Query 035267
Match_columns 69
No_of_seqs 91 out of 115
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 17:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035267.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035267hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 30.8 22 0.0016 18.2 2.7 17 47-63 14-30 (37)
2 d1hbnb2 d.58.31.2 (B:2-188) Be 20.8 8.7 0.00063 25.8 -0.3 29 21-50 111-142 (187)
3 d1e32a3 d.31.1.1 (A:107-200) M 18.6 21 0.0015 21.1 1.2 24 17-40 40-63 (94)
4 d1x4ka2 g.39.1.3 (A:8-34) Four 16.3 28 0.002 16.7 1.1 10 25-35 9-18 (27)
5 d1uf3a_ d.159.1.6 (A:) Hypothe 15.6 29 0.0021 19.4 1.3 15 22-38 214-228 (228)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 14.8 65 0.0048 15.5 2.4 15 48-62 7-21 (30)
7 d1jb0m_ f.23.19.1 (M:) Subunit 12.6 22 0.0016 17.5 0.1 12 11-22 10-21 (31)
8 d1rqpa1 b.141.1.1 (A:193-298) 11.0 17 0.0012 20.8 -0.8 16 27-42 12-29 (106)
9 d1tmka_ c.37.1.1 (A:) Thymidyl 10.6 77 0.0056 18.9 2.3 23 27-49 1-23 (214)
10 d1e6yb2 d.58.31.2 (B:2002-2185 8.9 20 0.0015 23.8 -1.1 30 21-50 108-139 (184)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=30.78 E-value=22 Score=18.15 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 035267 47 HSLIFFILYAILILAVH 63 (69)
Q Consensus 47 Ha~ifF~l~~if~~ai~ 63 (69)
+|-+|.+++.||.+++-
T Consensus 14 rtsLy~GlLlifvl~vL 30 (37)
T d2axtl1 14 RTSLYLGLLLILVLALL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46688888888888764
No 2
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.84 E-value=8.7 Score=25.77 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=24.0
Q ss_pred eeEeecCCCc---eeeecCCcccHHHHHHHHHH
Q 035267 21 LLFQLPGHNR---QLEFGSMKTNGKAIAVHSLI 50 (69)
Q Consensus 21 LLfQ~PG~~r---~veFgn~~Tsg~si~VHa~i 50 (69)
+|.|+|-+ | --||..--|+..+.++|++|
T Consensus 111 llvqvPs~-Ri~~aa~Y~v~~t~~~~A~~~aIi 142 (187)
T d1hbnb2 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (187)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HHhhhhhhhHHHHHHHHHHHHHHH
Confidence 78999954 4 56888888999999999987
No 3
>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2, P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.64 E-value=21 Score=21.06 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=19.7
Q ss_pred hccceeEeecCCCceeeecCCccc
Q 035267 17 LQPGLLFQLPGHNRQLEFGSMKTN 40 (69)
Q Consensus 17 LsPGLLfQ~PG~~r~veFgn~~Ts 40 (69)
++.|=.|.+-|..|.|||-=++|.
T Consensus 40 v~~gD~f~v~g~~r~VEFKVv~~d 63 (94)
T d1e32a3 40 IRKGDIFLVRGGMRAVEFKVVETD 63 (94)
T ss_dssp EETTCEEEEEETTEEEEEEEEEES
T ss_pred ccCCCEEEEccCCeeEEEEEEeec
Confidence 467889999999999999766553
No 4
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.30 E-value=28 Score=16.73 Aligned_cols=10 Identities=40% Similarity=1.109 Sum_probs=7.2
Q ss_pred ecCCCceeeec
Q 035267 25 LPGHNRQLEFG 35 (69)
Q Consensus 25 ~PG~~r~veFg 35 (69)
+||. |..||-
T Consensus 9 MPGs-rKme~k 18 (27)
T d1x4ka2 9 MPGT-RKMEYK 18 (27)
T ss_dssp CSSS-CEEEET
T ss_pred cCCc-eeeccc
Confidence 6886 588874
No 5
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=15.59 E-value=29 Score=19.40 Aligned_cols=15 Identities=33% Similarity=0.662 Sum_probs=10.4
Q ss_pred eEeecCCCceeeecCCc
Q 035267 22 LFQLPGHNRQLEFGSMK 38 (69)
Q Consensus 22 LfQ~PG~~r~veFgn~~ 38 (69)
+.++.++ .+||||.+
T Consensus 214 ~i~~~~~--~ie~~~~~ 228 (228)
T d1uf3a_ 214 LLDLRAR--KLETGNVR 228 (228)
T ss_dssp EEETTTT--EEEEEECC
T ss_pred EEEccCC--EEEEEeeC
Confidence 4566555 89999864
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.78 E-value=65 Score=15.50 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q 035267 48 SLIFFILYAILILAV 62 (69)
Q Consensus 48 a~ifF~l~~if~~ai 62 (69)
.+||-+++.+|..|+
T Consensus 7 v~ifac~i~lfffai 21 (30)
T d2axtt1 7 VFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777777775
No 7
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=12.64 E-value=22 Score=17.53 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=8.2
Q ss_pred HHHHHHhcccee
Q 035267 11 VLLFVLLQPGLL 22 (69)
Q Consensus 11 vvLFvlLsPGLL 22 (69)
++|-+.|.||.|
T Consensus 10 valvial~pg~l 21 (31)
T d1jb0m_ 10 VALVIALLPAVL 21 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677888865
No 8
>d1rqpa1 b.141.1.1 (A:193-298) 5'-fluoro-5'-deoxyadenosine synthase {Streptomyces cattleya [TaxId: 29303]}
Probab=11.03 E-value=17 Score=20.84 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=11.0
Q ss_pred CCCceee--ecCCcccHH
Q 035267 27 GHNRQLE--FGSMKTNGK 42 (69)
Q Consensus 27 G~~r~ve--Fgn~~Tsg~ 42 (69)
|.-..+| |||..||..
T Consensus 12 G~V~~iDh~FGN~iTNI~ 29 (106)
T d1rqpa1 12 GVVSAIDHPFGNVWTNIH 29 (106)
T ss_dssp EEEEEEETTTTEEEEEEE
T ss_pred EEEEEEecCCCcEEEecC
Confidence 3334567 999999854
No 9
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.62 E-value=77 Score=18.90 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=17.9
Q ss_pred CCCceeeecCCcccHHHHHHHHH
Q 035267 27 GHNRQLEFGSMKTNGKAIAVHSL 49 (69)
Q Consensus 27 G~~r~veFgn~~Tsg~si~VHa~ 49 (69)
||++.+-|=+..-||+|-.++.+
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L 23 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNIL 23 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEECCCCCcHHHHHHHH
Confidence 67888888788888888777754
No 10
>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=8.87 E-value=20 Score=23.81 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=23.2
Q ss_pred eeEeecCCCc--eeeecCCcccHHHHHHHHHH
Q 035267 21 LLFQLPGHNR--QLEFGSMKTNGKAIAVHSLI 50 (69)
Q Consensus 21 LLfQ~PG~~r--~veFgn~~Tsg~si~VHa~i 50 (69)
+|.|+|-+.- --||..--|+..+.++||+|
T Consensus 108 llvqvPs~Ri~~aa~Y~~~~t~~~~A~~~aIi 139 (184)
T d1e6yb2 108 LLIQSPKSRIIAGADFMSATTVGAAAVTQTIM 139 (184)
T ss_dssp EEEECCHHHHHTSSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHhhhcchhHHHHHHHHHHHHHHH
Confidence 7889995421 25788888999999999987
Done!