Query 035274
Match_columns 69
No_of_seqs 15 out of 17
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 10:35:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05886 yajC preprotein trans 86.7 0.61 1.3E-05 31.3 2.3 29 27-55 5-33 (109)
2 PF15141 DUF4574: Domain of un 83.1 1.1 2.3E-05 29.6 2.1 34 20-53 1-36 (84)
3 TIGR00739 yajC preprotein tran 82.1 2.1 4.5E-05 26.9 3.1 29 28-56 5-33 (84)
4 PF05057 DUF676: Putative seri 81.8 0.3 6.4E-06 33.5 -0.9 12 14-25 81-92 (217)
5 COG1862 YajC Preprotein transl 79.5 2.4 5.2E-05 27.9 2.9 33 25-57 8-40 (97)
6 PRK05585 yajC preprotein trans 78.9 2.3 5E-05 27.9 2.6 31 27-57 19-49 (106)
7 PF02699 YajC: Preprotein tran 75.6 0.9 1.9E-05 28.2 0.0 30 27-56 3-32 (82)
8 PRK06531 yajC preprotein trans 64.2 12 0.00026 25.2 3.5 28 28-56 5-32 (113)
9 PF04612 T2SM: Type II secreti 62.3 2.5 5.5E-05 27.1 0.0 30 29-58 21-50 (160)
10 smart00318 SNc Staphylococcal 55.8 19 0.0004 22.3 3.1 24 25-48 90-113 (138)
11 COG4803 Predicted membrane pro 49.1 14 0.00031 27.2 2.1 23 44-66 144-166 (170)
12 PF14283 DUF4366: Domain of un 48.5 10 0.00022 27.8 1.2 19 34-52 172-191 (218)
13 PF07819 PGAP1: PGAP1-like pro 46.9 4.3 9.4E-05 28.4 -0.9 12 15-26 89-100 (225)
14 PF05728 UPF0227: Uncharacteri 46.8 3.8 8.3E-05 28.4 -1.1 11 14-24 62-72 (187)
15 PRK06518 hypothetical protein; 46.4 20 0.00043 25.2 2.4 35 25-59 110-149 (177)
16 PTZ00046 rifin; Provisional 46.0 7.4 0.00016 30.9 0.2 41 17-59 141-181 (358)
17 COG3389 Uncharacterized protei 44.6 13 0.00028 29.2 1.3 24 25-48 89-112 (277)
18 PF09819 ABC_cobalt: ABC-type 44.2 9.4 0.0002 25.8 0.5 25 29-53 44-68 (129)
19 PRK07718 fliL flagellar basal 43.5 8.4 0.00018 25.6 0.1 23 30-52 14-36 (142)
20 PLN02965 Probable pheophorbida 42.4 6.2 0.00014 26.1 -0.6 11 14-24 75-85 (255)
21 PF01988 VIT1: VIT family; In 40.3 21 0.00046 24.7 1.8 41 26-66 38-78 (213)
22 PRK11273 glpT sn-glycerol-3-ph 40.3 19 0.00041 26.0 1.6 29 29-57 420-448 (452)
23 PF14960 ATP_synth_reg: ATP sy 39.7 21 0.00044 21.5 1.4 25 23-47 22-48 (49)
24 PF11760 CbiG_N: Cobalamin syn 39.3 19 0.00041 23.1 1.3 27 13-39 48-74 (84)
25 PF13132 DUF3950: Domain of un 38.5 17 0.00036 20.3 0.8 10 25-34 13-22 (30)
26 PRK08775 homoserine O-acetyltr 37.2 6.5 0.00014 27.8 -1.2 10 14-23 141-150 (343)
27 PRK11126 2-succinyl-6-hydroxy- 36.5 6.3 0.00014 25.1 -1.2 10 14-23 69-78 (242)
28 PF13706 PepSY_TM_3: PepSY-ass 36.2 20 0.00043 19.3 0.9 18 29-49 19-36 (37)
29 cd00175 SNc Staphylococcal nuc 36.0 59 0.0013 19.8 3.1 22 26-47 83-104 (129)
30 PF14880 COX14: Cytochrome oxi 35.9 19 0.0004 21.2 0.8 26 32-57 31-56 (59)
31 PLN02211 methyl indole-3-aceta 35.6 8.2 0.00018 26.7 -0.9 12 14-25 90-101 (273)
32 PHA00431 internal virion prote 35.0 31 0.00068 30.3 2.3 67 1-67 1-101 (746)
33 PF13906 AA_permease_C: C-term 32.5 30 0.00066 20.1 1.3 15 29-43 32-46 (51)
34 PRK07581 hypothetical protein; 29.4 9.9 0.00021 26.5 -1.3 12 14-25 127-138 (339)
35 TIGR02240 PHA_depoly_arom poly 28.4 11 0.00023 25.2 -1.2 11 14-24 94-104 (276)
36 KOG1454 Predicted hydrolase/ac 27.3 12 0.00027 27.6 -1.1 17 14-30 131-147 (326)
37 COG3167 PilO Tfp pilus assembl 27.2 27 0.00058 26.5 0.6 20 36-55 36-55 (211)
38 PRK10580 proY putative proline 26.7 16 0.00034 27.2 -0.7 26 29-54 432-457 (457)
39 PRK11387 S-methylmethionine tr 26.6 30 0.00064 25.9 0.7 24 32-57 444-467 (471)
40 PF11654 DUF2665: Protein of u 26.3 17 0.00036 21.7 -0.5 13 33-45 13-25 (47)
41 PF09796 QCR10: Ubiquinol-cyto 25.7 31 0.00067 21.3 0.6 19 26-44 14-32 (64)
42 TIGR03343 biphenyl_bphD 2-hydr 25.4 17 0.00038 23.6 -0.6 12 14-25 104-115 (282)
43 PF07225 NDUF_B4: NADH-ubiquin 25.3 51 0.0011 22.6 1.7 26 30-55 87-112 (125)
44 PF13396 PLDc_N: Phospholipase 24.3 88 0.0019 16.6 2.2 23 24-46 17-46 (46)
45 COG2021 MET2 Homoserine acetyl 24.2 14 0.00031 29.4 -1.4 16 11-26 147-162 (368)
46 PF04315 DUF462: Protein of un 23.4 53 0.0012 23.9 1.5 27 29-55 49-80 (164)
47 PF07631 PSD4: Protein of unkn 22.8 80 0.0017 21.0 2.2 20 31-50 3-23 (128)
48 PRK11071 esterase YqiA; Provis 22.8 17 0.00038 24.2 -1.0 11 14-24 64-74 (190)
49 PF00561 Abhydrolase_1: alpha/ 22.5 15 0.00032 22.5 -1.3 17 7-23 39-56 (230)
50 PRK13455 F0F1 ATP synthase sub 22.0 61 0.0013 21.9 1.5 16 33-48 38-53 (184)
51 PF00756 Esterase: Putative es 21.8 13 0.00027 24.4 -1.8 11 13-23 117-127 (251)
52 PF11808 DUF3329: Domain of un 21.7 33 0.00072 21.3 0.2 41 1-43 1-43 (90)
53 PHA03265 envelope glycoprotein 21.3 39 0.00084 27.8 0.5 37 13-54 347-383 (402)
54 PRK15092 DNA-binding transcrip 21.1 1.1E+02 0.0023 21.6 2.6 30 40-69 264-293 (310)
55 PF07609 DUF1572: Protein of u 20.9 41 0.00088 23.9 0.5 14 8-21 51-64 (163)
56 TIGR03056 bchO_mg_che_rel puta 20.4 25 0.00054 22.4 -0.6 10 14-23 98-107 (278)
57 PF06737 Transglycosylas: Tran 20.4 1.7E+02 0.0036 18.8 3.2 48 8-60 15-64 (77)
58 PF04240 DUF422: Protein of un 20.3 19 0.00042 25.7 -1.2 17 27-43 145-161 (214)
59 COG4721 ABC-type cobalt transp 20.2 1.7E+02 0.0038 22.0 3.7 32 28-59 51-82 (192)
60 PHA02857 monoglyceride lipase; 20.2 28 0.00061 22.9 -0.4 9 15-23 101-109 (276)
No 1
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=86.71 E-value=0.61 Score=31.25 Aligned_cols=29 Identities=3% Similarity=-0.014 Sum_probs=22.2
Q ss_pred hhHHHHHHhhhhhheeeecCchhhHHHHH
Q 035274 27 ANLASWVVAGTLAYYLWVKPSQDLKREQE 55 (69)
Q Consensus 27 ~nlAaW~VAG~lAYylwvkPe~~~~~eqe 55 (69)
..+.-+++..++-|||.++|.|.+++|++
T Consensus 5 ~~ll~lv~i~~i~yF~~iRPQkKr~K~~~ 33 (109)
T PRK05886 5 VLFLPFLLIMGGFMYFASRRQRKAMQATI 33 (109)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 45666777788889999999877666654
No 2
>PF15141 DUF4574: Domain of unknown function (DUF4574)
Probab=83.11 E-value=1.1 Score=29.56 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=22.0
Q ss_pred ccccCCchhHHHHHHhhhhhheeee--cCchhhHHH
Q 035274 20 MGGVRGGANLASWVVAGTLAYYLWV--KPSQDLKRE 53 (69)
Q Consensus 20 mgG~RG~~nlAaW~VAG~lAYylwv--kPe~~~~~e 53 (69)
|+++|=--+..+=+-+||++|.||. .|..++++|
T Consensus 1 M~~~r~~~~~~~llG~GGvG~~L~~LvtPgeerK~e 36 (84)
T PF15141_consen 1 MSSLRKALSVVALLGFGGVGYALFVLVTPGEERKQE 36 (84)
T ss_pred CchHHHHHHHHHHHHccchhheeeeEeCCcHHHHHH
Confidence 4455544555666678999999986 566664433
No 3
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=82.10 E-value=2.1 Score=26.93 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=20.6
Q ss_pred hHHHHHHhhhhhheeeecCchhhHHHHHH
Q 035274 28 NLASWVVAGTLAYYLWVKPSQDLKREQEV 56 (69)
Q Consensus 28 nlAaW~VAG~lAYylwvkPe~~~~~eqe~ 56 (69)
.+.-.++...+-|||.++|.+.+++++++
T Consensus 5 ~l~~~vv~~~i~yf~~~rpqkK~~k~~~~ 33 (84)
T TIGR00739 5 TLLPLVLIFLIFYFLIIRPQRKRRKAHKK 33 (84)
T ss_pred HHHHHHHHHHHHHHheechHHHHHHHHHH
Confidence 34455666778899999998776666543
No 4
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=81.78 E-value=0.3 Score=33.50 Aligned_cols=12 Identities=50% Similarity=1.060 Sum_probs=10.3
Q ss_pred hhhhhcccccCC
Q 035274 14 SFVGNSMGGVRG 25 (69)
Q Consensus 14 sfi~nsmgG~RG 25 (69)
||||.||||+--
T Consensus 81 sfIgHSLGGli~ 92 (217)
T PF05057_consen 81 SFIGHSLGGLIA 92 (217)
T ss_pred eEEEecccHHHH
Confidence 899999999743
No 5
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=79.51 E-value=2.4 Score=27.92 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=26.2
Q ss_pred CchhHHHHHHhhhhhheeeecCchhhHHHHHHH
Q 035274 25 GGANLASWVVAGTLAYYLWVKPSQDLKREQEVQ 57 (69)
Q Consensus 25 G~~nlAaW~VAG~lAYylwvkPe~~~~~eqe~r 57 (69)
+.+.+.--++...+-||+.++|.|.+.+|.++.
T Consensus 8 ~~~~ll~~vl~~~ifyFli~RPQrKr~K~~~~m 40 (97)
T COG1862 8 GLVLLLPLVLIFAIFYFLIIRPQRKRMKEHQEL 40 (97)
T ss_pred cHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 346677788899999999999988777766554
No 6
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=78.88 E-value=2.3 Score=27.86 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=23.5
Q ss_pred hhHHHHHHhhhhhheeeecCchhhHHHHHHH
Q 035274 27 ANLASWVVAGTLAYYLWVKPSQDLKREQEVQ 57 (69)
Q Consensus 27 ~nlAaW~VAG~lAYylwvkPe~~~~~eqe~r 57 (69)
..+.-+++...+-|||-++|.|.+++|+++.
T Consensus 19 ~~ll~lvii~~i~yf~~~RpqkK~~k~~~~~ 49 (106)
T PRK05585 19 SSLLPLVVFFAIFYFLIIRPQQKRQKEHKKM 49 (106)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4666677777888999999988777766543
No 7
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=75.60 E-value=0.9 Score=28.16 Aligned_cols=30 Identities=20% Similarity=0.462 Sum_probs=21.8
Q ss_pred hhHHHHHHhhhhhheeeecCchhhHHHHHH
Q 035274 27 ANLASWVVAGTLAYYLWVKPSQDLKREQEV 56 (69)
Q Consensus 27 ~nlAaW~VAG~lAYylwvkPe~~~~~eqe~ 56 (69)
..+.-.++...+-||+.++|.+.+++|+++
T Consensus 3 ~~li~lv~~~~i~yf~~~rpqkk~~k~~~~ 32 (82)
T PF02699_consen 3 SMLIPLVIIFVIFYFLMIRPQKKQQKEHQE 32 (82)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhheecHHHHHHHHHHH
Confidence 356667777888899999998766555544
No 8
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=64.21 E-value=12 Score=25.18 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=16.6
Q ss_pred hHHHHHHhhhhhheeeecCchhhHHHHHH
Q 035274 28 NLASWVVAGTLAYYLWVKPSQDLKREQEV 56 (69)
Q Consensus 28 nlAaW~VAG~lAYylwvkPe~~~~~eqe~ 56 (69)
.+.-.++..++-| |.++|.|.+++++++
T Consensus 5 ~il~~vv~~~i~y-f~iRPQkKr~Ke~~e 32 (113)
T PRK06531 5 TIIMFVVMLGLIF-FMQRQQKKQAQERQN 32 (113)
T ss_pred HHHHHHHHHHHHH-heechHHHHHHHHHH
Confidence 3444455556655 569998776655543
No 9
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=62.26 E-value=2.5 Score=27.09 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhheeeecCchhhHHHHHHHH
Q 035274 29 LASWVVAGTLAYYLWVKPSQDLKREQEVQS 58 (69)
Q Consensus 29 lAaW~VAG~lAYylwvkPe~~~~~eqe~ra 58 (69)
+++.+++..+.|++.+.|-.+.+++.+.+.
T Consensus 21 ~~~~~l~~~l~~~~~~~P~~~~~~~~~~~l 50 (160)
T PF04612_consen 21 VLGVVLLLALLYLLLWQPLLERRDQLQQQL 50 (160)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999999999988776655443
No 10
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=55.77 E-value=19 Score=22.35 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=19.4
Q ss_pred CchhHHHHHHhhhhhheeeecCch
Q 035274 25 GGANLASWVVAGTLAYYLWVKPSQ 48 (69)
Q Consensus 25 G~~nlAaW~VAG~lAYylwvkPe~ 48 (69)
++.|++.++|.-|+|+.....+..
T Consensus 90 ~~~~l~~~Lv~~G~A~~~~~~~~~ 113 (138)
T smart00318 90 GGNNIAEELVKEGLAKVYRYADKD 113 (138)
T ss_pred CCCcHHHHHHhcCCEEEEEecCcc
Confidence 457899999999999888766543
No 11
>COG4803 Predicted membrane protein [Function unknown]
Probab=49.12 E-value=14 Score=27.18 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=19.1
Q ss_pred ecCchhhHHHHHHHHHHhhhcCc
Q 035274 44 VKPSQDLKREQEVQSFIHLLFDC 66 (69)
Q Consensus 44 vkPe~~~~~eqe~raAlA~~~d~ 66 (69)
++-+.++.+||..|+|+++++-|
T Consensus 144 lrTSLs~e~E~~Lr~a~~~~~~~ 166 (170)
T COG4803 144 LRTSLSKEEEQKLRAALSEGEAP 166 (170)
T ss_pred EEccCCHHHHHHHHHHHhcccCC
Confidence 56678889999999999987654
No 12
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=48.52 E-value=10 Score=27.75 Aligned_cols=19 Identities=37% Similarity=0.735 Sum_probs=11.4
Q ss_pred Hhhhhhhee-eecCchhhHH
Q 035274 34 VAGTLAYYL-WVKPSQDLKR 52 (69)
Q Consensus 34 VAG~lAYyl-wvkPe~~~~~ 52 (69)
.+||.+||| ++||-++.+.
T Consensus 172 ~gGGa~yYfK~~K~K~~~~~ 191 (218)
T PF14283_consen 172 IGGGAYYYFKFYKPKQEEKA 191 (218)
T ss_pred hhcceEEEEEEecccccccc
Confidence 445555555 7788666553
No 13
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=46.93 E-value=4.3 Score=28.36 Aligned_cols=12 Identities=50% Similarity=0.894 Sum_probs=9.5
Q ss_pred hhhhcccccCCc
Q 035274 15 FVGNSMGGVRGG 26 (69)
Q Consensus 15 fi~nsmgG~RG~ 26 (69)
+||.||||+--+
T Consensus 89 lVgHSmGGlvar 100 (225)
T PF07819_consen 89 LVGHSMGGLVAR 100 (225)
T ss_pred EEEEchhhHHHH
Confidence 789999997543
No 14
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=46.81 E-value=3.8 Score=28.43 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=9.2
Q ss_pred hhhhhcccccC
Q 035274 14 SFVGNSMGGVR 24 (69)
Q Consensus 14 sfi~nsmgG~R 24 (69)
-+||.||||+-
T Consensus 62 ~liGSSlGG~~ 72 (187)
T PF05728_consen 62 VLIGSSLGGFY 72 (187)
T ss_pred EEEEEChHHHH
Confidence 57999999983
No 15
>PRK06518 hypothetical protein; Provisional
Probab=46.40 E-value=20 Score=25.25 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=23.4
Q ss_pred CchhHHHHHHhhhhhheeeecCc-----hhhHHHHHHHHH
Q 035274 25 GGANLASWVVAGTLAYYLWVKPS-----QDLKREQEVQSF 59 (69)
Q Consensus 25 G~~nlAaW~VAG~lAYylwvkPe-----~~~~~eqe~raA 59 (69)
++.+|..++|.-|+|+..-..|+ .=.+.|+++|.+
T Consensus 110 ~g~dln~~mV~~G~A~ay~~~~~~~~~~~y~~aE~~AR~~ 149 (177)
T PRK06518 110 DGVDIAALGLAEGMAVLSKDDHEDPGPAQYASLEEKARKA 149 (177)
T ss_pred CCEEHHHHHHhCCCEEEEeeccCCCCHHHHHHHHHHHHHh
Confidence 46799999999999987655442 223445555544
No 16
>PTZ00046 rifin; Provisional
Probab=45.95 E-value=7.4 Score=30.92 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=27.3
Q ss_pred hhcccccCCchhHHHHHHhhhhhheeeecCchhhHHHHHHHHH
Q 035274 17 GNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSF 59 (69)
Q Consensus 17 ~nsmgG~RG~~nlAaW~VAG~lAYylwvkPe~~~~~eqe~raA 59 (69)
-++-+|| | .=..+|++-||++|+-|.+-......+...+++
T Consensus 141 LkCG~~L-G-gVaP~~Gliggi~~~~Wk~~a~~aA~~aa~~ag 181 (358)
T PTZ00046 141 LRCGCGL-G-GVAPSWGLIGGIAVNAWKKAALAAAIKAAIKAG 181 (358)
T ss_pred HhcCCcc-c-cccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666 5 456899999999999997655555444333333
No 17
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.64 E-value=13 Score=29.20 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=21.3
Q ss_pred CchhHHHHHHhhhhhheeeecCch
Q 035274 25 GGANLASWVVAGTLAYYLWVKPSQ 48 (69)
Q Consensus 25 G~~nlAaW~VAG~lAYylwvkPe~ 48 (69)
+.-|++||.+|-++-|-|..|||=
T Consensus 89 ~~i~~~si~~aI~~~~lL~~~peW 112 (277)
T COG3389 89 YAINIASIGLAIGLVYLLYKYPEW 112 (277)
T ss_pred HHHHHHHHHHHHHHHHhhhhccce
Confidence 356999999999999999999983
No 18
>PF09819 ABC_cobalt: ABC-type cobalt transport system, permease component; InterPro: IPR017195 This group represents a predicted ABC-type thiamin-related transport system, permease component 1. It is probably part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. It could also transport other HMP-containing products. The complex is composed of two ATP-binding proteins (ykoD), two transmembrane proteins (ykoC and ykoE) and a solute-binding protein (ykoF).
Probab=44.17 E-value=9.4 Score=25.83 Aligned_cols=25 Identities=40% Similarity=0.667 Sum_probs=20.4
Q ss_pred HHHHHHhhhhhheeeecCchhhHHH
Q 035274 29 LASWVVAGTLAYYLWVKPSQDLKRE 53 (69)
Q Consensus 29 lAaW~VAG~lAYylwvkPe~~~~~e 53 (69)
..-|..++.++.|+..||--..--|
T Consensus 44 ~GlW~~a~~la~~iiRKPGaa~~~e 68 (129)
T PF09819_consen 44 YGLWFMAGPLAAYIIRKPGAALLAE 68 (129)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 4579999999999999997655443
No 19
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=43.47 E-value=8.4 Score=25.65 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=17.4
Q ss_pred HHHHHhhhhhheeeecCchhhHH
Q 035274 30 ASWVVAGTLAYYLWVKPSQDLKR 52 (69)
Q Consensus 30 AaW~VAG~lAYylwvkPe~~~~~ 52 (69)
.+=+++|+.+|||..+|..+.+.
T Consensus 14 ~~l~~~g~~~~~~~~~~~~~~~~ 36 (142)
T PRK07718 14 IVIALIGTAALVLVMGFSEAKKQ 36 (142)
T ss_pred HHHHHHHHHHHhhhcccCCcccc
Confidence 34567788999999998766654
No 20
>PLN02965 Probable pheophorbidase
Probab=42.37 E-value=6.2 Score=26.12 Aligned_cols=11 Identities=45% Similarity=0.782 Sum_probs=8.9
Q ss_pred hhhhhcccccC
Q 035274 14 SFVGNSMGGVR 24 (69)
Q Consensus 14 sfi~nsmgG~R 24 (69)
-+||+||||.-
T Consensus 75 ~lvGhSmGG~i 85 (255)
T PLN02965 75 ILVGHSIGGGS 85 (255)
T ss_pred EEEecCcchHH
Confidence 47899999973
No 21
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=40.31 E-value=21 Score=24.70 Aligned_cols=41 Identities=22% Similarity=0.146 Sum_probs=31.3
Q ss_pred chhHHHHHHhhhhhheeeecCchhhHHHHHHHHHHhhhcCc
Q 035274 26 GANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFIHLLFDC 66 (69)
Q Consensus 26 ~~nlAaW~VAG~lAYylwvkPe~~~~~eqe~raAlA~~~d~ 66 (69)
=.|+.|.++..++.-|+=.|-|+|..+.+.+|....-..||
T Consensus 38 la~~iAga~SMa~G~yls~~se~~~~~~e~~re~~e~~~~p 78 (213)
T PF01988_consen 38 LAGLIAGAISMAVGEYLSVKSERDLYEAEREREEWELENNP 78 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHhCh
Confidence 35677888888889999999999988887777555444444
No 22
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=40.26 E-value=19 Score=26.00 Aligned_cols=29 Identities=3% Similarity=-0.026 Sum_probs=21.1
Q ss_pred HHHHHHhhhhhheeeecCchhhHHHHHHH
Q 035274 29 LASWVVAGTLAYYLWVKPSQDLKREQEVQ 57 (69)
Q Consensus 29 lAaW~VAG~lAYylwvkPe~~~~~eqe~r 57 (69)
+++..+.|.++.++|.+||++++||--.|
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (452)
T PRK11273 420 MIGGSILAVILLIVVMIGEKRHHEELLQK 448 (452)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHhh
Confidence 44455667778888999999888775443
No 23
>PF14960 ATP_synth_reg: ATP synthase regulation
Probab=39.71 E-value=21 Score=21.50 Aligned_cols=25 Identities=28% Similarity=0.601 Sum_probs=17.1
Q ss_pred cCCchhH--HHHHHhhhhhheeeecCc
Q 035274 23 VRGGANL--ASWVVAGTLAYYLWVKPS 47 (69)
Q Consensus 23 ~RG~~nl--AaW~VAG~lAYylwvkPe 47 (69)
++|+.|. |.|+.-|.+..|+..+|.
T Consensus 22 ~~GR~N~~~ATya~i~li~~~~k~~~k 48 (49)
T PF14960_consen 22 IRGRANVAKATYASIGLIILYFKLRRK 48 (49)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhcccC
Confidence 6899996 567666666666666654
No 24
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=39.34 E-value=19 Score=23.14 Aligned_cols=27 Identities=41% Similarity=0.516 Sum_probs=19.9
Q ss_pred hhhhhhcccccCCchhHHHHHHhhhhh
Q 035274 13 RSFVGNSMGGVRGGANLASWVVAGTLA 39 (69)
Q Consensus 13 rsfi~nsmgG~RG~~nlAaW~VAG~lA 39 (69)
-+|+.-.+||-+|+.|-.|.-+|-.|.
T Consensus 48 g~~vIplL~GH~GGan~lA~~iA~~lg 74 (84)
T PF11760_consen 48 GRFVIPLLGGHRGGANELARQIAELLG 74 (84)
T ss_dssp --EEEEEE-TTTT-HHHHHHHHHHHTT
T ss_pred CCEEEEeccCCcchHHHHHHHHHHHhC
Confidence 368888999999999999998887653
No 25
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=38.52 E-value=17 Score=20.28 Aligned_cols=10 Identities=40% Similarity=1.046 Sum_probs=8.6
Q ss_pred CchhHHHHHH
Q 035274 25 GGANLASWVV 34 (69)
Q Consensus 25 G~~nlAaW~V 34 (69)
|..|+.|||.
T Consensus 13 ~~~NFSaWV~ 22 (30)
T PF13132_consen 13 GSGNFSAWVK 22 (30)
T ss_pred cCcChHHHHH
Confidence 5789999986
No 26
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=37.22 E-value=6.5 Score=27.76 Aligned_cols=10 Identities=50% Similarity=0.919 Sum_probs=8.6
Q ss_pred hhhhhccccc
Q 035274 14 SFVGNSMGGV 23 (69)
Q Consensus 14 sfi~nsmgG~ 23 (69)
.+||+||||.
T Consensus 141 ~lvG~SmGG~ 150 (343)
T PRK08775 141 AFVGYSYGAL 150 (343)
T ss_pred EEEEECHHHH
Confidence 5899999994
No 27
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=36.53 E-value=6.3 Score=25.11 Aligned_cols=10 Identities=50% Similarity=0.783 Sum_probs=7.7
Q ss_pred hhhhhccccc
Q 035274 14 SFVGNSMGGV 23 (69)
Q Consensus 14 sfi~nsmgG~ 23 (69)
.+||+||||.
T Consensus 69 ~lvG~S~Gg~ 78 (242)
T PRK11126 69 WLVGYSLGGR 78 (242)
T ss_pred EEEEECHHHH
Confidence 3679999985
No 28
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=36.20 E-value=20 Score=19.31 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=14.0
Q ss_pred HHHHHHhhhhhheeeecCchh
Q 035274 29 LASWVVAGTLAYYLWVKPSQD 49 (69)
Q Consensus 29 lAaW~VAG~lAYylwvkPe~~ 49 (69)
+..|.++|+++.| +||.|
T Consensus 19 l~~~~~tG~~~~f---~~ei~ 36 (37)
T PF13706_consen 19 LFVIFLTGAVMVF---RDEID 36 (37)
T ss_pred HHHHHHHhHHHHH---HHhhc
Confidence 6789999999987 55543
No 29
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=36.05 E-value=59 Score=19.79 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.0
Q ss_pred chhHHHHHHhhhhhheeeecCc
Q 035274 26 GANLASWVVAGTLAYYLWVKPS 47 (69)
Q Consensus 26 ~~nlAaW~VAG~lAYylwvkPe 47 (69)
+.|+..++|.-|+|...-..+.
T Consensus 83 ~~~v~~~Lv~~G~A~~~~~~~~ 104 (129)
T cd00175 83 GENIAEELVKEGLARVYRYYPD 104 (129)
T ss_pred CCcHHHHHHhcCCEEEEEECCC
Confidence 5799999999999998877664
No 30
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=35.92 E-value=19 Score=21.17 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=18.4
Q ss_pred HHHhhhhhheeeecCchhhHHHHHHH
Q 035274 32 WVVAGTLAYYLWVKPSQDLKREQEVQ 57 (69)
Q Consensus 32 W~VAG~lAYylwvkPe~~~~~eqe~r 57 (69)
+.+-..-.|+..++|.+++.+|||++
T Consensus 31 ~~~~~~y~~~~~~r~~~~~~~e~~~~ 56 (59)
T PF14880_consen 31 LTVYTVYSYFKYNRRRRAEWIEREKQ 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566788899998877777665
No 31
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=35.61 E-value=8.2 Score=26.74 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=9.3
Q ss_pred hhhhhcccccCC
Q 035274 14 SFVGNSMGGVRG 25 (69)
Q Consensus 14 sfi~nsmgG~RG 25 (69)
.+||+||||+-+
T Consensus 90 ~lvGhS~GG~v~ 101 (273)
T PLN02211 90 ILVGHSAGGLSV 101 (273)
T ss_pred EEEEECchHHHH
Confidence 367999999843
No 32
>PHA00431 internal virion protein C
Probab=35.03 E-value=31 Score=30.26 Aligned_cols=67 Identities=27% Similarity=0.335 Sum_probs=45.8
Q ss_pred Ccchhhhhhhhhhhh-hhhcccccCCc-------------h----hHHHHHHhhhhhheeeecCchhhHHH---------
Q 035274 1 MASSWRRTIGNLRSF-VGNSMGGVRGG-------------A----NLASWVVAGTLAYYLWVKPSQDLKRE--------- 53 (69)
Q Consensus 1 ma~~wrrt~gn~rsf-i~nsmgG~RG~-------------~----nlAaW~VAG~lAYylwvkPe~~~~~e--------- 53 (69)
|||.-.+.+|++|.- ..-+=||.+|- + .|+-|+=||+-||-.+..-.+++..|
T Consensus 1 MaSkl~~aL~q~~~~g~~rlrg~~~~~~yqA~~v~a~~~~s~ll~sl~~f~~aG~~ay~~y~~~~k~~AdERSNEIIRKL 80 (746)
T PHA00431 1 MASKLEQALGQMRAPGTERLRGGTGGMQYQAATVQAEVGQSNLLESLGKFAKAGADAYGAYDERRKDKADERSNEIIRKL 80 (746)
T ss_pred CcchHHHHHhcccCCcccccccccccceeehhhhccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhHHHHHHhc
Confidence 788888888887742 22233444442 2 45679999999999998888877776
Q ss_pred --HHHHHHHhhh-----cCcC
Q 035274 54 --QEVQSFIHLL-----FDCY 67 (69)
Q Consensus 54 --qe~raAlA~~-----~d~y 67 (69)
|+.|.|+..- +|||
T Consensus 81 TPEQrReAi~nGTLLYQDDPY 101 (746)
T PHA00431 81 TPEQRREAIKNGTLLYQDDPY 101 (746)
T ss_pred CHHHHHHHHhcCceeecCCHH
Confidence 3556677653 5666
No 33
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=32.45 E-value=30 Score=20.11 Aligned_cols=15 Identities=20% Similarity=0.775 Sum_probs=12.3
Q ss_pred HHHHHHhhhhhheee
Q 035274 29 LASWVVAGTLAYYLW 43 (69)
Q Consensus 29 lAaW~VAG~lAYylw 43 (69)
...|.++|.+.|+.+
T Consensus 32 f~iWl~iGl~iYf~Y 46 (51)
T PF13906_consen 32 FGIWLAIGLVIYFGY 46 (51)
T ss_pred HHHHHHHHHHHHHhe
Confidence 568999999988864
No 34
>PRK07581 hypothetical protein; Validated
Probab=29.39 E-value=9.9 Score=26.45 Aligned_cols=12 Identities=42% Similarity=0.471 Sum_probs=9.4
Q ss_pred hhhhhcccccCC
Q 035274 14 SFVGNSMGGVRG 25 (69)
Q Consensus 14 sfi~nsmgG~RG 25 (69)
.+||+||||.-+
T Consensus 127 ~lvG~S~GG~va 138 (339)
T PRK07581 127 LVVGWSMGAQQT 138 (339)
T ss_pred EEEEeCHHHHHH
Confidence 368999999754
No 35
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=28.44 E-value=11 Score=25.24 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=8.8
Q ss_pred hhhhhcccccC
Q 035274 14 SFVGNSMGGVR 24 (69)
Q Consensus 14 sfi~nsmgG~R 24 (69)
.+||+||||.-
T Consensus 94 ~LvG~S~GG~v 104 (276)
T TIGR02240 94 NAIGVSWGGAL 104 (276)
T ss_pred EEEEECHHHHH
Confidence 36899999973
No 36
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=27.32 E-value=12 Score=27.62 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=12.4
Q ss_pred hhhhhcccccCCchhHH
Q 035274 14 SFVGNSMGGVRGGANLA 30 (69)
Q Consensus 14 sfi~nsmgG~RG~~nlA 30 (69)
+.|||||||+-+-.=.|
T Consensus 131 ~lvghS~Gg~va~~~Aa 147 (326)
T KOG1454|consen 131 SLVGHSLGGIVALKAAA 147 (326)
T ss_pred EEEEeCcHHHHHHHHHH
Confidence 57899999986654333
No 37
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.23 E-value=27 Score=26.53 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=15.3
Q ss_pred hhhhheeeecCchhhHHHHH
Q 035274 36 GTLAYYLWVKPSQDLKREQE 55 (69)
Q Consensus 36 G~lAYylwvkPe~~~~~eqe 55 (69)
=+++|.|..+|.+|..++++
T Consensus 36 ~~lGy~f~~s~k~eel~~~~ 55 (211)
T COG3167 36 LGLGYAFYLSGKLEELEELE 55 (211)
T ss_pred HHHHHHHHhccHHHHHHHHH
Confidence 36899999999998765443
No 38
>PRK10580 proY putative proline-specific permease; Provisional
Probab=26.65 E-value=16 Score=27.16 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=19.0
Q ss_pred HHHHHHhhhhhheeeecCchhhHHHH
Q 035274 29 LASWVVAGTLAYYLWVKPSQDLKREQ 54 (69)
Q Consensus 29 lAaW~VAG~lAYylwvkPe~~~~~eq 54 (69)
...|++.+.+.|.++.|-.+++.|.|
T Consensus 432 ~~~~~~~~~~~y~~~~~~~~~~~~~~ 457 (457)
T PRK10580 432 GFAWIVLLLIGWMFKRRHDRQLAEAQ 457 (457)
T ss_pred HHHHHHHHHHHHHHHhcccCCccccC
Confidence 35688899999999877666665543
No 39
>PRK11387 S-methylmethionine transporter; Provisional
Probab=26.62 E-value=30 Score=25.91 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=16.4
Q ss_pred HHHhhhhhheeeecCchhhHHHHHHH
Q 035274 32 WVVAGTLAYYLWVKPSQDLKREQEVQ 57 (69)
Q Consensus 32 W~VAG~lAYylwvkPe~~~~~eqe~r 57 (69)
|++.+-+.|++|.| +.++-.||+|
T Consensus 444 ~~~~~~~~~~~~~~--~~~~~~~~~~ 467 (471)
T PRK11387 444 FVALCYGAYYLTQR--LKRNMTQEAR 467 (471)
T ss_pred HHHHHHHHHHHhcc--ccccccHhhh
Confidence 45677777888876 4566667766
No 40
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=26.27 E-value=17 Score=21.70 Aligned_cols=13 Identities=54% Similarity=0.889 Sum_probs=11.0
Q ss_pred HHhhhhhheeeec
Q 035274 33 VVAGTLAYYLWVK 45 (69)
Q Consensus 33 ~VAG~lAYylwvk 45 (69)
++-|++|||++.+
T Consensus 13 v~iG~~ayyl~e~ 25 (47)
T PF11654_consen 13 VFIGTSAYYLYEN 25 (47)
T ss_pred HHHHHHHHHHHHH
Confidence 5679999999875
No 41
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=25.67 E-value=31 Score=21.33 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=14.9
Q ss_pred chhHHHHHHhhhhhheeee
Q 035274 26 GANLASWVVAGTLAYYLWV 44 (69)
Q Consensus 26 ~~nlAaW~VAG~lAYylwv 44 (69)
+.|++.|.+|.+.+-.++.
T Consensus 14 ~p~~a~wG~aa~~~v~~f~ 32 (64)
T PF09796_consen 14 GPNLALWGGAAGAAVLFFT 32 (64)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5789999999888766654
No 42
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=25.38 E-value=17 Score=23.65 Aligned_cols=12 Identities=58% Similarity=0.991 Sum_probs=9.5
Q ss_pred hhhhhcccccCC
Q 035274 14 SFVGNSMGGVRG 25 (69)
Q Consensus 14 sfi~nsmgG~RG 25 (69)
.+||.||||.-+
T Consensus 104 ~lvG~S~Gg~ia 115 (282)
T TIGR03343 104 HLVGNSMGGATA 115 (282)
T ss_pred eEEEECchHHHH
Confidence 578999998654
No 43
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=25.31 E-value=51 Score=22.57 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=20.9
Q ss_pred HHHHHhhhhhheeeecCchhhHHHHH
Q 035274 30 ASWVVAGTLAYYLWVKPSQDLKREQE 55 (69)
Q Consensus 30 AaW~VAG~lAYylwvkPe~~~~~eqe 55 (69)
+.|+|+=.+.||+.+|=++|++|++-
T Consensus 87 ~~~~v~P~i~~~~~~KtdRD~~E~~~ 112 (125)
T PF07225_consen 87 LGFGVVPLIFYYYVLKTDRDRKEKLI 112 (125)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHH
Confidence 45667777889999999999988764
No 44
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=24.31 E-value=88 Score=16.63 Aligned_cols=23 Identities=17% Similarity=0.595 Sum_probs=16.4
Q ss_pred CCchhHHHHHHh-------hhhhheeeecC
Q 035274 24 RGGANLASWVVA-------GTLAYYLWVKP 46 (69)
Q Consensus 24 RG~~nlAaW~VA-------G~lAYylwvkP 46 (69)
|..++-.+|++. |.++|+++-++
T Consensus 17 ~~~~~k~~W~~~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 17 RSPSSKILWLIVILFFPIIGPILYLIFGRK 46 (46)
T ss_pred CCCchhhHHHHHHHHHHHHHHhheEEEeCC
Confidence 556788899854 77888877553
No 45
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=24.17 E-value=14 Score=29.42 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=12.7
Q ss_pred hhhhhhhhcccccCCc
Q 035274 11 NLRSFVGNSMGGVRGG 26 (69)
Q Consensus 11 n~rsfi~nsmgG~RG~ 26 (69)
.+...||.||||...-
T Consensus 147 ~l~avvGgSmGGMqal 162 (368)
T COG2021 147 KLAAVVGGSMGGMQAL 162 (368)
T ss_pred eEeeeeccChHHHHHH
Confidence 4678899999998653
No 46
>PF04315 DUF462: Protein of unknown function, DUF462; InterPro: IPR007411 This family consists of bacterial proteins of uncharacterised function.
Probab=23.41 E-value=53 Score=23.89 Aligned_cols=27 Identities=26% Similarity=0.580 Sum_probs=20.7
Q ss_pred HHHHHHhhh-----hhheeeecCchhhHHHHH
Q 035274 29 LASWVVAGT-----LAYYLWVKPSQDLKREQE 55 (69)
Q Consensus 29 lAaW~VAG~-----lAYylwvkPe~~~~~eqe 55 (69)
+|=|.|||- .=|-.||-|+=...++|.
T Consensus 49 IaHWciAG~~RR~l~DfGYWY~PDGR~~~qQ~ 80 (164)
T PF04315_consen 49 IAHWCIAGPERRQLEDFGYWYCPDGRDAEQQA 80 (164)
T ss_pred HHHHHhccccccccccCCCCcCCCCCCHHHHH
Confidence 577999985 458899999876666554
No 47
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=22.80 E-value=80 Score=20.96 Aligned_cols=20 Identities=35% Similarity=0.911 Sum_probs=15.3
Q ss_pred HHHHhhhhhheeeecC-chhh
Q 035274 31 SWVVAGTLAYYLWVKP-SQDL 50 (69)
Q Consensus 31 aW~VAG~lAYylwvkP-e~~~ 50 (69)
.+-+|-=|+|+||--| +.++
T Consensus 3 ~~ElAsrLSYfLw~s~PD~~L 23 (128)
T PF07631_consen 3 DYELASRLSYFLWGSPPDAEL 23 (128)
T ss_pred HHHHHHHHHHHHhcCCCCHHH
Confidence 4567888999999865 6555
No 48
>PRK11071 esterase YqiA; Provisional
Probab=22.76 E-value=17 Score=24.16 Aligned_cols=11 Identities=45% Similarity=0.866 Sum_probs=8.8
Q ss_pred hhhhhcccccC
Q 035274 14 SFVGNSMGGVR 24 (69)
Q Consensus 14 sfi~nsmgG~R 24 (69)
..||+||||.-
T Consensus 64 ~lvG~S~Gg~~ 74 (190)
T PRK11071 64 GLVGSSLGGYY 74 (190)
T ss_pred EEEEECHHHHH
Confidence 56899999963
No 49
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=22.46 E-value=15 Score=22.48 Aligned_cols=17 Identities=41% Similarity=0.855 Sum_probs=10.4
Q ss_pred hhhhhhh-hhhhhccccc
Q 035274 7 RTIGNLR-SFVGNSMGGV 23 (69)
Q Consensus 7 rt~gn~r-sfi~nsmgG~ 23 (69)
+.+|--+ ..||.||||.
T Consensus 39 ~~l~~~~~~~vG~S~Gg~ 56 (230)
T PF00561_consen 39 EALGIKKINLVGHSMGGM 56 (230)
T ss_dssp HHHTTSSEEEEEETHHHH
T ss_pred HHhCCCCeEEEEECCChH
Confidence 3444333 5678888884
No 50
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=22.03 E-value=61 Score=21.86 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=10.9
Q ss_pred HHhhhhhheeeecCch
Q 035274 33 VVAGTLAYYLWVKPSQ 48 (69)
Q Consensus 33 ~VAG~lAYylwvkPe~ 48 (69)
++.+.|.||+|.+|=.
T Consensus 38 il~~iL~~f~~~~~v~ 53 (184)
T PRK13455 38 LFIGILVYFKVPGMIG 53 (184)
T ss_pred HHHHHHHHHhccHHHH
Confidence 4556677777888833
No 51
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=21.79 E-value=13 Score=24.43 Aligned_cols=11 Identities=55% Similarity=1.008 Sum_probs=9.3
Q ss_pred hhhhhhccccc
Q 035274 13 RSFVGNSMGGV 23 (69)
Q Consensus 13 rsfi~nsmgG~ 23 (69)
|..+|.||||+
T Consensus 117 ~~i~G~S~GG~ 127 (251)
T PF00756_consen 117 RAIAGHSMGGY 127 (251)
T ss_dssp EEEEEETHHHH
T ss_pred eEEeccCCCcH
Confidence 67889999986
No 52
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=21.75 E-value=33 Score=21.26 Aligned_cols=41 Identities=32% Similarity=0.553 Sum_probs=21.7
Q ss_pred Ccchhhhhhhhhhhhhhhc--ccccCCchhHHHHHHhhhhhheee
Q 035274 1 MASSWRRTIGNLRSFVGNS--MGGVRGGANLASWVVAGTLAYYLW 43 (69)
Q Consensus 1 ma~~wrrt~gn~rsfi~ns--mgG~RG~~nlAaW~VAG~lAYylw 43 (69)
|..+|++.+..+=-++.=+ .|-+-| .+....++|.++|.+|
T Consensus 1 m~~~w~~~l~~l~~~~l~~~lvG~~~g--~~~~~l~~~l~~~l~w 43 (90)
T PF11808_consen 1 MRNSWRRELWRLLLLLLAAALVGWLFG--HLWWALLLGLLLYLFW 43 (90)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 7788998887664332211 222222 2334455666666654
No 53
>PHA03265 envelope glycoprotein D; Provisional
Probab=21.27 E-value=39 Score=27.78 Aligned_cols=37 Identities=30% Similarity=0.385 Sum_probs=26.7
Q ss_pred hhhhhhcccccCCchhHHHHHHhhhhhheeeecCchhhHHHH
Q 035274 13 RSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQ 54 (69)
Q Consensus 13 rsfi~nsmgG~RG~~nlAaW~VAG~lAYylwvkPe~~~~~eq 54 (69)
-.|||-+.||. +|.-++.|.+-|++|.+-.-.+|.+|
T Consensus 347 ~~~~g~~ig~~-----i~glv~vg~il~~~~rr~k~~~k~~~ 383 (402)
T PHA03265 347 STFVGISVGLG-----IAGLVLVGVILYVCLRRKKELKKSAQ 383 (402)
T ss_pred CcccceEEccc-----hhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 35777788775 56678999999999976544444444
No 54
>PRK15092 DNA-binding transcriptional repressor LrhA; Provisional
Probab=21.12 E-value=1.1e+02 Score=21.62 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=22.2
Q ss_pred heeeecCchhhHHHHHHHHHHhhhcCcCCC
Q 035274 40 YYLWVKPSQDLKREQEVQSFIHLLFDCYQF 69 (69)
Q Consensus 40 YylwvkPe~~~~~eqe~raAlA~~~d~yry 69 (69)
|++|.+........|.-...+....||++|
T Consensus 264 ~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~ 293 (310)
T PRK15092 264 YLLCRDPNSNNELAQVIFQAMESYHNPWQY 293 (310)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHhccccc
Confidence 445555666777777777788888899887
No 55
>PF07609 DUF1572: Protein of unknown function (DUF1572); InterPro: IPR011466 This protein represents proteins with unknown function found in several diverse bacteria.
Probab=20.88 E-value=41 Score=23.85 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=11.7
Q ss_pred hhhhhhhhhhhccc
Q 035274 8 TIGNLRSFVGNSMG 21 (69)
Q Consensus 8 t~gn~rsfi~nsmg 21 (69)
-.||++|++++-+|
T Consensus 51 L~GNm~srw~~fl~ 64 (163)
T PF07609_consen 51 LSGNMNSRWTDFLT 64 (163)
T ss_pred hhccHHHHHHHHhC
Confidence 46999999998665
No 56
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=20.43 E-value=25 Score=22.43 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=8.3
Q ss_pred hhhhhccccc
Q 035274 14 SFVGNSMGGV 23 (69)
Q Consensus 14 sfi~nsmgG~ 23 (69)
..||.||||.
T Consensus 98 ~lvG~S~Gg~ 107 (278)
T TIGR03056 98 GVIGHSAGAA 107 (278)
T ss_pred eEEEECccHH
Confidence 5679999996
No 57
>PF06737 Transglycosylas: Transglycosylase-like domain; InterPro: IPR010618 This family of proteins is very likely to act as transglycosylase enzymes related to IPR001916 from INTERPRO and IPR008258 from INTERPRO. These other families are weakly matched by this family, and include the known active site residues.; GO: 0005576 extracellular region; PDB: 1XSF_A 3EO5_A.
Probab=20.36 E-value=1.7e+02 Score=18.79 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=30.0
Q ss_pred hhhhhhhhhhhcccccCCc--hhHHHHHHhhhhhheeeecCchhhHHHHHHHHHH
Q 035274 8 TIGNLRSFVGNSMGGVRGG--ANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFI 60 (69)
Q Consensus 8 t~gn~rsfi~nsmgG~RG~--~nlAaW~VAG~lAYylwvkPe~~~~~eqe~raAl 60 (69)
+=||.- .|.--|+-|+ =....|.-.|+..|.= .|++.-++||.+.|..
T Consensus 15 SgGn~~---~ntgnG~yGg~Qf~~sTW~a~Gg~~yap--~~~~As~~eQi~~A~~ 64 (77)
T PF06737_consen 15 SGGNWA---INTGNGYYGGLQFSQSTWRAYGGSGYAP--RPDQASRAEQIAVAEK 64 (77)
T ss_dssp CTT-TT------SSSBBTTTTBBHHHHHHTTGGGT-S--SCCCS-HHHHHHHHHH
T ss_pred cCCCCc---cCCCCCccceeccCHHHHHHhCCCcCCC--ChhhCCHHHHHHHHHH
Confidence 446652 2333334443 3468899999999986 8999999999887754
No 58
>PF04240 DUF422: Protein of unknown function (DUF422); InterPro: IPR007354 The proteins in this entry are predicted to be an integral membrane proteins.
Probab=20.26 E-value=19 Score=25.69 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=14.1
Q ss_pred hhHHHHHHhhhhhheee
Q 035274 27 ANLASWVVAGTLAYYLW 43 (69)
Q Consensus 27 ~nlAaW~VAG~lAYylw 43 (69)
||.+.|.+-+.+.+.++
T Consensus 145 ~Nf~GW~~v~~i~~~~~ 161 (214)
T PF04240_consen 145 SNFLGWFLVSFIFMALL 161 (214)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999997766554
No 59
>COG4721 ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]
Probab=20.22 E-value=1.7e+02 Score=21.99 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.2
Q ss_pred hHHHHHHhhhhhheeeecCchhhHHHHHHHHH
Q 035274 28 NLASWVVAGTLAYYLWVKPSQDLKREQEVQSF 59 (69)
Q Consensus 28 nlAaW~VAG~lAYylwvkPe~~~~~eqe~raA 59 (69)
-.--|..|+.+++++.-||--.+--|-.+-.+
T Consensus 51 ~~GiW~maavi~~l~IpkpGaAl~~Ev~Aa~v 82 (192)
T COG4721 51 LFGIWFMAAVIAALFIPKPGAALIGEVLAALV 82 (192)
T ss_pred HHHHHHHHHHHeeeeecCCcHHHHHHHHHHHH
Confidence 35689999999999999999988877655443
No 60
>PHA02857 monoglyceride lipase; Provisional
Probab=20.15 E-value=28 Score=22.95 Aligned_cols=9 Identities=44% Similarity=0.933 Sum_probs=7.7
Q ss_pred hhhhccccc
Q 035274 15 FVGNSMGGV 23 (69)
Q Consensus 15 fi~nsmgG~ 23 (69)
.||.||||.
T Consensus 101 lvG~S~GG~ 109 (276)
T PHA02857 101 LLGHSMGAT 109 (276)
T ss_pred EEEcCchHH
Confidence 689999994
Done!