeCCcEEEEEEEcCCCE
Confidence 457899999999999999987765
No 16
>PRK13969 proline racemase; Provisional
Probab=45.07 E-value=34 Score=26.42 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=19.9
Q ss_pred EeecCCCCC--CeeEEEeCCCceEEEEEec
Q 035266 10 IDIDMVPFG--GKECVVKTSRGSVSVFVCG 37 (69)
Q Consensus 10 id~~~~~~~--~~Eh~V~T~~G~v~V~v~G 37 (69)
++.+.++.. +++..|+||-|.|+++++-
T Consensus 103 ~e~G~v~~~~~~~~v~ieTPaGlV~a~~~~ 132 (334)
T PRK13969 103 VETGIVKVEEPYTHIKLEAPAGMINARVKV 132 (334)
T ss_pred HHcCCcCCCCCceeEEEECCceEEEEEEEE
Confidence 344555543 3468999999999988863
No 17
>TIGR02331 rib_alpha Rib/alpha/Esp surface antigen repeat. Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.
Probab=43.23 E-value=22 Score=22.58 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=24.3
Q ss_pred cCCCCCCeeEEEeCCCceEEEEEecCCCCCeEEEccccc
Q 035266 13 DMVPFGGKECVVKTSRGSVSVFVCGDQEKPALITYPDVA 51 (69)
Q Consensus 13 ~~~~~~~~Eh~V~T~~G~v~V~v~Gd~~kPailTYHDlG 51 (69)
..||.+ ......++ |...+...|+..-.+++||+|=.
T Consensus 20 ~~lP~G-T~~tw~~~-~~pdt~~~G~~~~~V~VtyPDGS 56 (80)
T TIGR02331 20 VDLPDG-TTYVWKTV-NTPDTNTPGDKPAVVVVTYPDGT 56 (80)
T ss_pred ccCCCC-CEEecccC-CCCccccCCcccceEEEecCCCC
Confidence 345533 33444444 56677788888888999999843
No 18
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=42.27 E-value=35 Score=19.23 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=16.3
Q ss_pred EEEEecCCCCCeEEEccccccc
Q 035266 32 SVFVCGDQEKPALITYPDVALN 53 (69)
Q Consensus 32 ~V~v~Gd~~kPailTYHDlGLN 53 (69)
.|+|.|+-++|-.+.+.. |++
T Consensus 1 ~V~V~G~V~~PG~~~~~~-g~t 21 (59)
T PF10531_consen 1 TVTVSGEVNRPGTYELPP-GTT 21 (59)
T ss_dssp EEEEECSBSS-EEEEEET-T-B
T ss_pred CEEEEEEeCCCEEEEECC-CCc
Confidence 488999999999999887 553
No 19
>KOG2994 consensus Uracil DNA glycosylase [Replication, recombination and repair]
Probab=41.96 E-value=24 Score=27.67 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=24.0
Q ss_pred CCCceEEEEEec-CCCCCeEEEcccccccceecch
Q 035266 26 TSRGSVSVFVCG-DQEKPALITYPDVALNCIVFFF 59 (69)
Q Consensus 26 T~~G~v~V~v~G-d~~kPailTYHDlGLNh~ScF~ 59 (69)
||.-.+.|.|-| |+ ||+.|.-|--||+
T Consensus 125 ~P~~kvKVVIiGQDP-------YHn~nQAhGLsFS 152 (297)
T KOG2994|consen 125 TPFDKVKVVIIGQDP-------YHNPNQAHGLSFS 152 (297)
T ss_pred ccccceeEEEeccCC-------CCCCcccceeeee
Confidence 688889999999 66 9999999999996
No 20
>PLN02634 probable pectinesterase
Probab=41.50 E-value=42 Score=26.50 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=21.0
Q ss_pred CCceEEEEEecCCCCCeEEEcccccccc
Q 035266 27 SRGSVSVFVCGDQEKPALITYPDVALNC 54 (69)
Q Consensus 27 ~~G~v~V~v~Gd~~kPailTYHDlGLNh 54 (69)
+..+=.|+++|+...+.||||.|-+-+.
T Consensus 102 p~~k~~ItL~G~g~~~TiIt~~~~a~~~ 129 (359)
T PLN02634 102 PATKPYITFQGAGRDVTAIEWHDRASDR 129 (359)
T ss_pred cCCCCeEEEEecCCCceEEEeccccccc
Confidence 3333457899998899999999976543
No 21
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=41.37 E-value=51 Score=22.55 Aligned_cols=28 Identities=32% Similarity=0.596 Sum_probs=17.2
Q ss_pred eEEEeCCCceEEEE--------------Eec--CCCCCeEEEcc
Q 035266 21 ECVVKTSRGSVSVF--------------VCG--DQEKPALITYP 48 (69)
Q Consensus 21 Eh~V~T~~G~v~V~--------------v~G--d~~kPailTYH 48 (69)
|..++|++|...+. |.| +.+.|+++=.|
T Consensus 6 ~~~~~T~~G~f~~~~y~~~~~~~~H~ALv~G~~~~~~~~lVRvH 49 (169)
T PF00925_consen 6 ECPLPTRFGEFRLHAYRDTIDGQEHLALVKGDIDPDEPVLVRVH 49 (169)
T ss_dssp EEEEEETTEEEEEEEEEETTT--EEEEEEES---SSS-EEEEEE
T ss_pred EEEecCCCccEEEEEEEeCCCCeEEEEEEEecCCCCCCceEEec
Confidence 56677777765544 566 45788888765
No 22
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=41.13 E-value=5.5 Score=34.50 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=23.4
Q ss_pred eEEEEEecC--CCCCeEEEcccccccceecc
Q 035266 30 SVSVFVCGD--QEKPALITYPDVALNCIVFF 58 (69)
Q Consensus 30 ~v~V~v~Gd--~~kPailTYHDlGLNh~ScF 58 (69)
.+.|.|||. .+--+|--+|.+|++|.||=
T Consensus 826 ~~~vgICGE~ggdp~~i~~l~~lGld~vS~s 856 (879)
T PRK09279 826 DLKLGICGEHGGDPASIEFCHKVGLDYVSCS 856 (879)
T ss_pred CCEEEECCCCccCHHHHHHHHHCCCCEEEEC
Confidence 577999993 45556778899999999994
No 23
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=40.64 E-value=48 Score=21.29 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=21.1
Q ss_pred EEeCCCceEEEEEecC-CCCCeEEEccccc
Q 035266 23 VVKTSRGSVSVFVCGD-QEKPALITYPDVA 51 (69)
Q Consensus 23 ~V~T~~G~v~V~v~Gd-~~kPailTYHDlG 51 (69)
.|....|.+.+...|. ..+|+||-.|-.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~vl~~hG~~ 35 (288)
T TIGR01250 6 IITVDGGYHLFTKTGGEGEKIKLLLLHGGP 35 (288)
T ss_pred eecCCCCeEEEEeccCCCCCCeEEEEcCCC
Confidence 4556677788888774 4478899999864
No 24
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=38.90 E-value=43 Score=20.07 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=18.6
Q ss_pred EEEEEecCC----CCCeEEEcccccccceecchhhhhh
Q 035266 31 VSVFVCGDQ----EKPALITYPDVALNCIVFFFFHFFI 64 (69)
Q Consensus 31 v~V~v~Gd~----~kPailTYHDlGLNh~ScF~~fF~~ 64 (69)
+.|.+.|.. ++|+|+. -||.|+++.++.+
T Consensus 2 ~~~~v~g~~~lp~~~~~i~v-----~nH~s~~D~~~~~ 34 (130)
T TIGR00530 2 LKVEVVGPENLPAKSPVLVV-----ANHQSNLDPLTLS 34 (130)
T ss_pred cEEEEECcccCCCCCCEEEE-----ECCCchhHHHHHH
Confidence 356677733 4567764 4888888776644
No 25
>PLN02176 putative pectinesterase
Probab=38.39 E-value=43 Score=26.13 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=22.2
Q ss_pred eEEEeCCCceEEEEEecCCCCCeEEEccccc
Q 035266 21 ECVVKTSRGSVSVFVCGDQEKPALITYPDVA 51 (69)
Q Consensus 21 Eh~V~T~~G~v~V~v~Gd~~kPailTYHDlG 51 (69)
++.|.-+..+=.|+++|+....+||||.|-+
T Consensus 79 ~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~ 109 (340)
T PLN02176 79 REKVTIPKEKGYIYMQGKGIEKTIIAYGDHQ 109 (340)
T ss_pred EEEEEECCCCccEEEEEcCCCceEEEEeCCc
Confidence 3444444445558899988889999998754
No 26
>TIGR02162 torC trimethylamine-N-oxide reductase c-type cytochrome TorC. This family includes consists of TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes.
Probab=37.49 E-value=56 Score=25.92 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=31.9
Q ss_pred cCCCCCCeeEEEeCCCceEEEEEec--C-CCCCeEEEcccccccce
Q 035266 13 DMVPFGGKECVVKTSRGSVSVFVCG--D-QEKPALITYPDVALNCI 55 (69)
Q Consensus 13 ~~~~~~~~Eh~V~T~~G~v~V~v~G--d-~~kPailTYHDlGLNh~ 55 (69)
.+|.+..+-..+++.-+.+.|.|.| . ...+.+| |.+.|.|=.
T Consensus 228 G~L~pat~V~Vl~~~gd~~~V~i~Gwq~~~G~~~vi-Y~~~GkrI~ 272 (386)
T TIGR02162 228 GRLLPASPVKVVKVTGDWVQVEITGWRKSKGFGRVI-YEKFGKRIF 272 (386)
T ss_pred eEEccCceEEEEEecCCEEEEEEEEEEEcCCCceee-ecccCCchh
Confidence 4555555667777888899999999 4 5788888 888898753
No 27
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=37.32 E-value=46 Score=20.07 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=16.2
Q ss_pred eeEEEeCCCceEEEEEecCCC
Q 035266 20 KECVVKTSRGSVSVFVCGDQE 40 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~v~Gd~~ 40 (69)
.+...+.+.|.|+|+|-|++.
T Consensus 21 ~~~~~~s~~g~V~V~v~g~g~ 41 (93)
T PF02575_consen 21 IEVTGTSGDGLVTVTVNGNGE 41 (93)
T ss_dssp SEEEEEETCCTEEEEEETTS-
T ss_pred CEEEEEECCCEEEEEEecCce
Confidence 355677789999999999763
No 28
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=36.85 E-value=43 Score=21.43 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=22.9
Q ss_pred ceEEEEEecCCC----CCeEEEcccccccceecchhhhhhe
Q 035266 29 GSVSVFVCGDQE----KPALITYPDVALNCIVFFFFHFFIF 65 (69)
Q Consensus 29 G~v~V~v~Gd~~----kPailTYHDlGLNh~ScF~~fF~~~ 65 (69)
+.+.+.+.|..+ +|.|+. -||.|.++.++..+
T Consensus 10 ~~~~~~~~g~~~~p~~~~~i~v-----~nH~s~~D~~~~~~ 45 (187)
T cd06551 10 GFVRLEVKGPPPPPGGGPVLFV-----SNHSSWWDGLILFL 45 (187)
T ss_pred ceEEEEEeccccCCCCCCEEEE-----EcchhhHHHHHHHH
Confidence 567888999444 777764 48988888766544
No 29
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=35.63 E-value=58 Score=25.87 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=25.0
Q ss_pred CCCeeEEEeCCCceEEEEEec----CCCCCeEEEcccc
Q 035266 17 FGGKECVVKTSRGSVSVFVCG----DQEKPALITYPDV 50 (69)
Q Consensus 17 ~~~~Eh~V~T~~G~v~V~v~G----d~~kPailTYHDl 50 (69)
-..+||.|+|..|=+ +++++ +.+||+++--|=+
T Consensus 46 y~~E~h~V~T~DgYi-L~lhRIp~~~~~rp~Vll~HGL 82 (403)
T KOG2624|consen 46 YPVEEHEVTTEDGYI-LTLHRIPRGKKKRPVVLLQHGL 82 (403)
T ss_pred CceEEEEEEccCCeE-EEEeeecCCCCCCCcEEEeecc
Confidence 446899999999963 45444 5788999988855
No 30
>KOG3149 consensus Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=35.12 E-value=45 Score=24.82 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=23.9
Q ss_pred eCCCceEE----EEEecCCCCCeEEEcccccccce
Q 035266 25 KTSRGSVS----VFVCGDQEKPALITYPDVALNCI 55 (69)
Q Consensus 25 ~T~~G~v~----V~v~Gd~~kPailTYHDlGLNh~ 55 (69)
||.+|.-. |....+.+.+.|..||+|.|+..
T Consensus 82 EtGwgeF~i~i~i~f~d~~~~~~v~~~~~l~l~~~ 116 (249)
T KOG3149|consen 82 ETGWGEFEIQIEIFFTDDANEKKVTLYHDLKLHSY 116 (249)
T ss_pred eeccccceEEEEEEeccCCCCceeeeeeeEEeecc
Confidence 78898433 33345899999999999999865
No 31
>PRK00153 hypothetical protein; Validated
Probab=34.17 E-value=50 Score=20.96 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=16.7
Q ss_pred CeeEEEeCCCceEEEEEecCCC
Q 035266 19 GKECVVKTSRGSVSVFVCGDQE 40 (69)
Q Consensus 19 ~~Eh~V~T~~G~v~V~v~Gd~~ 40 (69)
..+...+.+.|.|+|++.|+.+
T Consensus 28 ~~~~~~~s~~G~V~V~v~G~~~ 49 (104)
T PRK00153 28 QMEVEGEAGGGLVKVTMTGKKE 49 (104)
T ss_pred ccEEEEEECCCeEEEEEecCce
Confidence 3455666788999999999764
No 32
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=33.77 E-value=58 Score=23.09 Aligned_cols=36 Identities=19% Similarity=0.055 Sum_probs=24.1
Q ss_pred CCCeeEEEeCCCceEE-EEEec-CCCCCeEE-Ecccccc
Q 035266 17 FGGKECVVKTSRGSVS-VFVCG-DQEKPALI-TYPDVAL 52 (69)
Q Consensus 17 ~~~~Eh~V~T~~G~v~-V~v~G-d~~kPail-TYHDlGL 52 (69)
.+..|..++||||.+. -...| -.+||+++ ..|=.|-
T Consensus 17 ~~~~~~~~~tp~g~~~~~~~~G~~~g~~vv~~~~~G~g~ 55 (241)
T TIGR01694 17 KDVEEVNVDTPYGNPSAPIVVGRVAGVDVAFLPRHGRGH 55 (241)
T ss_pred ccceEEEEECCCCCCCCCEEEEEECCEEEEEEeCCCCCC
Confidence 4567889999999764 23345 24567775 8777765
No 33
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=33.62 E-value=1.1e+02 Score=23.53 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=27.9
Q ss_pred CCCCCeeEEEeCCCc-eEEEEEe---cCCCCCeEEEcccccc
Q 035266 15 VPFGGKECVVKTSRG-SVSVFVC---GDQEKPALITYPDVAL 52 (69)
Q Consensus 15 ~~~~~~Eh~V~T~~G-~v~V~v~---Gd~~kPailTYHDlGL 52 (69)
.+...++..|++..| .+..++. ++.++|+||-.|-++-
T Consensus 164 ~~~~~e~v~i~~~~g~~l~g~l~~P~~~~~~P~Vli~gG~~~ 205 (414)
T PRK05077 164 LPGELKELEFPIPGGGPITGFLHLPKGDGPFPTVLVCGGLDS 205 (414)
T ss_pred cCCceEEEEEEcCCCcEEEEEEEECCCCCCccEEEEeCCccc
Confidence 344567888888888 7776665 4567899999887664
No 34
>PF13351 DUF4099: Protein of unknown function (DUF4099)
Probab=33.51 E-value=70 Score=19.86 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=22.5
Q ss_pred CCCCCCeeEEEeCCCceEEEEEecCCCCCe
Q 035266 14 MVPFGGKECVVKTSRGSVSVFVCGDQEKPA 43 (69)
Q Consensus 14 ~~~~~~~Eh~V~T~~G~v~V~v~Gd~~kPa 43 (69)
.+....+-.-++.+.|.+.|.++|-++.|.
T Consensus 50 ~~~~~arlsl~~~~dG~v~l~i~~ir~ep~ 79 (85)
T PF13351_consen 50 TIETDARLSLVRDEDGNVDLMIHPIRKEPE 79 (85)
T ss_pred EEecceEEEEEECCCCCEEEEEeeeecccc
Confidence 344556667778899999999999766664
No 35
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.48 E-value=86 Score=22.28 Aligned_cols=33 Identities=15% Similarity=0.472 Sum_probs=23.6
Q ss_pred CeeEEEeCCCceEEEEE---ecCCCCCeEEEccccc
Q 035266 19 GKECVVKTSRGSVSVFV---CGDQEKPALITYPDVA 51 (69)
Q Consensus 19 ~~Eh~V~T~~G~v~V~v---~Gd~~kPailTYHDlG 51 (69)
.++..+.++.+.+.-++ .|+...|++|-+||+.
T Consensus 2 ~~~v~~~~~~~~~~~~~a~P~~~~~~P~VIv~hei~ 37 (236)
T COG0412 2 GTDVTIPAPDGELPAYLARPAGAGGFPGVIVLHEIF 37 (236)
T ss_pred CcceEeeCCCceEeEEEecCCcCCCCCEEEEEeccc
Confidence 35677888777775443 3456669999999973
No 36
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=32.05 E-value=32 Score=24.99 Aligned_cols=31 Identities=29% Similarity=0.605 Sum_probs=22.2
Q ss_pred CCceE-EEEEecCCCCCeEEEccccc--ccceecch
Q 035266 27 SRGSV-SVFVCGDQEKPALITYPDVA--LNCIVFFF 59 (69)
Q Consensus 27 ~~G~v-~V~v~Gd~~kPailTYHDlG--LNh~ScF~ 59 (69)
.+|+| +||.+|.+ -||++|-|+- -|-++-|+
T Consensus 113 ~fGpI~SVT~cGrq--savVvF~d~~SAC~Av~Af~ 146 (166)
T PF15023_consen 113 VFGPIQSVTLCGRQ--SAVVVFKDITSACKAVSAFQ 146 (166)
T ss_pred hcCCcceeeecCCc--eEEEEehhhHHHHHHHHhhc
Confidence 57877 79999976 4999999973 33344444
No 37
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=31.91 E-value=55 Score=21.02 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=15.7
Q ss_pred eeEEEeCCCceEEEEEecCCC
Q 035266 20 KECVVKTSRGSVSVFVCGDQE 40 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~v~Gd~~ 40 (69)
.+...+...|.|+|++.|+.+
T Consensus 31 ~~v~g~sggGlV~V~~~G~~~ 51 (102)
T TIGR00103 31 FEVTGKSGAGLVTVTINGNLE 51 (102)
T ss_pred cEEEEEECCCEEEEEEEcCce
Confidence 455555678899999999754
No 38
>PF04096 Nucleoporin2: Nucleoporin autopeptidase; InterPro: IPR007230 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of autocatalytic serine endopeptidases belong to MEROPS peptidase family S59 (clan SP). The nuclear pore complex protein plays a role in bidirectional transport across the nucleoporin complex in nucleocytoplasmic transport. The mammalian nuclear pore complex (NPC) is comprised of approximately 50 unique proteins, collectively known as nucleoporins. A number of the peptides are synthesised as precursors and undergo self-catalyzed cleavage. The proteolytic cleavage site of yeast Nup145p has been mapped upstream of an evolutionary conserved serine residue. Cleavage occurs at the same site when a precursor is artificially expressed in Escherichia coli. A hydroxyl-containing residue is critical for the reaction, although a thiol-containing residue offers an acceptable replacement. In vitro kinetics experiments using a purified precursor molecule demonstrate that the cleavage is self-catalyzed and that the catalytic domain lies within the N-terminal moiety. Taken altogether, the data are consistent with a proteolytic mechanism involving an N>O acyl rearrangement and a subsequent ester intermediate uncovered in other self-processing proteins []. Nup98 is a component of the nuclear pore that plays its primary role in the export of RNAs. Nup98 is expressed in two forms, derived from alternate mRNA splicing. Both forms are processed into two peptides through autoproteolysis mediated by the C-terminal domain of hNup98. The three-dimensional structure of the C-terminal domain reveals a novel protein fold, and thus a new class of autocatalytic proteases. The structure further reveals that the suggested nucleoporin RNA binding motif is unlikely to bind to RNA []. The following nucleoporins share an ~150-residue C-terminal domain responsible for NPC targeting [, ]: Vertebrate Nup98, a component of the nuclear pore that plays its primary role in the export of RNAs. Yeast Nup100, plays an important role in several nuclear export and import pathways including poly(A)+ RNA and protein transport. Yeast Nup116, involved in mRNA export and protein transport. Yeast Nup145, involved in nuclear poly(A)+ RNA and tRNA export. The NUP C-terminal domains of Nup98 and Nup145 possess peptidase S59 autoproteolytic activity. The autoproteolytic sites of Nup98 and Nup145 each occur immediately C-terminal to the NUP C-terminal domain. Thus, although this domain occurs in the middle of each precursor polypeptide, it winds up at the C-terminal end of the N-terminal cleavage product. Cleavage of the peptide chains are necessary for the proper targeting to the nuclear pore [, ]. The NUP C-terminal domain adopts a predominantly beta-strand structure. The molecule consists of a six-stranded beta-sheet sandwiched against a two-stranded beta-sheet and flanked by alpha-helical regions. The N-terminal helical region consists of two short helices, whereas the stretch on the opposite side of molecule consists of a single, longer helix [, ].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 3PBP_E 2AIV_A 1KO6_A 2Q5X_A 2Q5Y_C 3KEP_A 3KES_A 3NF5_B 3TKN_I.
Probab=31.60 E-value=53 Score=22.29 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=8.1
Q ss_pred CCCCeEEEcccc
Q 035266 39 QEKPALITYPDV 50 (69)
Q Consensus 39 ~~kPailTYHDl 50 (69)
-||||+||.+-+
T Consensus 79 LN~~A~ItL~~~ 90 (141)
T PF04096_consen 79 LNVPAIITLENC 90 (141)
T ss_dssp TCS-EEEEESS-
T ss_pred cCCCEEEEEEee
Confidence 389999998654
No 39
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=31.06 E-value=97 Score=16.97 Aligned_cols=44 Identities=27% Similarity=0.315 Sum_probs=25.7
Q ss_pred CCCCceEEeecCCCCCCeeEEEeCCCceEEEEEecCCCCCeEEE
Q 035266 3 ESSDSVSIDIDMVPFGGKECVVKTSRGSVSVFVCGDQEKPALIT 46 (69)
Q Consensus 3 ~s~~svsid~~~~~~~~~Eh~V~T~~G~v~V~v~Gd~~kPailT 46 (69)
++.++|.|-+..-....+.-.|+-....+++.+.+..+++-.+.
T Consensus 3 Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~ 46 (84)
T cd06463 3 QTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLE 46 (84)
T ss_pred ccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEe
Confidence 55677777666554444445555444578888877544444443
No 40
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=30.89 E-value=71 Score=25.04 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=27.2
Q ss_pred CCCeeEEEeCCCc-eEEEEEecCCCCCeEEEcccc
Q 035266 17 FGGKECVVKTSRG-SVSVFVCGDQEKPALITYPDV 50 (69)
Q Consensus 17 ~~~~Eh~V~T~~G-~v~V~v~Gd~~kPailTYHDl 50 (69)
...-+|...|-+| .+++...|..+.|.|+..|-+
T Consensus 19 ~~~~~hk~~~~~gI~~h~~e~g~~~gP~illlHGf 53 (322)
T KOG4178|consen 19 LSAISHKFVTYKGIRLHYVEGGPGDGPIVLLLHGF 53 (322)
T ss_pred hhhcceeeEEEccEEEEEEeecCCCCCEEEEEccC
Confidence 3445788888777 667888999999999998854
No 41
>COG3411 Ferredoxin [Energy production and conversion]
Probab=30.35 E-value=59 Score=20.21 Aligned_cols=21 Identities=43% Similarity=0.809 Sum_probs=14.9
Q ss_pred ceEEEEEec----CCCCCeEEEccc
Q 035266 29 GSVSVFVCG----DQEKPALITYPD 49 (69)
Q Consensus 29 G~v~V~v~G----d~~kPailTYHD 49 (69)
|+|.++-.| =+..|.++.|+|
T Consensus 1 ~~i~~t~tgCl~~C~~gPvl~vYpe 25 (64)
T COG3411 1 GSIRVTRTGCLGVCQDGPVLVVYPE 25 (64)
T ss_pred CceEEeecchhhhhccCCEEEEecC
Confidence 345556555 357899999998
No 42
>COG4279 Uncharacterized conserved protein [Function unknown]
Probab=30.10 E-value=1e+02 Score=23.90 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=28.6
Q ss_pred CCCeeEEEeCCCceEEEEEecCCCCCeEEEcccccccce
Q 035266 17 FGGKECVVKTSRGSVSVFVCGDQEKPALITYPDVALNCI 55 (69)
Q Consensus 17 ~~~~Eh~V~T~~G~v~V~v~Gd~~kPailTYHDlGLNh~ 55 (69)
-+|+-..++-.-|.|+..|+|.+.+|--+| +|+++.
T Consensus 38 R~GnV~si~i~~g~V~A~VqGS~~~pY~vt---i~~~~~ 73 (266)
T COG4279 38 RNGNVTSIQILEGKVTALVQGSEEEPYVVT---IGIPTF 73 (266)
T ss_pred hcCceEEEEeecceEEEEEecCCCCCeEEE---EecCCC
Confidence 356677777788999999999999998888 455543
No 43
>PRK14626 hypothetical protein; Provisional
Probab=29.86 E-value=65 Score=21.22 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=16.8
Q ss_pred CeeEEEeCCCceEEEEEecCCC
Q 035266 19 GKECVVKTSRGSVSVFVCGDQE 40 (69)
Q Consensus 19 ~~Eh~V~T~~G~v~V~v~Gd~~ 40 (69)
..+...+..-|.|+|++.|+++
T Consensus 30 ~~~v~g~sggG~VkV~~nG~~e 51 (110)
T PRK14626 30 KEEIVVEVGGGMVKVVSNGLGE 51 (110)
T ss_pred ccEEEEEecCcEEEEEEECCcc
Confidence 3456666678899999999764
No 44
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=29.36 E-value=73 Score=22.36 Aligned_cols=38 Identities=8% Similarity=0.160 Sum_probs=26.6
Q ss_pred EEeCCCceEEEEEecCCCCCeEEEcccccccceecchhh
Q 035266 23 VVKTSRGSVSVFVCGDQEKPALITYPDVALNCIVFFFFH 61 (69)
Q Consensus 23 ~V~T~~G~v~V~v~Gd~~kPailTYHDlGLNh~ScF~~f 61 (69)
.++.....++....|..++|.+|-.|-+|-+.. +|..+
T Consensus 113 ~~~~~~~~i~~~~~g~~~~~~vl~~HG~~~~~~-~~~~~ 150 (371)
T PRK14875 113 KARIGGRTVRYLRLGEGDGTPVVLIHGFGGDLN-NWLFN 150 (371)
T ss_pred cceEcCcEEEEecccCCCCCeEEEECCCCCccc-hHHHH
Confidence 444555667777778777899999998887764 35433
No 45
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=28.50 E-value=1.3e+02 Score=17.75 Aligned_cols=34 Identities=9% Similarity=0.161 Sum_probs=23.2
Q ss_pred CeeEEEeCCCc-eEEEEEecCCCCCeEEEcccccc
Q 035266 19 GKECVVKTSRG-SVSVFVCGDQEKPALITYPDVAL 52 (69)
Q Consensus 19 ~~Eh~V~T~~G-~v~V~v~Gd~~kPailTYHDlGL 52 (69)
|.+..|+|.+| .+.|.+....+--..++.+.-|+
T Consensus 16 G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~ 50 (81)
T PF01556_consen 16 GGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGM 50 (81)
T ss_dssp -EEEEEE-TTS-EEEEEETST-STT-EEEETTESE
T ss_pred CCEEEEECCCCCEEEEeccCccCCCcEEeecCCCC
Confidence 45688999999 88888766555556778888887
No 46
>PF08909 DUF1854: Domain of unknown function (DUF1854); InterPro: IPR015005 These protein is functionally uncharacterised. It is found at the C terminus of a number of ATP transporter proteins suggesting it may be involved in ligand binding.
Probab=28.42 E-value=52 Score=22.75 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.9
Q ss_pred eEEEeCCCceEEEEEecC
Q 035266 21 ECVVKTSRGSVSVFVCGD 38 (69)
Q Consensus 21 Eh~V~T~~G~v~V~v~Gd 38 (69)
.-+|+|.+|.-+++++|.
T Consensus 75 ~W~VeTdrG~t~f~l~g~ 92 (133)
T PF08909_consen 75 TWDVETDRGPTRFVLKGE 92 (133)
T ss_pred EEEEEecCCcEEEEEcCc
Confidence 558999999999999994
No 47
>cd02783 MopB_CT_2 The MopB_CT_2 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=28.22 E-value=1.8e+02 Score=19.32 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=22.4
Q ss_pred CCCeeEEEeCCCceEEEEEec--CCCCCeEEEcccccc
Q 035266 17 FGGKECVVKTSRGSVSVFVCG--DQEKPALITYPDVAL 52 (69)
Q Consensus 17 ~~~~Eh~V~T~~G~v~V~v~G--d~~kPailTYHDlGL 52 (69)
..|..-.|+++.|.+.+.+.= .-.+=.|..||=+|.
T Consensus 47 ~dGd~V~v~s~~G~~~~~a~v~~~i~~g~v~~~~~~~~ 84 (156)
T cd02783 47 KDGDWVWVESVNGRVKGQARFTETVEPGTVWTWNAIGK 84 (156)
T ss_pred CCCCEEEEEcCCeeEEEEEEECCCcCCCeEEEEccccc
Confidence 356788999999998766654 333334545544433
No 48
>PRK14627 hypothetical protein; Provisional
Probab=27.50 E-value=78 Score=20.42 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=15.8
Q ss_pred eeEEEeCCCceEEEEEecCCC
Q 035266 20 KECVVKTSRGSVSVFVCGDQE 40 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~v~Gd~~ 40 (69)
++...+...|.|+|++.|+++
T Consensus 27 ~~veg~sggG~VkV~~~G~~~ 47 (100)
T PRK14627 27 TIVEGTAGGGAITVKMNGHRE 47 (100)
T ss_pred cEEEEEEcCCeEEEEEEcCcc
Confidence 455555678899999999764
No 49
>TIGR00628 ung uracil-DNA glycosylase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.28 E-value=53 Score=24.04 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.8
Q ss_pred CCCceEEEEEec-CCCCCeEEEcccccccceecch
Q 035266 26 TSRGSVSVFVCG-DQEKPALITYPDVALNCIVFFF 59 (69)
Q Consensus 26 T~~G~v~V~v~G-d~~kPailTYHDlGLNh~ScF~ 59 (69)
|+...|.|.|-| |+ ||.-|.-|--||+
T Consensus 48 ~p~~~vKVVIlGQDP-------Yh~~gqA~GLaFS 75 (212)
T TIGR00628 48 CPPEDVKVVILGQDP-------YHGPGQAHGLAFS 75 (212)
T ss_pred CChhheEEEEecCCC-------CCCCCCcceeeeE
Confidence 788899999999 77 9999988888886
No 50
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=26.84 E-value=87 Score=24.90 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=31.7
Q ss_pred CCCCCCeeEEEeCC---------CceEEEEEecCCCCCeEEEcccccccceecchh
Q 035266 14 MVPFGGKECVVKTS---------RGSVSVFVCGDQEKPALITYPDVALNCIVFFFF 60 (69)
Q Consensus 14 ~~~~~~~Eh~V~T~---------~G~v~V~v~Gd~~kPailTYHDlGLNh~ScF~~ 60 (69)
.-..+.++-+|+-. .|.++|+-+-..+--|+|+||-=|.|..+ |.+
T Consensus 249 lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA-fsp 303 (323)
T KOG0322|consen 249 LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA-FSP 303 (323)
T ss_pred ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE-eCC
Confidence 44455566666543 24566666666777899999999999886 653
No 51
>PLN02497 probable pectinesterase
Probab=26.74 E-value=80 Score=24.56 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=17.5
Q ss_pred eEEEEEecCCCCCeEEEccccc
Q 035266 30 SVSVFVCGDQEKPALITYPDVA 51 (69)
Q Consensus 30 ~v~V~v~Gd~~kPailTYHDlG 51 (69)
+=.|+++|+...+.+|||.|-+
T Consensus 81 k~~itl~G~g~~~tiIt~~~~~ 102 (331)
T PLN02497 81 KPFIVLVGAGKRRTRIEWDDHD 102 (331)
T ss_pred CCcEEEEecCCCCceEEEeccc
Confidence 3347789998899999998854
No 52
>PLN02432 putative pectinesterase
Probab=26.74 E-value=93 Score=23.74 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=18.5
Q ss_pred CCceEEEEEecCCCCCeEEEccccc
Q 035266 27 SRGSVSVFVCGDQEKPALITYPDVA 51 (69)
Q Consensus 27 ~~G~v~V~v~Gd~~kPailTYHDlG 51 (69)
+..+-.|+++|+.....+|||.|-+
T Consensus 57 p~~k~~itl~G~~~~~TvI~~~~~~ 81 (293)
T PLN02432 57 PADKPFITLSGTQASNTIITWNDGG 81 (293)
T ss_pred eccCceEEEEEcCCCCeEEEecCCc
Confidence 3333446889988888999998764
No 53
>PRK00407 hypothetical protein; Provisional
Probab=26.57 E-value=72 Score=21.43 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=19.6
Q ss_pred CCceEEEEEec---CCCCCe------EEEcccccccc
Q 035266 27 SRGSVSVFVCG---DQEKPA------LITYPDVALNC 54 (69)
Q Consensus 27 ~~G~v~V~v~G---d~~kPa------ilTYHDlGLNh 54 (69)
....+..+.+| |++|.. =+|||++-+..
T Consensus 90 ~~~~l~a~~~Ge~~d~~~H~~~~eVKAvTyh~l~i~~ 126 (139)
T PRK00407 90 DDMTLKAKAWGEKFDPEIHERRTVVKAMTYHDMEIEK 126 (139)
T ss_pred CceEEEEEEEeeecCcccccCCceEEEeecccEEEEE
Confidence 33577788888 566543 48999988754
No 54
>PRK15304 putative fimbrial outer membrane usher protein; Provisional
Probab=26.43 E-value=1.5e+02 Score=25.14 Aligned_cols=43 Identities=7% Similarity=0.098 Sum_probs=28.3
Q ss_pred ceEEeecCCCCCC-----eeEEEeCCCceEEEEEecCCCCCeEEEccc
Q 035266 7 SVSIDIDMVPFGG-----KECVVKTSRGSVSVFVCGDQEKPALITYPD 49 (69)
Q Consensus 7 svsid~~~~~~~~-----~Eh~V~T~~G~v~V~v~Gd~~kPailTYHD 49 (69)
.|+||.+.+|.+. ....|+|..--+.|...-++.++++++.+|
T Consensus 679 ~i~id~~~Lp~dvel~~t~~~VvPt~GAvv~v~F~~~~g~~~l~~l~~ 726 (801)
T PRK15304 679 RVEVNTNTLPKNMDLANGTKMIKAAHGAVSKVDFSVLNQRRVMLNVKR 726 (801)
T ss_pred eEEECccCCCCCEEEccCEEEEEeCCCcEEEEEEEEccceEEEEEEEc
Confidence 6899999998655 233444544444555555777888887665
No 55
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.34 E-value=96 Score=20.65 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=16.0
Q ss_pred eeEEEeCCCceEEEEEecCCC
Q 035266 20 KECVVKTSRGSVSVFVCGDQE 40 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~v~Gd~~ 40 (69)
+|..-+...|.|+|++.|+.+
T Consensus 31 ~ev~g~aggGlVtV~~~G~~e 51 (105)
T COG0718 31 KEVTGKAGGGLVTVTINGKGE 51 (105)
T ss_pred cEEeeecCCcEEEEEEeCCCc
Confidence 455555677799999999875
No 56
>PLN02665 pectinesterase family protein
Probab=26.09 E-value=97 Score=24.44 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=17.0
Q ss_pred eEEEEEecCCCCCeEEEccccc
Q 035266 30 SVSVFVCGDQEKPALITYPDVA 51 (69)
Q Consensus 30 ~v~V~v~Gd~~kPailTYHDlG 51 (69)
+=.|+++|+...+++|||.|-+
T Consensus 117 kp~Itl~G~~~~~tiIt~~~~a 138 (366)
T PLN02665 117 KPFVTLYGSPGAMPTLTFDGTA 138 (366)
T ss_pred CCEEEEEecCCCCCEEEECCcc
Confidence 3347899988888899998743
No 57
>PRK14623 hypothetical protein; Provisional
Probab=25.97 E-value=83 Score=20.76 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=15.9
Q ss_pred eeEEEeCCCceEEEEEecCCC
Q 035266 20 KECVVKTSRGSVSVFVCGDQE 40 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~v~Gd~~ 40 (69)
.+...+..-|.|+|++.|+++
T Consensus 27 ~~v~g~sggG~VkVt~~G~~~ 47 (106)
T PRK14623 27 VLIDEQSSDGLLKVTVTANRE 47 (106)
T ss_pred cEEEEEECCceEEEEEEcCcc
Confidence 455555678899999999764
No 58
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=25.73 E-value=81 Score=21.07 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=10.2
Q ss_pred EEEEEecCCCCCeEEE
Q 035266 31 VSVFVCGDQEKPALIT 46 (69)
Q Consensus 31 v~V~v~Gd~~kPailT 46 (69)
.+|.+.|. .||+.+-
T Consensus 127 ~~~~~~~~-~~p~~~~ 141 (149)
T cd03450 127 VTVEIEGE-DKPACVA 141 (149)
T ss_pred EEEEEeCC-CCceEEE
Confidence 45667776 7888763
No 59
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=25.52 E-value=21 Score=27.29 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=13.0
Q ss_pred ceecchhhhhheee
Q 035266 54 CIVFFFFHFFIFFI 67 (69)
Q Consensus 54 h~ScF~~fF~~~~~ 67 (69)
+|+||+++|+++|+
T Consensus 215 ~K~ky~~~Fd~ifv 228 (289)
T PF14740_consen 215 HKSKYQNFFDLIFV 228 (289)
T ss_pred hHHhhcCCCCEEEE
Confidence 79999999999986
No 60
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=25.10 E-value=1.5e+02 Score=22.52 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.3
Q ss_pred eeEEEeCCCceEEEEEecCCCCCeEEE
Q 035266 20 KECVVKTSRGSVSVFVCGDQEKPALIT 46 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~v~Gd~~kPailT 46 (69)
++-.|.+|.|.|.+...++. +|.++|
T Consensus 234 ~~v~V~~pGG~L~i~~~~~g-~~v~m~ 259 (272)
T COG0253 234 RKVTVHLPGGTLEIEWKDDG-KPVYMT 259 (272)
T ss_pred CcEEEEcCCCeEEEEEEcCC-ceEEEE
Confidence 46889999999999999884 477776
No 61
>PF12528 DUF3728: Prepilin peptidase dependent protein C (DUF3728); InterPro: IPR022204 This family of proteins is found in bacteria. Proteins in this family are typically between 106 and 121 amino acids in length. The family is found in association with PF07963 from PFAM. There are two completely conserved C residues that may be functionally important. This family is frequently annotated as prepilin peptidase dependent protein C however there is little accompanying literature to confirm this.
Probab=25.00 E-value=1.7e+02 Score=18.25 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=27.2
Q ss_pred EEeecCCCCCCeeEEEeCC--Cc--eEEEEEecCCCCCeEEE
Q 035266 9 SIDIDMVPFGGKECVVKTS--RG--SVSVFVCGDQEKPALIT 46 (69)
Q Consensus 9 sid~~~~~~~~~Eh~V~T~--~G--~v~V~v~Gd~~kPailT 46 (69)
....+.+|.+.+-...+|. -| .|+|+|..-.++++-|+
T Consensus 36 ~~~~~~~~~gWq~~~~~~~~~~~C~~itvtv~tP~~~~a~Ls 77 (84)
T PF12528_consen 36 PPALSGPPPGWQYSRQQTSIQGGCRSITVTVTTPQNQQAQLS 77 (84)
T ss_pred cccccCCCCCceeeeeeeccCCCeEEEEEEEecCCCccccce
Confidence 3445567788888888875 33 67888888888887654
No 62
>PLN02304 probable pectinesterase
Probab=24.97 E-value=93 Score=24.80 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=21.1
Q ss_pred EEEeCCCceEEEEEecCCCCCeEEEccccc
Q 035266 22 CVVKTSRGSVSVFVCGDQEKPALITYPDVA 51 (69)
Q Consensus 22 h~V~T~~G~v~V~v~Gd~~kPailTYHDlG 51 (69)
+.|.-+..+=.|+++|+.....+|||.|-+
T Consensus 116 EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a 145 (379)
T PLN02304 116 EKVTVPKTKPNITFQGQGFDSTAIAWNDTA 145 (379)
T ss_pred EEEEECCCCCcEEEEecCCCCcEEEccCcc
Confidence 334444444458899988889999998753
No 63
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=24.71 E-value=1.5e+02 Score=17.07 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=7.0
Q ss_pred EEEeCCCceE
Q 035266 22 CVVKTSRGSV 31 (69)
Q Consensus 22 h~V~T~~G~v 31 (69)
..|+|+.+.+
T Consensus 61 ~~V~T~~~~i 70 (98)
T PF04773_consen 61 FEVRTPTATI 70 (98)
T ss_pred EEEEeCCEEE
Confidence 7777776664
No 64
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=24.29 E-value=1e+02 Score=25.55 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=23.1
Q ss_pred eEEEeCCCceEEEEEecCCCCCeEEEccccccc
Q 035266 21 ECVVKTSRGSVSVFVCGDQEKPALITYPDVALN 53 (69)
Q Consensus 21 Eh~V~T~~G~v~V~v~Gd~~kPailTYHDlGLN 53 (69)
++.|.-+..+-.|++.|+...+.||||.+-.-+
T Consensus 237 ~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~ 269 (509)
T PLN02488 237 DEIVRIGSTKPNLTLIGDGQDSTIITGNLSASN 269 (509)
T ss_pred EEEEEecCCCccEEEEecCCCceEEEEcccccC
Confidence 344444544555889999999999999875443
No 65
>PLN02682 pectinesterase family protein
Probab=24.25 E-value=93 Score=24.64 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=20.4
Q ss_pred EEEeCCCceEEEEEecCCCCCeEEEccccc
Q 035266 22 CVVKTSRGSVSVFVCGDQEKPALITYPDVA 51 (69)
Q Consensus 22 h~V~T~~G~v~V~v~Gd~~kPailTYHDlG 51 (69)
+.|.-+..+=.|+++|+.....+|||-|=+
T Consensus 111 EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a 140 (369)
T PLN02682 111 EKVNIPPLKAYITLEGAGADKTIIQWGDTA 140 (369)
T ss_pred EEEEEeccCceEEEEecCCCccEEEecccc
Confidence 334333333458899988888999997654
No 66
>PRK14629 hypothetical protein; Provisional
Probab=24.10 E-value=99 Score=20.20 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=15.7
Q ss_pred eeEEEeCCCceEEEEEecCCC
Q 035266 20 KECVVKTSRGSVSVFVCGDQE 40 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~v~Gd~~ 40 (69)
.+..-+...|.|+|++.|+++
T Consensus 29 ~~veg~aggGlVkV~~nG~~~ 49 (99)
T PRK14629 29 IVVCGRAGSDVVVVEMNGEFN 49 (99)
T ss_pred cEEEEEecCCEEEEEEEcCcc
Confidence 445555678899999999764
No 67
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=23.93 E-value=1.1e+02 Score=18.22 Aligned_cols=36 Identities=22% Similarity=0.051 Sum_probs=23.2
Q ss_pred CCCeeEEEeCCCceEEEEEec--CCCCCeEEEcccccc
Q 035266 17 FGGKECVVKTSRGSVSVFVCG--DQEKPALITYPDVAL 52 (69)
Q Consensus 17 ~~~~Eh~V~T~~G~v~V~v~G--d~~kPailTYHDlGL 52 (69)
..++.-+|.+++|.+.+.++= .-.+=.+..++=.|.
T Consensus 45 ~~Gd~V~v~s~~G~v~~~v~~~~~v~~g~v~~~~~~~~ 82 (110)
T PF01568_consen 45 KDGDWVRVSSPRGSVEVRVKVTDGVPPGVVFMPHGWGG 82 (110)
T ss_dssp -TTCEEEEEETTEEEEEEEEEETTS-TTEEEEESTHTT
T ss_pred cCCCEEEEEeccceEeeeeEEecCCcCCEEEEeccccc
Confidence 456788999999998877654 334445555555444
No 68
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=23.37 E-value=47 Score=24.90 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=13.1
Q ss_pred CCCCCeEEEcccccccceecc
Q 035266 38 DQEKPALITYPDVALNCIVFF 58 (69)
Q Consensus 38 d~~kPailTYHDlGLNh~ScF 58 (69)
+++.|+||.||.-|-+...-+
T Consensus 80 ~~~~Pavv~~hGyg~~~~~~~ 100 (320)
T PF05448_consen 80 KGKLPAVVQFHGYGGRSGDPF 100 (320)
T ss_dssp SSSEEEEEEE--TT--GGGHH
T ss_pred CCCcCEEEEecCCCCCCCCcc
Confidence 578999999999998855433
No 69
>PF13345 DUF4098: Domain of unknown function (DUF4098)
Probab=23.03 E-value=1.4e+02 Score=16.15 Aligned_cols=15 Identities=33% Similarity=0.353 Sum_probs=9.2
Q ss_pred eeEEEeCCCceEEEE
Q 035266 20 KECVVKTSRGSVSVF 34 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~ 34 (69)
+.-.++|..|.|++.
T Consensus 43 ~~~~~~~~~G~i~~~ 57 (76)
T PF13345_consen 43 SSIKVSTSSGDISLE 57 (76)
T ss_pred eeeeeeccccCEEEe
Confidence 455666777776544
No 70
>PHA03200 uracil DNA glycosylase; Provisional
Probab=22.59 E-value=69 Score=24.39 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.1
Q ss_pred eCCCceEEEEEec-CCCCCeEEEcccccccceecch
Q 035266 25 KTSRGSVSVFVCG-DQEKPALITYPDVALNCIVFFF 59 (69)
Q Consensus 25 ~T~~G~v~V~v~G-d~~kPailTYHDlGLNh~ScF~ 59 (69)
.|+.-.|.|.|-| |+ ||. |.-|--||+
T Consensus 79 ~tp~~~vKVVIlGQDP-------Yh~-gqA~GLaFS 106 (255)
T PHA03200 79 LCSPEDVKVVIVGQDP-------YHD-GSACGLAFG 106 (255)
T ss_pred cCChhheEEEEEecCC-------CCC-CccceEEEE
Confidence 3788889999999 77 999 999988886
No 71
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=22.48 E-value=1.5e+02 Score=20.67 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=14.0
Q ss_pred CceEEEE-EecCC--CCCeEEEccc
Q 035266 28 RGSVSVF-VCGDQ--EKPALITYPD 49 (69)
Q Consensus 28 ~G~v~V~-v~Gd~--~kPailTYHD 49 (69)
.|..|++ |.|+. +.|+++=.|-
T Consensus 25 ~~~~H~ALvkG~i~~~~~~lVRvH~ 49 (191)
T TIGR00505 25 TGKDHVALVKGDISAHTDVLVRIHS 49 (191)
T ss_pred CCcEEEEEEeCCCCCCCCceEEEec
Confidence 4455544 46854 6788987775
No 72
>PRK05254 uracil-DNA glycosylase; Provisional
Probab=22.13 E-value=71 Score=23.46 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCCceEEEEEec-CCCCCeEEEcccccccceecch
Q 035266 26 TSRGSVSVFVCG-DQEKPALITYPDVALNCIVFFF 59 (69)
Q Consensus 26 T~~G~v~V~v~G-d~~kPailTYHDlGLNh~ScF~ 59 (69)
|+...|.|.|-| |+ ||.-|.-|--||+
T Consensus 54 ~p~~~vKVVIlGQDP-------Y~~~gqA~GLaFS 81 (224)
T PRK05254 54 TPFDDVKVVILGQDP-------YHGPGQAHGLSFS 81 (224)
T ss_pred CCHhHeEEEEEecCC-------CCCCCCcceEeee
Confidence 688899999999 76 9998888888886
No 73
>PRK15213 fimbrial outer membrane usher protein PefC; Provisional
Probab=21.93 E-value=1.7e+02 Score=24.77 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=27.9
Q ss_pred ceEEeecCCCCCC-----eeEEEeCCCceEEEEEecCCCCCeEEEccc
Q 035266 7 SVSIDIDMVPFGG-----KECVVKTSRGSVSVFVCGDQEKPALITYPD 49 (69)
Q Consensus 7 svsid~~~~~~~~-----~Eh~V~T~~G~v~V~v~Gd~~kPailTYHD 49 (69)
.|+||.+.+|.+. ....|+|..--+.+...-++.++++++..|
T Consensus 685 ~i~iD~~~LP~dvel~~t~~~vvPt~gAvv~~~F~~~~g~~~ll~l~~ 732 (797)
T PRK15213 685 TVTVNAENLPLNTELTTTSQNVVPTDKAVVYREFKALKVLRYILRVKQ 732 (797)
T ss_pred eEEECccCCCCCEEecccEEEEEecCCcEEEEEEEEEeeeEEEEEEEc
Confidence 6899999998655 233444544444455555777778887766
No 74
>PHA03347 uracil DNA glycosylase; Provisional
Probab=21.86 E-value=66 Score=24.42 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.7
Q ss_pred CCCceEEEEEec-CCCCCeEEEcccccccceecch
Q 035266 26 TSRGSVSVFVCG-DQEKPALITYPDVALNCIVFFF 59 (69)
Q Consensus 26 T~~G~v~V~v~G-d~~kPailTYHDlGLNh~ScF~ 59 (69)
|+.-.|.|.|-| |+ ||+ |.-|--||+
T Consensus 74 tp~~~vKVVIlGQDP-------Yh~-gqA~GLaFS 100 (252)
T PHA03347 74 CDPEDIKVVILGQDP-------YHG-GQANGLAFS 100 (252)
T ss_pred CChhHcEEEEEecCC-------CCC-CccceEEEe
Confidence 678889999999 76 999 999998886
No 75
>PRK14625 hypothetical protein; Provisional
Probab=21.85 E-value=1.1e+02 Score=20.27 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=15.8
Q ss_pred eeEEEeCCCceEEEEEecCCC
Q 035266 20 KECVVKTSRGSVSVFVCGDQE 40 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~v~Gd~~ 40 (69)
.+..-+...|.|+|++.|+++
T Consensus 28 ~~v~g~sggG~VkV~~~G~~~ 48 (109)
T PRK14625 28 TTVEGTSGGGMVTVTLMGNGE 48 (109)
T ss_pred cEEEEEECCCeEEEEEecCce
Confidence 455555678899999999764
No 76
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=21.83 E-value=2.2e+02 Score=20.46 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=27.6
Q ss_pred eeEEEeCCCc-eEEEEEecC---CCCCeEEEcccccccceecchh
Q 035266 20 KECVVKTSRG-SVSVFVCGD---QEKPALITYPDVALNCIVFFFF 60 (69)
Q Consensus 20 ~Eh~V~T~~G-~v~V~v~Gd---~~kPailTYHDlGLNh~ScF~~ 60 (69)
+|....++.| .+.+...+. +.||+||=.|-+|.+....+..
T Consensus 62 ~~~~~~~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~~~~~~~ 106 (349)
T PLN02385 62 EESYEVNSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTCTFFFEG 106 (349)
T ss_pred eeeeEEcCCCCEEEEEEEecCCCCCCeEEEEECCCCCccchHHHH
Confidence 4555666777 566656552 4588999999999886544443
No 77
>PRK03762 hypothetical protein; Provisional
Probab=21.55 E-value=1.1e+02 Score=20.02 Aligned_cols=21 Identities=43% Similarity=0.460 Sum_probs=15.6
Q ss_pred eeEEEeCCCceEEEEEecCCC
Q 035266 20 KECVVKTSRGSVSVFVCGDQE 40 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~v~Gd~~ 40 (69)
++...+..-|.|+|++.|+++
T Consensus 31 ~~v~g~sggGlVkV~~nG~~~ 51 (103)
T PRK03762 31 KEFTAKSGGGLVSVSANGKGE 51 (103)
T ss_pred cEEEEEEcCceEEEEEEcCce
Confidence 444555567899999999764
No 78
>PRK14622 hypothetical protein; Provisional
Probab=21.55 E-value=1.2e+02 Score=19.75 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=15.3
Q ss_pred eeEEEeCCCceEEEEEecCCC
Q 035266 20 KECVVKTSRGSVSVFVCGDQE 40 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~v~Gd~~ 40 (69)
.+..-+...|.|+|++.|+.+
T Consensus 27 ~~v~g~sggG~VkV~~nG~~~ 47 (103)
T PRK14622 27 IAVEAESGGGLVKVAMNGKCE 47 (103)
T ss_pred cEEEEEECCceEEEEEEcCce
Confidence 344555567899999999764
No 79
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=21.52 E-value=38 Score=22.50 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=17.2
Q ss_pred EEeCCC-ceEEEEEecCCCCCeEEEcccc
Q 035266 23 VVKTSR-GSVSVFVCGDQEKPALITYPDV 50 (69)
Q Consensus 23 ~V~T~~-G~v~V~v~Gd~~kPailTYHDl 50 (69)
+|+|+. |.+.-+| +-|..|+|+|+
T Consensus 4 RIk~p~gg~vDw~V----~~~~~L~F~Dv 28 (91)
T cd06395 4 RIKIPNGGAVDWTV----QSGPQLLFRDV 28 (91)
T ss_pred EEeCCCCCcccccc----cCcccccHHHH
Confidence 678888 4666665 55778888886
No 80
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=21.42 E-value=1.4e+02 Score=15.57 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=25.2
Q ss_pred CCCCceEEeecCCCCCCeeEEEeCCCceEEEEEecC
Q 035266 3 ESSDSVSIDIDMVPFGGKECVVKTSRGSVSVFVCGD 38 (69)
Q Consensus 3 ~s~~svsid~~~~~~~~~Eh~V~T~~G~v~V~v~Gd 38 (69)
++.+.+.|-++......++-+|+...+.|.|..+..
T Consensus 3 q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~ 38 (80)
T cd00298 3 QTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKRE 38 (80)
T ss_pred EcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEc
Confidence 456677777776666677778887667877776653
No 81
>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2VPZ_A 2VPY_A 2VPW_A 2VPX_A 2NYA_A 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 ....
Probab=21.35 E-value=76 Score=17.41 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=12.2
Q ss_pred EEeCCCceEEEEEecCCCCCe
Q 035266 23 VVKTSRGSVSVFVCGDQEKPA 43 (69)
Q Consensus 23 ~V~T~~G~v~V~v~Gd~~kPa 43 (69)
++++..|.+ +.|.|+++.|.
T Consensus 18 ~~~v~~g~i-~~v~g~~~~p~ 37 (55)
T PF04879_consen 18 DVYVKDGKI-VKVEGDPDHPI 37 (55)
T ss_dssp EEEEETTEE-EEEEE-TTSTT
T ss_pred EEEEecCce-EEEECCCCCCC
Confidence 445566666 57888777664
No 82
>PF09922 DUF2154: Cell wall-active antibiotics response protein (DUF2154); InterPro: IPR024425 This domain is found in various prokaryotic proteins, including cell wall-active antibiotic response proteins.
Probab=20.88 E-value=1.8e+02 Score=18.41 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=19.3
Q ss_pred CceEEeecCCCCCCe--eEEEeCCCceEEEEE
Q 035266 6 DSVSIDIDMVPFGGK--ECVVKTSRGSVSVFV 35 (69)
Q Consensus 6 ~svsid~~~~~~~~~--Eh~V~T~~G~v~V~v 35 (69)
+++.||+....+... .-.|....|.+.|+|
T Consensus 25 G~~~lDl~~a~l~~~~~~i~i~~~~G~v~I~V 56 (115)
T PF09922_consen 25 GDVTLDLSQAQLPEGETVIDIDAGFGDVTIYV 56 (115)
T ss_pred CCEEEECCCCCcCCCCEEEEEEEEEcCEEEEE
Confidence 467888886665443 334556778877775
No 83
>PF10033 ATG13: Autophagy-related protein 13; InterPro: IPR018731 Members of this family of phosphoproteins are involved in cytoplasm to vacuole transport (Cvt), and more specifically in Cvt vesicle formation. They are probably involved in the switching machinery regulating the conversion between the Cvt pathway and autophagy. Finally, ATG13 is also required for glycogen storage [, , ].
Probab=20.60 E-value=68 Score=23.03 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=11.5
Q ss_pred EEeCCCceEEEEEe
Q 035266 23 VVKTSRGSVSVFVC 36 (69)
Q Consensus 23 ~V~T~~G~v~V~v~ 36 (69)
.|+|+.|.+++.|.
T Consensus 213 pv~Tp~G~L~isV~ 226 (233)
T PF10033_consen 213 PVETPLGSLCISVS 226 (233)
T ss_pred CcccCCccEEEEEE
Confidence 46799999998873
No 84
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=20.59 E-value=1.5e+02 Score=22.37 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=21.1
Q ss_pred CceEEeecCCCC-------CCeeEEEeCCCceEEEE
Q 035266 6 DSVSIDIDMVPF-------GGKECVVKTSRGSVSVF 34 (69)
Q Consensus 6 ~svsid~~~~~~-------~~~Eh~V~T~~G~v~V~ 34 (69)
.|||++++++.. .+.+-+|+-++|.++..
T Consensus 154 ESMs~~l~~Ld~~~~~l~l~~~~l~v~GKRG~v~L~ 189 (218)
T PF12119_consen 154 ESMSFELDRLDFTSPELELAGATLEVDGKRGDVTLN 189 (218)
T ss_pred EeeEEEecccCCCCCeeEeccceeEeecceeeEEEE
Confidence 589999997764 44667777788877643
No 85
>PRK13970 hydroxyproline-2-epimerase; Provisional
Probab=20.54 E-value=1.5e+02 Score=23.02 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=19.9
Q ss_pred EEeecCCCCCCeeEEEeCCCceEEEEEec
Q 035266 9 SIDIDMVPFGGKECVVKTSRGSVSVFVCG 37 (69)
Q Consensus 9 sid~~~~~~~~~Eh~V~T~~G~v~V~v~G 37 (69)
-++..+++. .++.++|+-|.|.+.++.
T Consensus 100 l~e~G~v~~--~~~~ieTpaG~v~v~~~~ 126 (311)
T PRK13970 100 LHHMGRIGP--GVHRIETPVGTVEATLHD 126 (311)
T ss_pred eeecceecC--CcEEEEcCCceEEEEEEC
Confidence 345556663 345999999999999884
No 86
>PF13734 Inhibitor_I69: Spi protease inhibitor; PDB: 1PVJ_A 1DKI_D 2UZJ_A 2JTC_A 4D8E_A 4D8I_A 4D8B_A.
Probab=20.50 E-value=96 Score=20.08 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=17.2
Q ss_pred CCceEEEEEecCCCCCeEEEccccc
Q 035266 27 SRGSVSVFVCGDQEKPALITYPDVA 51 (69)
Q Consensus 27 ~~G~v~V~v~Gd~~kPailTYHDlG 51 (69)
..|- |.|.||..-|.||-|=|=|
T Consensus 50 ~~GF--VIVSgDdr~~~ILaYS~~G 72 (96)
T PF13734_consen 50 NKGF--VIVSGDDRMGPILAYSDEG 72 (96)
T ss_dssp TS-E--EEEESBTTS-SEEEEESSS
T ss_pred CCEE--EEEECCCCccceeEEcCCC
Confidence 4454 7899999999999998755
No 87
>PRK14621 hypothetical protein; Provisional
Probab=20.34 E-value=1.1e+02 Score=20.20 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=15.0
Q ss_pred eeEEEeCCCceEEEEEecCCC
Q 035266 20 KECVVKTSRGSVSVFVCGDQE 40 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~v~Gd~~ 40 (69)
.+..-+..-|.|+|++.|+++
T Consensus 30 ~~v~g~sGgG~VkV~~~G~~~ 50 (111)
T PRK14621 30 LVAHGEAGGGMVKASVNGKQK 50 (111)
T ss_pred cEEEEEECCceEEEEEEcCce
Confidence 344444567899999999765
No 88
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=20.14 E-value=1.1e+02 Score=21.61 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=15.1
Q ss_pred CCCCCCeeEEEeCCCc-eEEEEEecC
Q 035266 14 MVPFGGKECVVKTSRG-SVSVFVCGD 38 (69)
Q Consensus 14 ~~~~~~~Eh~V~T~~G-~v~V~v~Gd 38 (69)
.|.+...-.+++-+.| .|.+++.|+
T Consensus 118 AIdF~~~v~k~~dp~Gdrv~it~~GK 143 (150)
T TIGR00673 118 AIDFKLDVEKVADPGGERAVITLNGK 143 (150)
T ss_pred eeeeceeeeeecCCCCCEEEEEeccc
Confidence 3444444556666777 467777774
No 89
>PF07880 T4_gp9_10: Bacteriophage T4 gp9/10-like protein; InterPro: IPR008987 The Bacteriophage T4 is a double-stranded, structurally complex virus that infects Escherichia coli. Gene product 9 (gp9) connects the long tail fibres to the baseplate, and triggers baseplate reorganisation and tail contraction after virus attachment to the host cell. The gp9 protein forms a homotrimer, with each monomer having three domains: the N-terminal alpha-helical domain forms a triple coiled coil, the middle domain is a mixed, seven-stranded beta sandwich with a unique fold, and the C-terminal domain is a eight-stranded beta-sandwich with similarity to jellyroll viral capsid protein structures []. The flexible loops that occur between domains may enable the conformational changes necessary during infection. ; GO: 0019058 viral infectious cycle; PDB: 1QEX_B 1ZKU_G 1S2E_B.
Probab=20.14 E-value=1.3e+02 Score=23.35 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=12.1
Q ss_pred CCeeEEEeCCCceEEEEE-ec--CCCCCe
Q 035266 18 GGKECVVKTSRGSVSVFV-CG--DQEKPA 43 (69)
Q Consensus 18 ~~~Eh~V~T~~G~v~V~v-~G--d~~kPa 43 (69)
-++-|+|.|+.|.|+|.+ .| |.++..
T Consensus 74 ~Gs~~dIdTS~G~itv~LpkG~~~~ge~I 102 (278)
T PF07880_consen 74 FGSSYDIDTSSGAITVNLPKGVADYGEVI 102 (278)
T ss_dssp TT-EEE---SSS-EEEEE------TT-EE
T ss_pred cCCcEEEecCCccEEEEecCCccccCceE
Confidence 457789999999988886 56 544433
No 90
>PRK03592 haloalkane dehalogenase; Provisional
Probab=20.06 E-value=2.6e+02 Score=19.12 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=26.9
Q ss_pred eeEEEeCCCceEEEEEecCCCCCeEEEcccccccceecchhhh
Q 035266 20 KECVVKTSRGSVSVFVCGDQEKPALITYPDVALNCIVFFFFHF 62 (69)
Q Consensus 20 ~Eh~V~T~~G~v~V~v~Gd~~kPailTYHDlGLNh~ScF~~fF 62 (69)
+-+.+++....+++...| ++|+||=.|-++.+.. +|..+.
T Consensus 8 ~~~~~~~~g~~i~y~~~G--~g~~vvllHG~~~~~~-~w~~~~ 47 (295)
T PRK03592 8 EMRRVEVLGSRMAYIETG--EGDPIVFLHGNPTSSY-LWRNII 47 (295)
T ss_pred cceEEEECCEEEEEEEeC--CCCEEEEECCCCCCHH-HHHHHH
Confidence 334455545578888888 4588999999887763 566543
Done!