BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035270
         (69 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P56819|BACE1_RAT Beta-secretase 1 OS=Rattus norvegicus GN=Bace1 PE=2 SV=1
          Length = 501

 Score = 30.0 bits (66), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 7   EEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYESELSD 64
           + + G  +GA++    +  F  AR R+G  F +S     D      V+G F  +++ D
Sbjct: 387 QSSTGTVMGAVIMEGFYVVFDRARKRIG--FAVSACHVHDEFRTAAVEGPFVTADMED 442


>sp|P56818|BACE1_MOUSE Beta-secretase 1 OS=Mus musculus GN=Bace1 PE=1 SV=2
          Length = 501

 Score = 30.0 bits (66), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 7   EEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYESELSD 64
           + + G  +GA++    +  F  AR R+G  F +S     D      V+G F  +++ D
Sbjct: 387 QSSTGTVMGAVIMEGFYVVFDRARKRIG--FAVSACHVHDEFRTAAVEGPFVTADMED 442


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.137    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,186,561
Number of Sequences: 539616
Number of extensions: 645780
Number of successful extensions: 1731
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1731
Number of HSP's gapped (non-prelim): 2
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)