Query 035270
Match_columns 69
No_of_seqs 15 out of 17
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 17:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9l_A Granulysin; saposin fol 87.0 0.44 1.5E-05 28.3 2.5 38 26-63 30-67 (74)
2 1nkl_A NK-lysin; saposin fold, 78.6 1.1 3.8E-05 26.0 1.9 32 30-62 35-66 (78)
3 3s64_A AC-SLP-1, saposin-like 69.4 5 0.00017 25.1 3.3 28 37-64 52-79 (87)
4 3bqp_A Proactivator polypeptid 64.8 4.8 0.00016 22.2 2.3 36 26-61 32-67 (80)
5 1of9_A Pore-forming peptide am 61.6 2.6 8.9E-05 24.4 0.8 31 32-62 37-67 (77)
6 2ifo_A Inovirus; helical virus 56.3 18 0.00061 20.6 3.8 25 5-29 21-45 (46)
7 2gtg_A Proactivator polypeptid 55.7 6.8 0.00023 22.1 1.9 32 31-62 39-70 (83)
8 2qyp_A Proactivator polypeptid 54.9 3.9 0.00013 23.8 0.8 37 26-62 35-71 (91)
9 3osj_A Phycobilisome LCM core- 47.4 9.4 0.00032 26.1 1.9 16 36-51 115-130 (147)
10 3pru_C Phycobilisome 32.1 kDa 46.1 9.1 0.00031 26.4 1.7 16 36-51 109-124 (154)
11 3nph_B Phycobilisome 32.1 kDa 40.7 9.8 0.00034 26.0 1.1 15 36-50 104-118 (148)
12 3rfi_A Asp; PSI, saposin, hydr 40.1 18 0.00062 22.1 2.2 27 36-62 6-32 (108)
13 3ohw_B Phycobilisome LCM core- 38.0 11 0.00039 25.7 1.1 16 36-51 116-131 (148)
14 2ky4_A Phycobilisome linker po 37.1 11 0.00037 25.8 0.9 15 36-50 107-121 (149)
15 4ddj_A Saposin-A, protein A; s 34.5 36 0.0012 19.0 2.7 33 27-59 34-67 (83)
16 2prv_A Uncharacterized protein 29.6 25 0.00086 21.8 1.6 22 43-67 132-153 (153)
17 2js9_A Saposin-like protein fa 28.4 18 0.00062 22.2 0.8 27 37-63 63-89 (99)
18 1jdp_H CNP, C-type natriuretic 25.2 9.3 0.00032 19.9 -0.8 14 31-44 12-25 (26)
19 1n69_A Saposin B; lipid bindin 23.7 84 0.0029 17.7 3.1 37 22-59 30-66 (81)
20 3ttz_A DNA gyrase subunit B; p 22.9 46 0.0016 22.3 2.1 27 29-55 16-46 (198)
21 2jp3_A FXYD domain-containing 22.8 75 0.0026 19.4 2.8 25 8-32 18-42 (67)
22 1vbk_A Hypothetical protein PH 20.3 34 0.0012 24.1 1.0 25 32-56 7-34 (307)
23 4emv_A DNA topoisomerase IV, B 20.0 56 0.0019 22.6 2.1 24 33-56 33-56 (226)
No 1
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=87.03 E-value=0.44 Score=28.28 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=31.1
Q ss_pred HHhhhcchhhhhhhhhhHHHHHHHHHHHhhhcccCCCC
Q 035270 26 FSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYESELS 63 (69)
Q Consensus 26 ~ssAR~rVg~~ft~~cn~fvDslID~iVDgLFye~e~~ 63 (69)
....=++.+..+.--|.+|||.-.++||+.|=.+..|+
T Consensus 30 L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~~L~~~~~P~ 67 (74)
T 1l9l_A 30 ATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGETAQ 67 (74)
T ss_dssp HHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 34455677877899999999999999999998776654
No 2
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=78.58 E-value=1.1 Score=25.97 Aligned_cols=32 Identities=9% Similarity=0.201 Sum_probs=25.9
Q ss_pred hcchhhhhhhhhhHHHHHHHHHHHhhhcccCCC
Q 035270 30 RNRVGRMFTLSCNTFIDSLIDQIVDGLFYESEL 62 (69)
Q Consensus 30 R~rVg~~ft~~cn~fvDslID~iVDgLFye~e~ 62 (69)
=+..+. +..-|++|||.-.+.||+-|-....|
T Consensus 35 C~~lp~-~~~~C~~~V~~y~~~iI~~l~~~~~P 66 (78)
T 1nkl_A 35 CDKLKI-LRGLCKKIMRSFLRRISWDILTGKKP 66 (78)
T ss_dssp HHHSCS-THHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HhhCch-hHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 345676 88889999999999999988766554
No 3
>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding protein; HET: CIT EPE; 2.30A {Ancylostoma caninum}
Probab=69.36 E-value=5 Score=25.06 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=24.4
Q ss_pred hhhhhhHHHHHHHHHHHhhhcccCCCCC
Q 035270 37 FTLSCNTFIDSLIDQIVDGLFYESELSD 64 (69)
Q Consensus 37 ft~~cn~fvDslID~iVDgLFye~e~~d 64 (69)
.+..|..++|+-+|.||+-|=+.+.|.|
T Consensus 52 a~k~C~~~v~~~~d~II~eLe~g~~P~~ 79 (87)
T 3s64_A 52 AEKECKALAKIEMGAIKTLLENGSAPEE 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCTTT
T ss_pred hHHHHHHHHHHhHHHHHHHHHcCCCHHH
Confidence 4688999999999999999988877765
No 4
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=64.76 E-value=4.8 Score=22.19 Aligned_cols=36 Identities=8% Similarity=0.212 Sum_probs=26.5
Q ss_pred HHhhhcchhhhhhhhhhHHHHHHHHHHHhhhcccCC
Q 035270 26 FSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYESE 61 (69)
Q Consensus 26 ~ssAR~rVg~~ft~~cn~fvDslID~iVDgLFye~e 61 (69)
+...=++++..+..-|+.|||.-.+.|++-|-....
T Consensus 32 l~~~C~~lp~~~~~~C~~~v~~y~~~ii~~l~~~~~ 67 (80)
T 3bqp_A 32 LEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMD 67 (80)
T ss_dssp HHHHGGGSCGGGHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhCCCccchhhHHHHHHHHHHHHHHHHHCCC
Confidence 334444566567888999999999999998865443
No 5
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=61.64 E-value=2.6 Score=24.36 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=23.7
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcccCCC
Q 035270 32 RVGRMFTLSCNTFIDSLIDQIVDGLFYESEL 62 (69)
Q Consensus 32 rVg~~ft~~cn~fvDslID~iVDgLFye~e~ 62 (69)
.....+..=|++|||.-++.||+-|-....|
T Consensus 37 ~lp~~~~~~C~~~V~~y~~~iI~~l~~~~~P 67 (77)
T 1of9_A 37 KASGFIATLCTKVLDFGIDKLIQLIEDKVDA 67 (77)
T ss_dssp TCSSTTHHHHHHHHHHCHHHHHHHHHHTCCH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3434467779999999999999988765544
No 6
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=56.34 E-value=18 Score=20.59 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=18.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhh
Q 035270 5 WIEEAGGVCLGAIVFAAIFAWFSSA 29 (69)
Q Consensus 5 ~i~Ea~gvc~~av~~AA~FAw~ssA 29 (69)
.|.+.++..++.++....|.|..|+
T Consensus 21 ~i~~IG~aVLgV~v~i~v~k~IRra 45 (46)
T 2ifo_A 21 PIAAIGGAVLTVMVGIKVYKWVRRA 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566677778888888888887764
No 7
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=55.72 E-value=6.8 Score=22.07 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=24.5
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhhcccCCC
Q 035270 31 NRVGRMFTLSCNTFIDSLIDQIVDGLFYESEL 62 (69)
Q Consensus 31 ~rVg~~ft~~cn~fvDslID~iVDgLFye~e~ 62 (69)
+.++..+..-|..|||.-.+.|++-|-....|
T Consensus 39 ~~lp~~~~~~C~~~V~~y~~~ii~~l~~~~~P 70 (83)
T 2gtg_A 39 SKLPKSLSEECQEVVDTYGSSILSILLEEVSP 70 (83)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHCCCcchhHHHHHHHHHHHHHHHHHHHCCCH
Confidence 44555578889999999999999988755443
No 8
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=54.92 E-value=3.9 Score=23.76 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=26.2
Q ss_pred HHhhhcchhhhhhhhhhHHHHHHHHHHHhhhcccCCC
Q 035270 26 FSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYESEL 62 (69)
Q Consensus 26 ~ssAR~rVg~~ft~~cn~fvDslID~iVDgLFye~e~ 62 (69)
+...=++.+..+..-|++|||.-.+.||+-|-....|
T Consensus 35 l~~~C~~lp~~~~~~C~~~V~~y~~~ii~~l~~~~~P 71 (91)
T 2qyp_A 35 FDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSP 71 (91)
T ss_dssp HHHHHHTSCSSTTTTHHHHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHCCCCcccchHHHHHHHHHHHHHHHHHcCCH
Confidence 3333344555577889999999999999987654443
No 9
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=47.42 E-value=9.4 Score=26.12 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=13.3
Q ss_pred hhhhhhhHHHHHHHHH
Q 035270 36 MFTLSCNTFIDSLIDQ 51 (69)
Q Consensus 36 ~ft~~cn~fvDslID~ 51 (69)
+=+.|...|||++||-
T Consensus 115 ~a~~G~~a~IDslidS 130 (147)
T 3osj_A 115 VSSGGLPALVDALVDS 130 (147)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHccCcHhHHHHHhCc
Confidence 4578999999999983
No 10
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=46.10 E-value=9.1 Score=26.40 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=13.3
Q ss_pred hhhhhhhHHHHHHHHH
Q 035270 36 MFTLSCNTFIDSLIDQ 51 (69)
Q Consensus 36 ~ft~~cn~fvDslID~ 51 (69)
+=+.|...|||++||-
T Consensus 109 ~a~~G~~a~IDslidS 124 (154)
T 3pru_C 109 YENQGFDADIDSYIDS 124 (154)
T ss_dssp HHHHCHHHHHHHHHHS
T ss_pred HHccCchhhhhHhhCc
Confidence 4578999999999983
No 11
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=40.66 E-value=9.8 Score=26.04 Aligned_cols=15 Identities=27% Similarity=0.222 Sum_probs=12.7
Q ss_pred hhhhhhhHHHHHHHH
Q 035270 36 MFTLSCNTFIDSLID 50 (69)
Q Consensus 36 ~ft~~cn~fvDslID 50 (69)
+=+.|...|||++||
T Consensus 104 ~a~~G~~a~IDslid 118 (148)
T 3nph_B 104 YHQGGYEAEINSYID 118 (148)
T ss_dssp HHHHCHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHhC
Confidence 457899999999987
No 12
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Probab=40.11 E-value=18 Score=22.05 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=22.4
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcccCCC
Q 035270 36 MFTLSCNTFIDSLIDQIVDGLFYESEL 62 (69)
Q Consensus 36 ~ft~~cn~fvDslID~iVDgLFye~e~ 62 (69)
+|+.-|.+|||.-.+.|++-|-.+..|
T Consensus 6 ~~~~~C~~~V~~Y~~~ii~~l~~~~~P 32 (108)
T 3rfi_A 6 IVSMECKTIVSQYGEMIWDLLVSGVRP 32 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 577889999999999999988765543
No 13
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.70A {Synechocystis SP}
Probab=38.04 E-value=11 Score=25.67 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=13.0
Q ss_pred hhhhhhhHHHHHHHHH
Q 035270 36 MFTLSCNTFIDSLIDQ 51 (69)
Q Consensus 36 ~ft~~cn~fvDslID~ 51 (69)
+=+.|...|||++||-
T Consensus 116 la~~G~~a~IdslidS 131 (148)
T 3ohw_B 116 LASQGLKAFIGAMVNG 131 (148)
T ss_dssp HHHHCHHHHHHHHHTS
T ss_pred HHccCcHHHHHHHhCc
Confidence 4578999999999873
No 14
>2ky4_A Phycobilisome linker polypeptide; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium; NMR {Nostoc SP}
Probab=37.15 E-value=11 Score=25.83 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=12.6
Q ss_pred hhhhhhhHHHHHHHH
Q 035270 36 MFTLSCNTFIDSLID 50 (69)
Q Consensus 36 ~ft~~cn~fvDslID 50 (69)
+=+.|...|||++||
T Consensus 107 la~~G~~a~IDslid 121 (149)
T 2ky4_A 107 LATQGIRAFINALVN 121 (149)
T ss_dssp HHHTCHHHHHHHHHS
T ss_pred HHccCcHHHHHHHhC
Confidence 457899999999987
No 15
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=34.52 E-value=36 Score=19.04 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=24.3
Q ss_pred Hhhhcchhhh-hhhhhhHHHHHHHHHHHhhhccc
Q 035270 27 SSARNRVGRM-FTLSCNTFIDSLIDQIVDGLFYE 59 (69)
Q Consensus 27 ssAR~rVg~~-ft~~cn~fvDslID~iVDgLFye 59 (69)
...=++...- ++.-|..+||.-.+.|++-|-.+
T Consensus 34 ~~~C~~lp~~~~~~~C~~~v~~y~~~ii~~l~~~ 67 (83)
T 4ddj_A 34 EKTCDWLPKPNMSASCKEIVDSYLPVILDIIKGE 67 (83)
T ss_dssp HHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHc
Confidence 3333455554 68899999999999999977543
No 16
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=29.63 E-value=25 Score=21.83 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCc
Q 035270 43 TFIDSLIDQIVDGLFYESELSDWSD 67 (69)
Q Consensus 43 ~fvDslID~iVDgLFye~e~~dwsd 67 (69)
.|++.+|.+ .+---.|+.||.|
T Consensus 132 efL~~~i~~---~~~~~~~~~~~~~ 153 (153)
T 2prv_A 132 EFFYNKIQE---AKDDWDEDEDWDD 153 (153)
T ss_dssp HHHHHHHHH---HHHHHSCCCSSCC
T ss_pred HHHHHHHHH---HHhccccccccCC
Confidence 444444444 4444567788875
No 17
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A
Probab=28.43 E-value=18 Score=22.24 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=21.5
Q ss_pred hhhhhhHHHHHHHHHHHhhhcccCCCC
Q 035270 37 FTLSCNTFIDSLIDQIVDGLFYESELS 63 (69)
Q Consensus 37 ft~~cn~fvDslID~iVDgLFye~e~~ 63 (69)
+..-|.+|||.-++.||+-|-....|.
T Consensus 63 ~~~~C~~~V~~y~~~II~~L~~~~~P~ 89 (99)
T 2js9_A 63 GTRECDHYVNSKVDPIIHELEGGTAPK 89 (99)
T ss_dssp HHHHHHTTTTTTHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 567799999999999999876665543
No 18
>1jdp_H CNP, C-type natriuretic peptide; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens}
Probab=25.25 E-value=9.3 Score=19.89 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=11.7
Q ss_pred cchhhhhhhhhhHH
Q 035270 31 NRVGRMFTLSCNTF 44 (69)
Q Consensus 31 ~rVg~~ft~~cn~f 44 (69)
.|||.+=.+|||.|
T Consensus 12 DRIgs~SglGC~~~ 25 (26)
T 1jdp_H 12 DRIGSMSGLGCXXX 25 (26)
T ss_pred cccccccCCCcccC
Confidence 47888888999976
No 19
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=23.69 E-value=84 Score=17.66 Aligned_cols=37 Identities=11% Similarity=0.335 Sum_probs=26.8
Q ss_pred HHHHHHhhhcchhhhhhhhhhHHHHHHHHHHHhhhccc
Q 035270 22 IFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYE 59 (69)
Q Consensus 22 ~FAw~ssAR~rVg~~ft~~cn~fvDslID~iVDgLFye 59 (69)
+-..+...=++.+..++.-|+++||.-.+.|++ ++.+
T Consensus 30 I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~ii~-~l~~ 66 (81)
T 1n69_A 30 LVEHVKEECDRLGPGMADICKNYISQYSEIAIQ-MMMH 66 (81)
T ss_dssp HHHHHHHHGGGGCTTHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 444455556677777899999999999996665 4443
No 20
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=22.93 E-value=46 Score=22.33 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=20.6
Q ss_pred hhcchh----hhhhhhhhHHHHHHHHHHHhh
Q 035270 29 ARNRVG----RMFTLSCNTFIDSLIDQIVDG 55 (69)
Q Consensus 29 AR~rVg----~~ft~~cn~fvDslID~iVDg 55 (69)
-|.|-| .+=+.|..+.|..+|||-+|.
T Consensus 16 vr~RPgmYiGs~~~~gl~~~v~Elv~NsiD~ 46 (198)
T 3ttz_A 16 VRKRPGMYIGSTSERGLHHLVWEIVDNSIDE 46 (198)
T ss_dssp HHHSHHHHHSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcEECCCCCcchHHHHHHHHHHHHhH
Confidence 455543 334679999999999999994
No 21
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.81 E-value=75 Score=19.36 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=19.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhhcc
Q 035270 8 EAGGVCLGAIVFAAIFAWFSSARNR 32 (69)
Q Consensus 8 Ea~gvc~~av~~AA~FAw~ssAR~r 32 (69)
.-+|+.+|+|+++.+..-.-|-|=|
T Consensus 18 RigGLifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 18 QLGGLIFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred eecchhhHHHHHHHHHHHHHcCccc
Confidence 3589999999999998877766533
No 22
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=20.33 E-value=34 Score=24.11 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.7
Q ss_pred chhhhhhhhhh---HHHHHHHHHHHhhh
Q 035270 32 RVGRMFTLSCN---TFIDSLIDQIVDGL 56 (69)
Q Consensus 32 rVg~~ft~~cn---~fvDslID~iVDgL 56 (69)
|-|.++++|=| .|++.|++||-..|
T Consensus 7 ~~gEi~~K~~~vr~~Fe~~L~~nI~~~L 34 (307)
T 1vbk_A 7 RYGEIGTKSRQTRSWFEKILMNNIREAL 34 (307)
T ss_dssp EECCTTCCCSSCHHHHHHHHHHHHHHHH
T ss_pred EeccEEecCCCcHHHHHHHHHHHHHHHh
Confidence 56889999966 79999999998877
No 23
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=20.03 E-value=56 Score=22.58 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=19.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhh
Q 035270 33 VGRMFTLSCNTFIDSLIDQIVDGL 56 (69)
Q Consensus 33 Vg~~ft~~cn~fvDslID~iVDgL 56 (69)
+|.+=+.|.+..|+.+|||.+|.-
T Consensus 33 iGs~~~~gl~~~v~Eiv~NaiD~~ 56 (226)
T 4emv_A 33 IGSTDGAGLHHLVWEIVDNAVDEA 56 (226)
T ss_dssp HSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCcccHHHHHHHHHHHHHHHH
Confidence 344446789999999999999973
Done!