BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035273
(69 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 12 TQALKHVADADGVDFVGLEGSEKDKVVVIGEGVDAVELAAGLRKKVGHTDLI 63
T L+++ D D +D ++ ++ DKV+V+G G ++E+ L ++ H LI
Sbjct: 126 TFTLRNLEDTDAIDQF-IKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 12 TQALKHVADADGVDFVGLEGSEKDKVVVIGEGVDAVELAAGLRKKVGHTDLI 63
T L+++ D D +D ++ ++ DKV+V+G G ++E+ L ++ H LI
Sbjct: 126 TFTLRNLEDTDAIDQF-IKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 12 TQALKHVADADGVDFVGLEGSEKDKVVVIGEGVDAVELAAGLRKKVGHTDLI 63
T L+++ D D +D ++ ++ DKV+V+G G ++E+ L ++ H LI
Sbjct: 127 TFTLRNLEDTDAIDQF-IKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 12 TQALKHVADADGVDFVGLEGSEKDKVVVIGEGVDAVELAAGLRKKVGHTDLI 63
T L+++ D D +D ++ ++ DKV+V+G G ++E+ L ++ H LI
Sbjct: 126 TFTLRNLEDTDAIDQF-IKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 12 TQALKHVADADGVDFVGLEGSEKDKVVVIGEGVDAVELAAGLRKKVGHTDLI 63
T L+++ D D +D ++ ++ DKV+V+G G ++E+ L ++ H LI
Sbjct: 126 TFTLRNLEDTDAIDQF-IKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 12 TQALKHVADADGVDFVGLEGSEKDKVVVIGEGVDAVELAAGLRKKVGHTDLI 63
T L+++ D D +D ++ ++ DKV+V+G G ++E+ L ++ H LI
Sbjct: 126 TFTLRNLEDTDAIDQF-IKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 12 TQALKHVADADGVDFVGLEGSEKDKVVVIGEGVDAVELAAGLRKKVGHTDLI 63
T L+++ D D +D ++ ++ DKV+V+G G ++E+ L ++ H LI
Sbjct: 126 TFTLRNLEDTDAIDQF-IKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 35 DKVVVIGEGVDAVELAAGLR 54
D VV++G G+ VE+A GLR
Sbjct: 5 DNVVIVGTGLAGVEVAFGLR 24
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin
Reductase- Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin
Reductase- Putidaredoxin Complex
Length = 436
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 35 DKVVVIGEGVDAVELAAGLR 54
D VV++G G+ VE+A GLR
Sbjct: 4 DNVVIVGTGLAGVEVAFGLR 23
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia
Coli Malate Dehydrogenase, Citrate And Nad At 1.9
Angstroms Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 15 LKHVADADGVDFVGLEGSEKDKVVVIGEGVDAVELAAGLRKKVG--HTDLISV 65
L H+ A V G G + + EG D V ++AG+R+K G +DL +V
Sbjct: 46 LSHIPTA--VKIKGFSGEDATPAL---EGADVVLISAGVRRKPGMDRSDLFNV 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,839,023
Number of Sequences: 62578
Number of extensions: 58826
Number of successful extensions: 212
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 19
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)