BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035270
MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES
ELSDWSDES

High Scoring Gene Products

Symbol, full name Information P value
SEP2
stress enhanced protein 2 		protein from Arabidopsis thaliana 8.3e-19

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035270
        (69 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2052489 - symbol:SEP2 "stress enhanced protein...   226  8.3e-19   1


>TAIR|locus:2052489 [details] [associations]
            symbol:SEP2 "stress enhanced protein 2" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009765 "photosynthesis, light harvesting" evidence=ISS]
            [GO:0016168 "chlorophyll binding" evidence=ISS] EMBL:CP002685
            GO:GO:0009535 EMBL:AC007019 GO:GO:0016168 GO:GO:0009765
            EMBL:AF133717 EMBL:AY084392 IPI:IPI00548804 PIR:D84607
            RefSeq:NP_565524.1 UniGene:At.24155 UniGene:At.48502
            EnsemblPlants:AT2G21970.1 GeneID:816733 KEGG:ath:AT2G21970
            TAIR:At2g21970 HOGENOM:HOG000241068 InParanoid:Q9SJ02 OMA:RVGRIFT
            ProtClustDB:CLSN2688330 Genevestigator:Q9SJ02 Uniprot:Q9SJ02
        Length = 202

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 41/68 (60%), Positives = 57/68 (83%)

Query:     1 MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES 60
             +D++ + EA G  L A+  AA+FAW + +RNRVGR+FT+SCN+FIDSL+DQIVDGLFY++
Sbjct:   134 LDVEGLSEAIGAGLAAMGCAAMFAWLTISRNRVGRIFTVSCNSFIDSLVDQIVDGLFYDT 193

Query:    61 ELSDWSDE 68
             + SDWSD+
Sbjct:   194 KPSDWSDD 201


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        69   0.00091  102 3  11 22  0.41    28
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  538 (57 KB)
  Total size of DFA:  109 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.19u 0.10s 7.29t   Elapsed:  00:00:01
  Total cpu time:  7.19u 0.10s 7.29t   Elapsed:  00:00:01
  Start:  Fri May 10 06:58:35 2013   End:  Fri May 10 06:58:36 2013

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