Query 035270
Match_columns 69
No_of_seqs 15 out of 17
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 17:24:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035270.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035270hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l9la_ a.64.1.1 (A:) Granulys 74.5 1.4 0.0001 23.8 3.0 37 26-62 30-66 (74)
2 d1qdma1 a.64.1.2 (A:1S-104S) ( 68.3 1.1 7.9E-05 25.2 1.5 23 37-59 2-24 (104)
3 d1n69a_ a.64.1.3 (A:) Saposin 62.1 3.9 0.00028 22.0 3.1 32 25-56 31-62 (78)
4 d2gtga1 a.64.1.1 (A:2-79) Sapo 47.9 5 0.00037 20.8 1.9 30 32-61 37-66 (78)
5 d1nkla_ a.64.1.1 (A:) NK-lysin 47.3 4.6 0.00034 21.2 1.7 31 31-62 36-66 (78)
6 d1kija2 d.122.1.2 (A:9-220) DN 46.9 5 0.00036 25.5 2.1 23 33-55 19-41 (212)
7 d1nkta2 a.172.1.1 (A:616-835) 46.6 8.9 0.00064 23.7 3.2 33 34-66 50-82 (220)
8 d2fq4a2 a.121.1.1 (A:78-192) T 37.5 7.7 0.00056 21.4 1.7 15 42-56 98-112 (115)
9 d1ei1a2 d.122.1.2 (A:2-220) DN 30.9 16 0.0012 23.4 2.6 19 38-56 32-50 (219)
10 d1p71a_ a.55.1.1 (A:) HU prote 27.0 21 0.0015 19.7 2.4 19 40-58 20-38 (94)
11 d2hsga1 a.35.1.5 (A:2-58) Gluc 24.9 16 0.0011 19.4 1.4 16 2-17 3-18 (57)
12 d1b8za_ a.55.1.1 (A:) HU prote 24.0 26 0.0019 19.1 2.4 20 39-58 19-38 (90)
13 d1of9a_ a.64.1.4 (A:) Ameobapo 23.5 22 0.0016 18.6 1.9 29 32-60 37-65 (77)
14 d3brja1 a.285.1.1 (A:6-172) Ma 21.6 42 0.0031 21.6 3.4 27 35-61 16-42 (167)
15 d1vbka2 d.308.1.1 (A:1-175) Hy 21.2 15 0.0011 22.3 1.0 25 32-56 7-34 (175)
16 d1mula_ a.55.1.1 (A:) HU prote 21.0 32 0.0023 18.8 2.4 20 39-58 19-38 (90)
17 d1qpza1 a.35.1.5 (A:2-58) Puri 20.5 23 0.0017 18.7 1.6 16 3-18 3-18 (57)
18 d1efaa1 a.35.1.5 (A:2-60) Lac 20.2 19 0.0014 19.3 1.1 16 3-18 5-20 (59)
No 1
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.47 E-value=1.4 Score=23.83 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHhhhcchhhhhhhhhhHHHHHHHHHHHhhhcccCCC
Q 035270 26 FSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYESEL 62 (69)
Q Consensus 26 ~ssAR~rVg~~ft~~cn~fvDslID~iVDgLFye~e~ 62 (69)
+...=+.++..+..-|++|||.-.++||+-|.....|
T Consensus 30 l~~~C~~lp~~~~~~C~~lv~~Y~~~ii~~l~~~~~P 66 (74)
T d1l9la_ 30 ATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGETA 66 (74)
T ss_dssp HHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHhHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 3444456676788899999999999999999776544
No 2
>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=68.32 E-value=1.1 Score=25.15 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=19.4
Q ss_pred hhhhhhHHHHHHHHHHHhhhccc
Q 035270 37 FTLSCNTFIDSLIDQIVDGLFYE 59 (69)
Q Consensus 37 ft~~cn~fvDslID~iVDgLFye 59 (69)
++.-|..|||.-.|+||+-|=.+
T Consensus 2 ls~eC~~~V~~Y~~~ii~~L~~~ 24 (104)
T d1qdma1 2 VSQECKTIVSQYGQQILDLLLAE 24 (104)
T ss_dssp CCHHHHHHHHHTHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999999987443
No 3
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.12 E-value=3.9 Score=22.01 Aligned_cols=32 Identities=13% Similarity=0.302 Sum_probs=25.7
Q ss_pred HHHhhhcchhhhhhhhhhHHHHHHHHHHHhhh
Q 035270 25 WFSSARNRVGRMFTLSCNTFIDSLIDQIVDGL 56 (69)
Q Consensus 25 w~ssAR~rVg~~ft~~cn~fvDslID~iVDgL 56 (69)
.....=+.++..+..-|.+|||.-+++|++-|
T Consensus 31 ~l~~~C~~lp~~~~~~C~~~V~~y~~~ii~~l 62 (78)
T d1n69a_ 31 HVKEECDRLGPGMADICKNYISQYSEIAIQMM 62 (78)
T ss_dssp HHHHHGGGGCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHhHHHHHHHHHHHHHHH
Confidence 34444566777788999999999999999966
No 4
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.93 E-value=5 Score=20.84 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=23.2
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcccCC
Q 035270 32 RVGRMFTLSCNTFIDSLIDQIVDGLFYESE 61 (69)
Q Consensus 32 rVg~~ft~~cn~fvDslID~iVDgLFye~e 61 (69)
-++..+..-|+.||+.-.+.|++-|-+.-.
T Consensus 37 ~lp~~~~~~C~~~v~~y~~~ii~~l~~~~~ 66 (78)
T d2gtga1 37 KLPKSLSEECQEVVDTYGSSILSILLEEVS 66 (78)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hCCcchhhhhHHHHHHHHHHHHHHHHhCCC
Confidence 345567888999999999999998765433
No 5
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}
Probab=47.31 E-value=4.6 Score=21.22 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=23.6
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhhcccCCC
Q 035270 31 NRVGRMFTLSCNTFIDSLIDQIVDGLFYESEL 62 (69)
Q Consensus 31 ~rVg~~ft~~cn~fvDslID~iVDgLFye~e~ 62 (69)
+.++. +..-|++||+.-.+.|++-|-....|
T Consensus 36 ~~lp~-~~~~C~~~v~~y~~~ii~~l~~~~~p 66 (78)
T d1nkla_ 36 DKLKI-LRGLCKKIMRSFLRRISWDILTGKKP 66 (78)
T ss_dssp HHSCS-THHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred hcCCc-HHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 45553 66679999999999999988665443
No 6
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=46.85 E-value=5 Score=25.50 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=19.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhh
Q 035270 33 VGRMFTLSCNTFIDSLIDQIVDG 55 (69)
Q Consensus 33 Vg~~ft~~cn~fvDslID~iVDg 55 (69)
||..-+.|.++.+|.+|||-+|-
T Consensus 19 iGst~~~Gl~~l~~Eil~Na~De 41 (212)
T d1kija2 19 IGGTGVEGYHHLFKEILDNAVDE 41 (212)
T ss_dssp HSCSSHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCcchhhhhhhhhhhhhhh
Confidence 45556889999999999999985
No 7
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=46.58 E-value=8.9 Score=23.73 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=24.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhcccCCCCCCC
Q 035270 34 GRMFTLSCNTFIDSLIDQIVDGLFYESELSDWS 66 (69)
Q Consensus 34 g~~ft~~cn~fvDslID~iVDgLFye~e~~dws 66 (69)
|.-...--..+++..||.+|+..+....+.+|.
T Consensus 50 ~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~~ 82 (220)
T d1nkta2 50 GENLKDQALDMVRDVITAYVDGATGEGYAEDWD 82 (220)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTSSSCSSCSC
T ss_pred ccchHHHHHHHHHHHHHHhhhhhcccchhhhhh
Confidence 333444456788899999999988888888885
No 8
>d2fq4a2 a.121.1.1 (A:78-192) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=37.49 E-value=7.7 Score=21.41 Aligned_cols=15 Identities=13% Similarity=0.627 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHhhh
Q 035270 42 NTFIDSLIDQIVDGL 56 (69)
Q Consensus 42 n~fvDslID~iVDgL 56 (69)
-++++.++|+++.|+
T Consensus 98 ~~~~~~lvd~vl~g~ 112 (115)
T d2fq4a2 98 DSYVHDLVINAFEGI 112 (115)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhc
Confidence 468999999998886
No 9
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}
Probab=30.87 E-value=16 Score=23.37 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=16.3
Q ss_pred hhhhhHHHHHHHHHHHhhh
Q 035270 38 TLSCNTFIDSLIDQIVDGL 56 (69)
Q Consensus 38 t~~cn~fvDslID~iVDgL 56 (69)
+.|+...+|.+|||-+|-.
T Consensus 32 ~~gl~~l~~Eil~Na~De~ 50 (219)
T d1ei1a2 32 GTGLHHMVFEVVDNAIDEA 50 (219)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhHhHhhhhhhhh
Confidence 4699999999999999853
No 10
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Probab=27.03 E-value=21 Score=19.70 Aligned_cols=19 Identities=5% Similarity=0.338 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHhhhcc
Q 035270 40 SCNTFIDSLIDQIVDGLFY 58 (69)
Q Consensus 40 ~cn~fvDslID~iVDgLFy 58 (69)
-+..+||+++|.|.+.|=.
T Consensus 20 ~~~~~v~~~~~~i~~~L~~ 38 (94)
T d1p71a_ 20 QADAVLTAALETIIEAVSS 38 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4677899999999888743
No 11
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=24.88 E-value=16 Score=19.43 Aligned_cols=16 Identities=6% Similarity=0.221 Sum_probs=13.5
Q ss_pred cHHHHHHHhhhHHHHH
Q 035270 2 DMQWIEEAGGVCLGAI 17 (69)
Q Consensus 2 D~~~i~Ea~gvc~~av 17 (69)
-|++|++.+||..+.|
T Consensus 3 Ti~dvA~~agvS~~TV 18 (57)
T d2hsga1 3 TIYDVAREASVSMATV 18 (57)
T ss_dssp CHHHHHHHTTSCHHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 4789999999998765
No 12
>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId: 2336]}
Probab=23.98 E-value=26 Score=19.13 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=15.6
Q ss_pred hhhhHHHHHHHHHHHhhhcc
Q 035270 39 LSCNTFIDSLIDQIVDGLFY 58 (69)
Q Consensus 39 ~~cn~fvDslID~iVDgLFy 58 (69)
.-+..++|.++|.|.+.|=.
T Consensus 19 ~~~~~~~~~~~~~i~~~L~~ 38 (90)
T d1b8za_ 19 KDVKLILDTILETITEALAK 38 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35678899999999888744
No 13
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}
Probab=23.49 E-value=22 Score=18.55 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=21.5
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhhcccC
Q 035270 32 RVGRMFTLSCNTFIDSLIDQIVDGLFYES 60 (69)
Q Consensus 32 rVg~~ft~~cn~fvDslID~iVDgLFye~ 60 (69)
.....+..-|.+|||.-.+.|++-|=...
T Consensus 37 ~lp~~~~~~C~~~v~~y~~~ii~~l~~~~ 65 (77)
T d1of9a_ 37 KASGFIATLCTKVLDFGIDKLIQLIEDKV 65 (77)
T ss_dssp TCSSTTHHHHHHHHHHCHHHHHHHHHHTC
T ss_pred HCChHHHHHhHHHHHHHHHHHHHHHHHcC
Confidence 34456677899999999999888764433
No 14
>d3brja1 a.285.1.1 (A:6-172) Mannitol operon repressor MtlR {Vibrio parahaemolyticus [TaxId: 670]}
Probab=21.64 E-value=42 Score=21.60 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=22.6
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcccCC
Q 035270 35 RMFTLSCNTFIDSLIDQIVDGLFYESE 61 (69)
Q Consensus 35 ~~ft~~cn~fvDslID~iVDgLFye~e 61 (69)
|-|=+-|++++|..||.++--+|-.++
T Consensus 16 rgf~~~a~~il~~~l~~Ll~~vF~kdd 42 (167)
T d3brja1 16 RGFFIATVDVFNESIDGLIQRIFRKDN 42 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 556678999999999999999997654
No 15
>d1vbka2 d.308.1.1 (A:1-175) Hypothetical protein PH1313, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.20 E-value=15 Score=22.31 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.0
Q ss_pred chhhhhhhhhh---HHHHHHHHHHHhhh
Q 035270 32 RVGRMFTLSCN---TFIDSLIDQIVDGL 56 (69)
Q Consensus 32 rVg~~ft~~cn---~fvDslID~iVDgL 56 (69)
|-|.+..+|=| .|.+.|+.||-..|
T Consensus 7 rygEi~lKgkn~R~~Fe~~L~~Ni~~~L 34 (175)
T d1vbka2 7 RYGEIGTKSRQTRSWFEKILMNNIREAL 34 (175)
T ss_dssp EECCTTCCCSSCHHHHHHHHHHHHHHHH
T ss_pred EeeeEeecCCChHHHHHHHHHHHHHHHH
Confidence 56888999988 79999999998877
No 16
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Probab=21.01 E-value=32 Score=18.83 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHHHhhhcc
Q 035270 39 LSCNTFIDSLIDQIVDGLFY 58 (69)
Q Consensus 39 ~~cn~fvDslID~iVDgLFy 58 (69)
.-+..+||.++|.|.+.|=.
T Consensus 19 ~~~~~~v~~~~~~i~~~L~~ 38 (90)
T d1mula_ 19 TQAKAALESTLAAITESLKE 38 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44678999999999998833
No 17
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.48 E-value=23 Score=18.72 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=13.2
Q ss_pred HHHHHHHhhhHHHHHH
Q 035270 3 MQWIEEAGGVCLGAIV 18 (69)
Q Consensus 3 ~~~i~Ea~gvc~~av~ 18 (69)
+++|++.+||..+.|-
T Consensus 3 i~dvA~~agVS~sTVS 18 (57)
T d1qpza1 3 IKDVAKRANVSTTTVS 18 (57)
T ss_dssp HHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 6899999999887653
No 18
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.15 E-value=19 Score=19.33 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.3
Q ss_pred HHHHHHHhhhHHHHHH
Q 035270 3 MQWIEEAGGVCLGAIV 18 (69)
Q Consensus 3 ~~~i~Ea~gvc~~av~ 18 (69)
+++|++.+||..+.|-
T Consensus 5 i~diA~~agvS~sTVS 20 (59)
T d1efaa1 5 LYDVAEYAGVSYQTVS 20 (59)
T ss_dssp HHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHCCCHHHHH
Confidence 7899999999887653
Done!