Query 035269
Match_columns 69
No_of_seqs 90 out of 116
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 17:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035269.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035269hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 31.5 21 0.0016 18.2 2.7 17 47-63 14-30 (37)
2 d1hbnb2 d.58.31.2 (B:2-188) Be 26.3 6.3 0.00046 26.5 -0.1 29 21-50 111-142 (187)
3 d1uf3a_ d.159.1.6 (A:) Hypothe 17.9 23 0.0017 19.9 1.2 15 22-38 214-228 (228)
4 d1e32a3 d.31.1.1 (A:107-200) M 16.7 24 0.0018 20.8 1.2 24 17-40 40-63 (94)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 15.1 63 0.0046 15.6 2.4 15 48-62 7-21 (30)
6 d1jb0m_ f.23.19.1 (M:) Subunit 13.8 20 0.0015 17.7 0.2 12 11-22 10-21 (31)
7 d1tmka_ c.37.1.1 (A:) Thymidyl 11.6 75 0.0055 19.0 2.5 23 27-49 1-23 (214)
8 d1e6vb2 d.58.31.2 (B:7-189) Be 10.2 26 0.0019 23.2 -0.1 30 21-50 107-138 (183)
9 d1x4ka2 g.39.1.3 (A:8-34) Four 10.2 55 0.004 15.6 1.2 10 25-35 9-18 (27)
10 d1e6yb2 d.58.31.2 (B:2002-2185 10.0 19 0.0014 24.0 -1.0 29 21-50 108-139 (184)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=31.46 E-value=21 Score=18.24 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 035269 47 HTLIFFGIYTILILAVG 63 (69)
Q Consensus 47 HalifF~l~~if~~ai~ 63 (69)
+|-+|.+++.||.+++=
T Consensus 14 rtsLy~GlLlifvl~vL 30 (37)
T d2axtl1 14 RTSLYLGLLLILVLALL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45688888888888763
No 2
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.26 E-value=6.3 Score=26.50 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.1
Q ss_pred eeEEecCCCc---eeeeeCccchHHHHHHHHHH
Q 035269 21 LLFQLPGNHR---HFEFGSFATNGKAVLVHTLI 50 (69)
Q Consensus 21 LLfQ~PG~~r---~veFgn~~Tsg~si~vHali 50 (69)
+|.|+|-+ | --||..--|+..+.++|++|
T Consensus 111 llvqvPs~-Ri~~aa~Y~v~~t~~~~A~~~aIi 142 (187)
T d1hbnb2 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (187)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HHhhhhhhhHHHHHHHHHHHHHHH
Confidence 78999954 5 56888888999999999987
No 3
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=17.94 E-value=23 Score=19.89 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=10.4
Q ss_pred eEEecCCCceeeeeCcc
Q 035269 22 LFQLPGNHRHFEFGSFA 38 (69)
Q Consensus 22 LfQ~PG~~r~veFgn~~ 38 (69)
+.++.+++ +||||.+
T Consensus 214 ~i~~~~~~--ie~~~~~ 228 (228)
T d1uf3a_ 214 LLDLRARK--LETGNVR 228 (228)
T ss_dssp EEETTTTE--EEEEECC
T ss_pred EEEccCCE--EEEEeeC
Confidence 55666654 9999864
No 4
>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2, P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.75 E-value=24 Score=20.76 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=19.8
Q ss_pred hccceeEEecCCCceeeeeCccch
Q 035269 17 LSPGLLFQLPGNHRHFEFGSFATN 40 (69)
Q Consensus 17 LsPGLLfQ~PG~~r~veFgn~~Ts 40 (69)
++.|=.|.+-|..|.|||-=++|.
T Consensus 40 v~~gD~f~v~g~~r~VEFKVv~~d 63 (94)
T d1e32a3 40 IRKGDIFLVRGGMRAVEFKVVETD 63 (94)
T ss_dssp EETTCEEEEEETTEEEEEEEEEES
T ss_pred ccCCCEEEEccCCeeEEEEEEeec
Confidence 467889999999999999766653
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.11 E-value=63 Score=15.57 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 035269 48 TLIFFGIYTILILAV 62 (69)
Q Consensus 48 alifF~l~~if~~ai 62 (69)
.+||-+++.+|..|+
T Consensus 7 v~ifac~i~lfffai 21 (30)
T d2axtt1 7 VFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777777775
No 6
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=13.84 E-value=20 Score=17.71 Aligned_cols=12 Identities=42% Similarity=0.647 Sum_probs=8.4
Q ss_pred HHHHHHhcccee
Q 035269 11 LLLFILLSPGLL 22 (69)
Q Consensus 11 vvLFvlLsPGLL 22 (69)
++|-+.|.||.|
T Consensus 10 valvial~pg~l 21 (31)
T d1jb0m_ 10 VALVIALLPAVL 21 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677888865
No 7
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.64 E-value=75 Score=18.96 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=18.4
Q ss_pred CCCceeeeeCccchHHHHHHHHH
Q 035269 27 GNHRHFEFGSFATNGKAVLVHTL 49 (69)
Q Consensus 27 G~~r~veFgn~~Tsg~si~vHal 49 (69)
||++.+-|=+..-||+|-.++.+
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L 23 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNIL 23 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEECCCCCcHHHHHHHH
Confidence 78888888888888888877754
No 8
>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=10.21 E-value=26 Score=23.23 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=23.8
Q ss_pred eeEEecCCCc--eeeeeCccchHHHHHHHHHH
Q 035269 21 LLFQLPGNHR--HFEFGSFATNGKAVLVHTLI 50 (69)
Q Consensus 21 LLfQ~PG~~r--~veFgn~~Tsg~si~vHali 50 (69)
+|.|+|-+.- --||.---|+..+.++|++|
T Consensus 107 llvqvPs~Ri~~aa~y~v~~~~~~~A~~~aIi 138 (183)
T d1e6vb2 107 LLVQLPSERVKVMADPYSGTLQAGMAVVHAII 138 (183)
T ss_dssp EEEECCHHHHTTCSSSSTHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 7899995421 36788888999999999986
No 9
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.20 E-value=55 Score=15.57 Aligned_cols=10 Identities=40% Similarity=1.066 Sum_probs=6.8
Q ss_pred ecCCCceeeee
Q 035269 25 LPGNHRHFEFG 35 (69)
Q Consensus 25 ~PG~~r~veFg 35 (69)
+||. |..||-
T Consensus 9 MPGs-rKme~k 18 (27)
T d1x4ka2 9 MPGT-RKMEYK 18 (27)
T ss_dssp CSSS-CEEEET
T ss_pred cCCc-eeeccc
Confidence 6887 567773
No 10
>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=10.02 E-value=19 Score=24.00 Aligned_cols=29 Identities=38% Similarity=0.503 Sum_probs=23.4
Q ss_pred eeEEecCCCce---eeeeCccchHHHHHHHHHH
Q 035269 21 LLFQLPGNHRH---FEFGSFATNGKAVLVHTLI 50 (69)
Q Consensus 21 LLfQ~PG~~r~---veFgn~~Tsg~si~vHali 50 (69)
+|.|+|-+ |. -||..--|+..+.++|++|
T Consensus 108 llvqvPs~-Ri~~aa~Y~~~~t~~~~A~~~aIi 139 (184)
T d1e6yb2 108 LLIQSPKS-RIIAGADFMSATTVGAAAVTQTIM 139 (184)
T ss_dssp EEEECCHH-HHHTSSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HHhhhcchhHHHHHHHHHHHHHHH
Confidence 78999954 42 5788888999999999987
Done!